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Mortality and length of hospital stay after bloodstream infections caused by ESBL-producing compared to non-ESBL-producing E. coli

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Objective: To compare mortality and length of hospital stay between patients with ESBL-producing E. coli bloodstream infections (BSIs) and patients with non-ESBL E. coli BSIs. We also aimed at describing risk factors for ESBL-producing E. coli BSIs and time to effective antibiotic treatment for the two groups. Methods: A retrospective case-control study among adults admitted between 2014 and 2021 to a Norwegian University Hospital. Results: A total of 468 E. coli BSI episodes from 441 patients were included (234 BSIs each in the ESBL- and non-ESBL group). Among the ESBL-producing E. coli BSIs, 10.9% (25/230) deaths occurred within 30 days compared to 9.0% (21/234) in the non-ESBL group. The adjusted 30-day mortality OR was 1.6 (95% CI 0.7-3.7, p = 0.248). Effective antibiotic treatment was administered within 24 hours to 55.2% (129/234) in the ESBL-group compared to 86.8% (203/234) in the non-ESBL group. Among BSIs of urinary tract origin (n = 317), the median length of hospital stay increased by two days in the ESBL group (six versus four days, p < 0.001). No significant difference in the length of hospital stay was found for other sources of infection (n = 151), with a median of seven versus six days (p = 0.550) in the ESBL- and non-ESBL groups, respectively. Conclusion: There was no statistically significant difference in 30-day mortality in ESBL-producing E. coli compared to non-ESBL E. coli BSI, despite a delay in the administration of an effective antibiotic in the former group. ESBL-production was associated with an increased length of stay in BSIs of urinary tract origin.
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Infectious Diseases
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Mortality and length of hospital stay after
bloodstream infections caused by ESBL-producing
compared to non-ESBL-producing E. coli
Nina Handal, Jimmy Whitworth, Magnus Nakrem Lyngbakken, Jan Erik
Berdal, Olav Dalgard & Silje Bakken Jørgensen
To cite this article: Nina Handal, Jimmy Whitworth, Magnus Nakrem Lyngbakken, Jan Erik
Berdal, Olav Dalgard & Silje Bakken Jørgensen (05 Oct 2023): Mortality and length of hospital
stay after bloodstream infections caused by ESBL-producing compared to non-ESBL-producing
E. coli, Infectious Diseases, DOI: 10.1080/23744235.2023.2261538
To link to this article: https://doi.org/10.1080/23744235.2023.2261538
© 2023 The Author(s). Published by Informa
UK Limited, trading as Taylor & Francis
Group.
Published online: 05 Oct 2023.
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INFECTIOUS DISEASES,
2023; VOL. 0,
NO. 0, 1–13
https://doi.org/10.1080/23744235.2023.2261538
RESEARCH ARTICLE
Mortality and length of hospital stay after bloodstream infections caused by
ESBL-producing compared to non-ESBL-producing E. coli
Nina Handal
a
, Jimmy Whitworth
b
, Magnus Nakrem Lyngbakken
c,d
, Jan Erik Berdal
c,d
, Olav Dalgard
c,d
and Silje Bakken Jørgensen
a,e
a
Department of Microbiology and Infection Control, Division for Diagnostics and Technology, Akershus University Hospital,
Lørenskog, Norway;
b
Department of Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, United
Kingdom;
c
Department of Infectious Diseases, Division of Medicine, Akershus University Hospital, Lørenskog, Norway;
d
Institute
for Clinical Medicine, University of Oslo, Norway;
e
Department for Emergency Medicine, Division for Internal Medicine, Akershus
University Hospital, Lørenskog, Norway
ABSTRACT
Objective: To compare mortality and length of hospital stay between patients with ESBL-producing E. coli bloodstream
infections (BSIs) and patients with non-ESBL E. coli BSIs. We also aimed at describing risk factors for ESBL-producing
E. coli BSIs and time to effective antibiotic treatment for the two groups.
Methods: A retrospective case-control study among adults admitted between 2014 and 2021 to a Norwegian University
Hospital.
Results: A total of 468 E. coli BSI episodes from 441 patients were included (234 BSIs each in the ESBL- and non-ESBL
group). Among the ESBL-producing E. coli BSIs, 10.9% (25/230) deaths occurred within 30 days compared to 9.0%
(21/234) in the non-ESBL group. The adjusted 30-day mortality OR was 1.6 (95% CI 0.7–3.7, p= 0.248). Effective antibiotic
treatment was administered within 24 hours to 55.2% (129/234) in the ESBL-group compared to 86.8% (203/234) in the
non-ESBL group. Among BSIs of urinary tract origin (n=317), the median length of hospital stay increased by two days
in the ESBL group (six versus four days, p<0.001). No significant difference in the length of hospital stay was found for
other sources of infection (n= 151), with a median of seven versus six days (p=0.550) in the ESBL- and non-ESBL groups,
respectively.
Conclusion: There was no statistically significant difference in 30-day mortality in ESBL-producing E. coli compared to
non-ESBL E. coli BSI, despite a delay in the administration of an effective antibiotic in the former group. ESBL-production
was associated with an increased length of stay in BSIs of urinary tract origin.
KEYWORDS
Extended-spectrum beta-lactamases (ESBL)
bloodstream infection
mortality
Enterobacterales
antimicrobial resistance
healthcare associated infection
ARTICLE HISTORY
Received 12 May 2023
Revised 14 September 2023
Accepted 14 September 2023
CONTACT
Nina Handal
nina.handal@ahus.no
Department of Microbiology and Infection
Control, Division for Diagnostics and Technology,
Akershus University Hospital, Lørenskog, Norway
2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/),
which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any
way. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
Introduction
Escherichia coli is one of the most common pathogens
causing bloodstream infections (BSIs) [1]. E. coli BSIs may
be hospital acquired or healthcare associated, but
are also commonly of community-acquired origin [2–4].
The incidence of E. coli BSIs has increased in the last
decades, as well as the prevalence of third generation
cephalosporin resistance caused by Extended-Spectrum
Beta-Lactamases (ESBL) [5–9]. Third generation cephalo-
sporin resistant E. coli are estimated to be one of the
leading causes of deaths associated with antimicrobial
resistance [10]. Furthermore, the spread of ESBL is asso-
ciated with increased resistance to other important anti-
biotics (e.g. aminoglycosides, fluoroquinolones and
trimethoprim-sulfamethoxazole) as several antibiotic
resistance genes often assemble on the same mobile
genetic elements that transfer between Gram-negative
bacteria [11].
The association between ESBL-producing
Enterobacterales and outcomes including mortality,
length of stay and effect of inappropriate empiric ther-
apy have been examined with contradicting results. Two
of the earliest meta-analyses found an increased risk of
mortality associated with third generation resistant
Enterobacterales [12,13], but pointed out that results
might have been influenced by different study designs
and populations, and lack of, or incorrectly adjusted,
effect estimates. Further, several of the included studies
had few participants, and they included other pathogens
than E. coli. Still, more recent meta-analyses support the
initial findings of a higher mortality among third gener-
ation cephalosporin resistant Enterobacterales versus
cephalosporin susceptible isolates, although again, esti-
mates might be influenced by heterogenous study
designs and a lack of adjusting for confounders [14–17].
In contrast, other studies examining E. coli BSIs show no
impact of ESBL-production on mortality [18–21],
although none of these are meta-analyses and they dif-
fer in design, study populations and use of empirical
antibiotics. Besides study size, design and population,
other factors that might influence study outcomes of
ESBL-production on mortality are the prevalence of local
antimicrobial resistance, national guidelines on empirical
antibiotic treatment and sepsis management, hospital
resources, definitions of sepsis, health care seeking
behaviour and access to health care and pathogens
examined.
To inform the local antibiotic stewardship program in
our region with a low prevalence of ESBL, we conducted
a study with the primary aim of comparing 30-day mor-
tality and length of hospital stay in patients with ESBL-
producing E. coli (ESBL-EC) BSIs to patients with non-
ESBL E. coli (non-ESBL-EC) BSIs. The secondary aim was
to describe risk factors for ESBL-producing E. coli BSIs
and time to effective antibiotic treatment for the two
groups.
Material and methods
This was a retrospective case-control study conducted at
Akershus University Hospital, Norway, an emergency
care hospital with 1,000 beds and a catchment area of
594,000 inhabitants (approx. 10% of the Norwegian
population). The national prevalence of ESBL-production
in E. coli blood culture isolates varied from 5.8% in 2014
to 7.1% in 2019 [22], with a higher prevalence of 6% in
2014, 11% in 2019 and 6% in 2021 at Akershus
University Hospital (annual antibiotic resistance reports
published locally by the hospital laboratory). The main
empiric antibiotic therapy followed national guidelines
and did not change during the study period.
Adults (18 years) admitted to the hospital with
growth of class A ESBL-producing E. coli [23] in at least
one blood culture bottle sampled between 1st January
2014 to 31st December 2021 were included as cases,
with a minimum of 8 weeks between each included BSI
episode. Controls were selected randomly among adults
with non-ESBL-producing E. coli BSIs after matching by
year of BSI and place of blood culture requisition
(Emergency department or non-Emergency department).
Data were extracted from patient’s electronic medical
records and the laboratory data systems of the hospital.
All data apply to the time of blood culture sampling,
with the following exceptions: the length of stay was
calculated as time from admission to discharge, and
readmissions were defined as a new hospital admission
within 30 days after discharge alive.
Clinical data
The 30-day mortality, length of stay and readmissions
were recorded for all causes, i.e. not only related to BSIs.
The source of infection was extracted from the dis-
charge notes, and if lacking or uncertain, determined by
examining the clinical records during the hospital stay.
Several sources of infections were possible in any given
BSI. Pyelonephritis, kidney abscesses and prostate gland
infections were registered as urinary tract infections.
Charlson Comorbidity Index was calculated based on
2 N. HANDAL ET AL.
comorbidities at the time of blood culture sampling,
according to updated ICD-10 codes [24]. The quick
Sepsis related Organ Failure Assessment (qSOFA) [25]
was calculated based on the worst variable collected up
to 24 h before obtaining the blood culture and used as
a proxy to measure the severity of infection. Septic
shock was defined as patients with a documented serum
lactate >2 mmol/L and vasopressor treatment [25] and
was assessed up to 24 h before obtaining the blood cul-
ture. Neutropenia was defined as a neutrophil count <
0.5 10
9
/L.
The infection was defined as hospital acquired (HA) if
the blood culture was drawn more than 48 h after
admission. A healthcare-associated (HCA) infection was
recorded if the blood culture was sampled 48 h or less
after admission in patients with one or more of the fol-
lowing criteria: hospital stay for two or more days in the
previous 90 days, transfer from a healthcare institution,
day surgery or an invasive procedure in the previous
30 days, regular dialysis or intravenous chemotherapy. A
community acquired (CA) infection was registered if the
blood culture was sampled less than 48 h after admis-
sion in patients without criteria of a HCA infection [26].
Hospital admission abroad within the last 12 months
were only recorded for non-Nordic countries, as these
patients require contact precautions upon admission
according to national guidelines for control of multi-
drug-resistant microbes, and were therefore registered
in the patient file. Antibiotic therapy was recorded for
the previous six months from the patient’s hospital med-
ical journal and information upon admission, regardless
of length of treatment, with the exception of pre-
operative antibiotic prophylaxis.
The time to first effective dose of antibiotic was
defined as the time between the blood culture was
obtained until the first antibiotic towards which the
microbe showed in vitro susceptibility was administered.
Oral administrations of amoxicillin-clavulanate, cefalexin,
pivmecillinam, trimethoprim and nitrofurantoin were not
counted as effective therapy because breakpoints
according to the European Committee on Antimicrobial
Susceptibility Testing (EUCAST) only apply to uncompli-
cated urinary tract infections [27].
Microbiological data
Blood cultures were incubated in the BACTEC auto-
mated blood culture system (Becton Dickinson, USA)
and pathogens were identified by MALDI-TOF mass
spectometry (Bruker Daltonics, Germany). Antimicrobial
susceptibility testing was performed using disc diffu-
sion (BBL Sensi-Disc, Becton Dickinson, USA and Oxoid
susceptibility discs, Thermo Fisher Scientific, USA) in
accordance with EUCAST recommendations [28], or in
cases of ambiguous results, with gradient tests (Etest,
BioM
erieux, France and MTS, Liofilchem, Italy) accord-
ing to the manufacturer’s instructions. Susceptibility
results were categorised using the EUCAST breakpoint
tables at the time of reporting [27]. The presence of
class A ESBL-production was confirmed in isolates with
resistance to at least one third generation cephalo-
sporin by a positive synergy disc test between amoxi-
cillin-clavulanate and one or more third or fourth
generation cephalosporins. A polymicrobial blood cul-
ture was recorded if there was growth of other patho-
gens except E. coli. The time between blood culture
sampling until registration of growth (time to positivity)
was measured in hours and only included monomicro-
bial blood cultures.
Statistics
Baseline data are reported as absolute numbers with
proportions or medians with interquartile ranges (IQR)
unless otherwise stated. Continuous variables were ana-
lysed using the Mann Whitney U test and categorical
variables with the Chi square or Fisher exact test as
appropriate. We used logistic regression to assess the
association of ESBL status with 30-day mortality and
adjusted for age, sex, Charlson Comorbidity Index, type
of infection (health associated, hospital or community
acquired), urinary source of infection and septic shock. A
Kaplan-Meier survival plot was generated to illustrate
the unadjusted association between ESBL status and 30-
day mortality with comparison of groups by the log-
rank test. A subgroup analysis of length of stay was per-
formed for BSIs of urinary tract origin, as we expected
the majority of cases to stem from a urinary tract origin
and these may have shorter lengths of stay than BSIs of
other origins [29]. A box plot was created for the
unadjusted association of ESBL with the length of hos-
pital stay. Study data were collected using REDCap and
analysed in Microsoft Excel (version 2016) and STATA
(version 17). A two-sided p-value of <0.05 was consid-
ered significant. All eligible ESBL-producing E. coli BSIs
isolated in our hospital during the study period were
included. The included sample size supports a detection
of 9% difference in 30day mortality with 80% power
and a confidence level of 95%.
INFECTIOUS DISEASES 3
Results
A total of 468 BSI episodes (234 BSIs each in the ESBL-
and non-ESBL group) from 441 patients were included
(210 with ESBL-EC and 231 with non-ESBL-EC, one patient
was included once in both groups). The main demo-
graphic and clinical characteristics are presented in Table
1, with additional characteristics included in Appendix A.
Mortality
Forty-six deaths (46/468, 9.9%) occurred within 30 days
after obtaining a positive E. coli blood culture (Table 2).
Among these, 14 deaths (30.4%) occurred within 26 h. In
the ESBL group, 25 deaths occurred among 230 BSIs
(10.9%; data missing for four BSIs) compared to 21/234
(9%) in the non-ESBL group during the first 30 days
(unadjusted OR 1.2, 95%CI 0.7 2.3, p¼0.495). After
adjustment for sex, age, type of infection (healthcare or
Table 1. Demographic and clinical characteristics of patients with E. coli blood stream infections.
ESBL-E. coli (N*5234) Non-ESBL-E. coli (N*5234)
N % N % p
Median age (IQR), years 72 (60-80) 72 (64-80) 0.251
Sex, female 112 47.9% 108 46.2% 0.711
Type of infection
Community acquired 72 30.8% 112 48.5% <0.001
Healthcare-associated 126 53.9% 88 38.1% 0.001
Hospital acquired 36 15.4% 31 13.4% 0.546
Admitted from
Home 186 79.5% 215 91.9% <0.001
Healthcare institutions 37 15.8% 17 7.3% 0.004
Other hospitals 11 4.7% 2 0.9% 0.021
Department requesting the blood culture
Emergency department 173 73.9% 172 73.5%
ICU 15 6.4% 11 4.7% 0.420
Other wards 46 19.7% 51 21.8%
Charlson Comorbidity Index
2 120 51.3% 128 54.7% 0.459
>2 114 48.7% 106 45.3%
Source of infection**
Urinary tract 171 73.1% 146 62.4% 0.013
Biliary tract 24 10.3% 32 13.7% 0.255
Intra-abdominal 13 5.6% 18 7.7% 0.353
Neutropenic fever 5 2.1% 12 5.1% 0.084
Other 13 5.6% 21 9% 0.154
Unknown/Not determined 17 7.3% 18 7.7% 0.861
qSOFA N¼217 N ¼212
0-1 148 68.2% 148 69.8% 0.719
2-3 69 31.8% 64 30.2%
Septic shock N¼217 N ¼215
Yes 8 3.7% 7 3.3% 0.807
Neutropenia N¼233 N ¼232
Yes 5 2.2% 13 5.6% 0.053
Presence of an invasive device >24 hours N¼232 N ¼230
Yes 65 28 % 45 19.6% 0.033
Type of invasive device** N¼232 N ¼230
Urinary catheter 52 22.4% 32 13.9% 0.018
Central venous catheter 15 6.5% 14 6.1% 0.867
Other 6 2.6% 4 1.7% 0.751
Antibiotic therapy previous six months N¼220 N ¼231
Yes 137 62.3% 78 33.8% <0.001
Hospital admission abroad N¼222 N ¼233
Yes 13 5.9% 1 0.4% 0.001
History of ESBL-producing microbe
Yes 93 39.7% 2 0.9% <0.001
Readmission within 30 days of discharge N¼205 N ¼219
Yes 61 29.8% 60 27.4% 0.591
Total N¼234 for all variables unless otherwise indicated.
More than one possible option.
Includes pulmonary, gynaecological, skin and soft tissue and other origins.
Table 2. All-cause mortality for patients with ESBL-producing E.
coli compared to non-ESBL-producing E. coli bloodstream
infections.
ESBL-E. coli
(N¼230)
Non-ESBL-E. coli
(N¼234)
N % N % p
0-26 hours 7 3 % 7 3 % 0.974
30 days 25 10.9% 21 9 % 0.495
60 days 37 16.1% 32 13.7% 0.466
90 days 45 19.6% 38 16.2% 0.351
1 year (only 2014-2020) N ¼202 N ¼206
1 year mortality 58 28.7% 55 26.7% 0.650
4 N. HANDAL ET AL.
hospital versus community acquired), urinary tract as
source of infection and septic shock before obtaining
the blood culture, the 30-day mortality OR was 1.6
(95%CI 0.7 3.7, p¼0.248). Thirty-day survival according
to ESBL status is presented in Figure 1. Variables associ-
ated with 30-day mortality are presented in Appendix B.
Time to effective therapy
Effective antibiotic treatment was administered within
24 h to 55.2% (129/234) in the ESBL-group compared to
86.8% (203/234) in the non-ESBL group (Figure 2). A his-
tory of ESBL-colonisation-/infection reduced the time to
administration of the first effective antibiotic, but it was
still delayed compared to the non-ESBL group (Appendix
C). There were missing data for 26 (5.6%) BSIs in which
effective antibiotics were administered, but in which we
could not ascertain the time to administration of the first
effective antibiotic (9 (3.8%) among the ESBL-group and
17 (7.3%) among the non-ESBL group (p¼0.099)). Only
two patients did not receive any antibiotics at all (one in
each group). In the 45 BSIs in whom death occured
within 30 days an effective antibiotic had been adminis-
tered within 3 h and 24 h of obtaining a blood culture in
26 (57.8%) and 35 (77.8%) BSIs, respectively (missing data
for one deceased). Antibiotics administered in relation to
ordering blood cultures are summarised in Appendix D.
Length of hospital stay
The overall unadjusted median length of stay was seven
(IQR 4-10) days in the ESBL-group compared to five (IQR
3-8) days in the non-ESBL group (p¼0.001). In a suba-
nalysis among BSIs of urinary tract origin (n¼317), the
median length of stay increased by two days in the
ESBL group, with a median of six (IQR 4-9) versus four
(IQR 3-7) days in the non-ESBL group (p<0.001). No sig-
nificant difference was observed in the patients with
other sources of infection (n¼151), with a median
length of stay of seven (IQR 3-15) days in the ESBL-
group compared to six (IQR 3.5-14) days in the non-
ESBL-group (p¼0.550) (Figure 3).
Risk factors for ESBL-producing E. coli BSIs
Variables univariatly associated with ESBL-producing BSIs
were healthcare-associated infections, admissions from
other healthcare institutions and hospitals, BSIs of urin-
ary tract origin, indwelling urinary catheters, antibiotic
Figure 1. Thirty-day survival in ESBL-producing E. coli compared to
non-ESBL-producing E. coli blood stream infections.
Figure 2. Time to administration of the first dose of effective antibiotic in ESBL-producing E. coli compared to non-ESBL-producing E. coli
blood stream infections.
INFECTIOUS DISEASES 5
therapy in the previous six months, hospital admission
outside a Nordic country in the previous twelve months
and a history of infection or colonisation with an ESBL-
producing microbe (Table 1). A previous history of ESBL
colonisation/- infection was recorded in 93/234 (39.7%)
ESBL-EC BSIs compared to only 2/234 (0.9%) non-ESBL-
EC BSIs. Among the ESBL-EC BSIs with a documented
history of ESBL-producing microbes, the median time
between the first and the most recent detection of an
ESBL-producing microbe (in any samples) and the cur-
rent BSI was 197 days and 61 days, respectively.
Microbiological findings
Among 468 BSIs, 422 (90.2%) were monomicrobial.
There was no significant difference in the prevalence of
polymicrobial infections between the ESBL and non-
ESBL group (p¼0.280). E. coli was isolated from urinary
tract samples in 242/317 (76.3%) BSIs diagnosed as origi-
nating in the urinary tract.
The median time to blood culture positivity for mono-
microbial BSIs with recorded laboratory data (n¼408)
was 11.8 h (IQR 10.6 13.8 h, range 4.4 105.1 h), with
no significant difference between the ESBL- and non-
ESBL groups (p¼0.522).
Antimicrobial resistance results are shown in
Appendix E. Co-resistance with antibiotics outside the
beta-lactam group was higher among the ESBL-EC
isolates, especially for ciprofloxacin, gentamicin and tri-
methoprim-sulfamethoxazole.
Discussion
The main finding of this single centre retrospective case-
control study was the lack of a significant difference in
30-day mortality between ESBL-EC and non-ESBL-EC
BSIs. This occurred even though treatment with an
effective antibiotic often was delayed in the ESBL-EC
BSIs. Furthermore, ESBL-production increased the length
of hospital stay in E. coli BSIs of urinary tract origin.
The observed 30-day mortality of 9.9% was among the
lower rates compared to previous studies [19,20,30–34],
including a review of E. coli BSIs in adults in high-income
countries that reported a pooled case-fatality rate of
12.4% [2]. Mortality rates might vary depending on
numerous factors, including whether studies are restricted
to community- or hospital acquired infections, certain
patient groups as well as the infectious origins of BSIs. In
our study, a large proportion of the BSIs were of urinary
tract origin and community acquired, both factors shown
to be associated with a reduced mortality [19,20,34–36].
After adjusting for confounders, there was an increased
30-day mortality OR of 1.6 in the ESBL-group, but this did
not reach statistical significance. This finding is in accord-
ance with other studies which did not observe any
impact of ESBL-production on mortality in E. coli BSIs
Figure 3. Length of stay of ESBL-producing E. coli compared to non-ESBL-producing E. coli blood stream infections according to source of
infection.
6 N. HANDAL ET AL.
[18–21]. However, several meta-analyses have found an
increased risk of mortality associated with third gener-
ation resistant Enterobacterales, reporting pooled, mostly
unadjusted OR of 1.5 2, albeit with important limitations
[13–16]. As our study was powered according to the ear-
liest meta-analyses with an estimated risk ratio of
approximately two [12,37], and the 30-day mortality in
the ESBL-EC BSIs was low compared to other estimates, a
type two error cannot be ruled out.
The lack of association between ESBL-production and
mortality despite the delayed administration of effective
antibiotics in a significant proportion of the ESBL-EC BSIs
may be explained by several factors. First, most deaths
within 30 days occurred in patients who did receive
effective antibiotics early. Second, almost one third of the
30-day mortality occurred within 26 h after the blood cul-
tures had been obtained, similar to findings in an English
national study of E. coli BSIs [20]. This suggests that some
deaths might not be preventable even with effective anti-
biotic treatment [38]. Third, a high proportion of the BSIs
in this study were of urinary tract origin. Since several
antibiotics accumulate in the urinary tract, some antibiot-
ics declared resistant in vitro might actually have been
effective in vivo and active treatment achieved earlier
than recorded. Finally, the study registered all-cause mor-
tality, so not all deaths were necessarily caused by E. coli
infection. Similarly, other studies have reported a lack of
association between initially delayed effective antibiotic
treatment and mortality in antimicrobial resistant E. coli
[19,29,39–41]. Nevertheless, this is still a controversial
topic and likely impacted by a number of confounding
factors, as other studies have found a clear association
between delayed antibiotic therapy and risk of death
[42,43]. The Surviving Sepsis Campaign has concluded
that antibiotic treatment should be administered within
one hour in adults with septic shock or a high likelihood
of sepsis, but may be delayed in order to ascertain the
diagnosis in adults with possible sepsis without shock
(preferably no more than three hours) [44].
The median length of stay increased by two days in
ESBL-EC BSIs originating from the urinary tract compared
to non-ESBL-EC BSIs. This is consistent with other studies
which have demonstrated an increased length of stay in
patients with bacteraemia caused by third generation
cephalosporin-resistant E. coli [14,15,19,29,45]. Patients with
BSIs of urinary tract origin had a shorter length of stay
compared to BSIs of other origins, presumably because
these patients often are discharged with oral antibiotics
after only a few days of intravenous therapy. The delayed
treatment with an effective parenteral antibiotic thus
prolongs the stay in the ESBL-EC group more than the
non-ESBL-EC. In addition, ESBL-producing microbes are
often co-resistant to oral antibiotics, sometimes leaving
parenteral therapy the only treatment option. Considering
the rising antimicrobial resistance, alternative solutions for
parenteral administration of antibiotics outside hospitals
such as in outpatient clinics, home nursing care or nursing
homes are important to mitigate the effect of ESBL-pro-
duction on the length of hospital stay.
Compared to non-ESBL-EC BSIs, patients with ESBL-EC
BSIs were more often admitted from other healthcare
institutions and hospitals, had healthcare-associated
infections, previous antibiotic exposure, hospital admis-
sion abroad, an indwelling urinary catheter or BSIs of a
urinary tract origin. These have been identified as risk
factors of infections with ESBL-producing pathogens in
other studies [29,30,46–48]. Notably, 39.7% of the ESBL-
EC BSIs had a recent history of ESBL-colonisation/-
infection compared to almost none in the non-ESBL-EC
BSIs. This supports data from a Swedish population-
based study which found that colonisation is a substan-
tial risk factor for subsequent BSIs with ESBL-producing
Enterobacterales, and that this risk declines rapidly dur-
ing the first year after detection [49].
The median time between blood culture sampling until
registration of growth in this study was 11.8h. Depending
upon laboratory opening hours, current diagnostics may
provide susceptibility results of E. coli within 18-24 h after
blood culture sampling in a substantial proportion of BSIs
[50]. Developing rapid, culture-independent diagnostics
could further optimise patient treatment and prevent
unnecessary use of broad-spectrum antibiotics [51].
There are several limitations to this study. First, the
retrospective design means that information bias was
most likely present, especially since some variables were
easier to collect from the most recent period when the
electronic medication records had been introduced at our
hospital. Second, there has been a national campaign to
secure rapid treatment of sepsis during the end of the
study period. In an effort to reduce these biases alike in
the ESBL- and non-ESBL-groups, the controls were
matched by year of blood culture sampling. Third, both
mortality and length of stay were recorded for all causes,
meaning that not all associations were necessarily caused
by E. coli blood stream infections. Fourth, only a small
proportion of patients presented with septic shock at the
time of obtaining the blood culture, reflecting the strict
criteria we used for recording septic shock in the study
and was thus likely underreported. Fifth, further analysis
of mortality and the source of infection was hampered by
INFECTIOUS DISEASES 7
the large number of deaths occurring with an unknown
source of infection. The proportion of unkown origin of
infections was similar in the ESBL-EC and non-ESBL-EC
BSIs. Sixth, information on limitations of life-sustaining
treatment was not collected systematically, thus any influ-
ence on the results cannot be assessed. Finally, as a sin-
gle centre study from a university hospital, our data may
not be transferable to other settings, especially consider-
ing the many factors involved in diagnosing and treating
sepsis that may affect outcomes.
Conclusion
Even though effective antibiotic administration often was
delayed in the ESBL-EC BSIs, the difference in 30-day mor-
tality between the ESBL-EC and non-ESBL-EC BSIs did not
reach a level of statistical significance. In a setting with a
low ESBL-prevalence, our findings support the continued
use of empiric carbapenem-sparing antibotic regimens in
patients with E. coli bloodstream infections, although indi-
vidual assessments of risk factors of invasive ESBL-produc-
tion as well as the severity of illness must be taken into
account when choosing the empiric regimen.
Disclosure statement
The authors report no conflict of interest.
Ethical approval
Ethical approval was granted by the Norwegian Regional
Committee for Medical and Health Research Ethics (REK reference
2019/918) with a waiver of informed consent and from the
Akershus University Hospital’s Data Protection Official (19/07915).
Funding
Preliminary work received funding from the research network
Turning the Tide of Antimicrobial Resistance and the Norwegian
Society for Medical Microbiology. The main study received fund-
ing from Helse Sør-Øst Regional Health Authority (grant 2020012).
ORCID
Nina Handal http://orcid.org/0000-0001-6129-3036
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10 N. HANDAL ET AL.
Appendix A: Additional clinical data of patients with E. coli blood stream infections
Appendix B: Variables associated with 30-day mortality
ESBL-E. coli (N*5234) Non-ESBL-E. coli (N*5234)
N % N % p
Comorbidities**
Myocardial infarction 36 15.4% 33 14.1% 0.696
Congestive heart failure 20 8.6% 17 7.3% 0.607
Peripheral vascular disease 23 9.8% 20 8.6% 0.631
Cerebrovascular disease 37 15.8% 34 14.5% 0.699
Dementia 11 4.7% 10 4.3% 0.823
Chronic pulmonary disease 48 20.5% 43 18.4% 0.559
Connective tissue disease 21 9 % 11 4.7% 0.067
Ulcer disease 7 3 % 13 5.6% 0.170
Mild liver disease 16 6.8% 5 2.1% 0.014
Moderate/severe liver disease 7 3 % 3 1.3% 0.338
Diabetes mellitus without complications 59 25.2% 44 18.8% 0.094
Diabetes mellitus with complications 18 7.7% 10 4.3% 0.119
Hemi-/Paraplegia 10 4.3% 5 2.1% 0.189
Chronic renal disease 45 19.2% 43 18.4% 0.813
Non-metastatic cancer 48 20.5% 51 21.8% 0.734
Metastatic cancer 19 8.1% 29 12.4% 0.128
Leukaemia 6 2.6% 9 3.9% 0.431
Lymphoma 8 3.4% 10 4.3% 0.631
HIV/AIDS 0 0
Immunosuppressive therapy N¼231 N ¼230
Yes 62 26.8% 63 27.4% 0.894
Organ or haematopoietic stem cell transplantation
Yes 18 7.7% 14 6% 0.464
Dialysis previous 12 months N¼232 N ¼234
Yes 10 4.3% 4 1.7% 0.112
Surgery or invasive procedure previous 30 days N¼230 N ¼229
Yes 71 30.9% 58 25.3% 0.187
Total N¼234 for all variables unless otherwise indicated.
More than one possible option.
Deceased (N*546) Alive (N*5418) Unadjusted OR
N % N % (95% CI) p
Median age (IQR), years 75 (64-81) 72 (61-80) -0.140
Sex, female 26 56.5% 190 45.5% 1.6 (0.8 2.9) 0.154
ESBL-producing E. coli BSI 25 54.4% 205 49 % 1.2 (0.7 2.3) 0.495
Charlson Comorbidity Index 210 21.7% 234 56 % Base
Charlson Comorbidity Index >236 78.3% 184 44 % 4.6 (2.2 9.6) <0.001
Type of infection N¼46 N ¼415
Community acquired 6 13 % 175 42.2% Base
Health care associated 26 56.5% 188 45.3% 4 (1.6 - 10) 0.003
Hospital acquired 14 30.4% 52 12.5% 7.9 (2.9 21.5) <0.001
Source of infection
Urinary tract 15 32.6% 299 71.5% 0.2 (0.1 0.4) <0.001
Biliary tract 1 2.2% 54 12.9% 0.1 (0 1.1) 0.033
Intra-abdominal 8 17.4% 23 5.5% 3.6 (1.5 8.7) 0.002
Neutropenic fever 4 8.7% 13 3.1% 3 (0.99.6) 0.056
Other 7 15.2% 27 6.5% 2.6 (1.1 6.4) 0.031
Unknown/Not determined 15 32.6% 20 4.8% 9.6 (4.3 21.5) <0.001
qSOFA N¼40 N ¼385
0-1 16 40 % 276 71.7% Base
2-3 24 60 % 109 28.3% 3.8 (1.9 7.5) <0.001
Septic shock N¼34 N ¼394
Yes 7 20.6% 8 2% 12.5 (4 38.8) <0.001
Neutropenia N¼44 N ¼417
Yes 4 9.1% 14 3.4% 2.9 (0.9 9.2) 0.062
Immunosuppressive therapy N¼44 N ¼413
Yes 15 34.1% 110 26.6% 1.4 (0.7 to 2.8) 0.292
Surgery/invasive procedure previous 30 days N¼45 N¼410
Yes 17 37.8% 112 27.3% 1.6 (0.8 to 3.1) 0.140
Time to administration of first effective antibiotic N¼45 N¼393
03 hours 26 57.8% 213 54.2% Base
>3 - 12 hours 3 6.7% 44 11.2% 0.6 (0.2 1.9) 0.357
>12 - 24 hours 6 13.3% 37 9.4% 1.3 (0.5 3.4) 0.559
>24 - 48 hours 0 71 18.1%
>48 72 hours 3 6.7% 13 3.3% 1.9 (0.5 - 7) 0.344
>72 hours 1 2.2% 8 2 % 1 (0.18.5) 0.982
No effective treatment 6 13.3% 7 1.8% 7 (2.2 22.5) 0.001
¼Total N unless otherwise indicated.
More than one possible option.
INFECTIOUS DISEASES 11
Appendix C: Time to administration of the first in vitro susceptible antibiotic
Appendix D: Antibiotics administered in relation to ordering blood cultures
The figure shows the first antibiotic treatment prescribed in the hospital in relation to ordering blood cultures, irrespective of in vitro
susceptibility results. For patients in which blood cultures were ordered by the Emergency department, the antibiotic is the first admin-
istered upon arrival at the hospital. For inpatients, the antibiotic prescribed in relation to obtaining the blood culture is recorded (e.g. if
an antibiotic treatment was changed to a new treatment). For BSIs treated with combination therapy (e.g. aminoglycosides and penicil-
lins), only the antibiotic with the broadest gram-negative coverage is included in the figure.
ESBL-E. coli (N ¼234) Non-ESBL - E. coli (N ¼234)
All BSIs N % of N Cum. %N% of N Cum. %
0-3 hours 80 34.2% 34.2% 162 69.2% 69.2%
>3-12 hours 21 9 % 43.2% 26 11.1% 80.3%
>12-24 hours 28 12 % 55.2% 15 6.4% 86.7%
>24 48 hours 63 26.9% 82.1% 9 3.9% 90.6%
>48 72 hours 16 6.8% 88.9% 0 90.6%
>72 hours 8 3.4% 92.3% 1 0.4% 91 %
No effective antibiotic 9 3.9% 96.2% 4 1.7% 92.7%
History of ESBL (N 5 93) No history of ESBL (N 5 141)
Only ESBL-EC BSIs N % of N Cum. %N% of N Cum. %
0-3 hours 39 41.9% 41.9% 41 29.1% 29.1%
>3-12 hours 11 11.8% 53.7% 10 7.1% 36.2%
>12-24 hours 15 16.1% 69.8% 13 9.2% 45.4%
>24 48 hours 16 17.2% 87 % 47 33.3% 78.7%
>48 72 hours 4 4.3% 91.3% 12 8.5% 87.2%
>72 hours 3 3.2% 94.5% 5 3.6% 90.8%
No effective antibiotic 4 4.3% 98.8% 5 3.6% 94.4%
12 N. HANDAL ET AL.
Appendix E: Number and proportion of E. coli isolates resistant to antibiotics
ESBL - E. coli (N5234) Non-ESBL- E. coli (N5234)
Antibiotic N % resistant N % resistant
Trimethoprim-sulfamethoxazole 165 70.5% 43 18.4%
Ciprofloxacin 174 74.4% 19 8.1%
Ampicillin iv 234 100 % 76 32.5%
Cefuroxime iv 234 100 % 5 2.1%
Cefotaxime 234 100 % 0
Ceftazidime 205 87.6% 0
Gentamicin 114 48.7% 6 2.6%
Meropenem 0 0
Piperacillin-tazobactam 11 4.7% 2 0.9%
Aztreonam 198 84.6% 0
Resistance determined according to EUCAST breakpoint tables at the time of reporting.
INFECTIOUS DISEASES 13
... ESBL E. coli has increased eight times in the last decade with the highest prevalence in Asia and Africa reaching 70% (Raffelsberger et al., 2023). High mortality, long hospital stays, and increasing treatment costs are risks of ESBL-producing Enterobacteriaceae infection (Handal et al., 2023). Wild bats have never received antibiotic therapy, and the presence of AMR in bats indicates the level of AMR in the environment (Huy et al., 2023). ...
Article
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Background The blaTEM, blaCTX-M, and blaSHV are the result of mutations in the extended-spectrum beta-lactamases (ESBL) enzyme, which can be seen genotypically. Wild bats have never received antibiotic therapy, and the presence of antimicrobial-resistance (AMR) in bats indicates the level of AMR in the environment, the circulation of ESBL Escherichia coli between humans or animals in Indonesia and wild animals is still not widely known. Whole genome sequencing is used to determine the circulation of ESBL Escherichia coli in detail. Aim Our research aims to determine the genetic level of relatedness of blaTEM samples of cave bat isolates in West Nusa Tenggara, Indonesia. Methods This research is a laboratory exploration to detect ESBL genes in guano isolate samples from cave bats in West Nusa Tenggara Province, Indonesia. Samples were obtained by swabbing the rectum of live bats caught from caves on the island of West Nusa Tenggara Province, namely, Lawah Cave and Saung Pengembur Cave. A total of 50 samples from Lawah Cave and 85 samples from Saung Pengembur Cave were identified to find an E. coli bacteria using Gram-stain test and IMViC for biochemical test from isolates, which showed a metallic green color on eosin methylene blue agar media. Escherichia coli isolates were tested for sensitivity using antibiotics, followed by a polymerase chain reaction test showed positive results for the blaTEM gene and phylogenetic analysis to determine relationships. Results Phylogenetic analysis shows a genetic closeness between the isolates from Lawah Cave and Saung Pengembur Cave is 95%. Between samples from Lawah and Saung Pengembur Cave, we found that there was a closeness of 86% to the E. coli strain A2-2 sample from Thailand with the code OR680712.1. at GenBank. Conclusion The blaTEM gene characteristics of bat isolates from West Nusa Tenggara are close to pig isolates from Thailand. The genetic proximity between blaTEM gene samples from Lawah Cave and Saung Pengembar Cave analyzed using the phylogenetic tree shows a closeness to samples from Thailand, even though they come from samples with distant locations, which can have a negative impact on human health.
... Nevertheless, our findings are consistent with a systematic review (Ling et al., 2021) that genotypically confirmed ESBL producers were not associated with a higher frequency of septic shock. The mortality rate in the current study is within the range reported with Enterobacteriaceae bacteremia (Heng et al., 2018;de Lastours et al., 2020;Abubakar et al., 2022;Handal et al., 2024). The subpopulation analysis by Son et al. (2021) found that bla CTX-M presence in ESBL-negative phenotypes had higher mortality (8% vs 27%, p = 0.07) and twice prolonged hospitalization (27.4 ± 24.5 vs 14.4 ± 7.5, p = 0.014) than those without the genotype. ...
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Background Antimicrobial resistance (AMR) can lead to fatal consequences. AMR genes carriage by phenotypically susceptible bacteria, such as Extended-Spectrum β-Lactamases (ESBL)s in Enterobacteriaceae, have potential implications for AMR spread and therapeutic outcomes. This phenomenon should be investigated. Methods Positive blood cultures from hospitalized patients in a Malaysian tertiary center between April 2022 and March 2023 were reviewed. A total of 137 clinical isolates of Escherichia coli (E.coli), Klebsiella pneumoniae (K.pneumoniae), and Klebsiella oxytoca were included. The antibiotic susceptibility and ESBL phenotypes were determined by disk diffusion method and the identification of genotypes by multiplex polymerase chain reaction. The clinical characteristics and outcome information were extracted by reviewing patients’ medical records to evaluate the clinical significance of the ESBL genotype-positive but phenotype-negative isolates in bacteremia. Results All 137 isolates were positive for at least one genotype (bla CTX-M, n = 71, 51.8%; bla SHV, n = 87, 63.5%; bla TEM, n = 95, 69.3%; bla OXA-1, n = 38, 27.7%). While bla CTX-M was proportionately higher in the ESBL phenotype-positive isolates than ESBL phenotype-negative isolates (33/37, 89.2% vs 38/100, 38%; p < 0.001), more than half of those harboring bla CTX-M remained susceptible to third-generation cephalosporins (3GC). The sensitivity (Sen) of bla CTX-M for ESBL phenotypes prediction was 89.19% (95% confidence interval [CI], 74.58 - 96.97%); however, specificity (Sp) was low (46.47%; 95% CI 39.75 - 53.32). The patient characteristics were similar among 98 ESBL phenotype-negative cases, except that the non-bla CTX-M carrier group had significantly more renal impairment (0/37 vs 7/61, p = 0.043) and gastrointestinal sources of bacteremia (9/37 vs 27/61, p = 0.047). No differences were observed in infection severity, in-hospital mortality, and length of stay (LOS) between the bla CTX-M and non-bla CTX-M carrier groups. Conclusion The current study provides insight into the gene carriage in E.coli and Klebsiella species clinical isolates, including bla CTX-M genotypes in antibiotic-susceptible strains from a Malaysian hospital. The ESBL encoding genotypes such as bla CTX-M presented substantially beyond one-third of the ESBL phenotype-negative or 3GC susceptible E.coli and K.pneumoniae isolated from bloodstream infection. Although clinical outcomes were not worsened with bla CTX-M genotype-positive but ESBL phenotype-negative isolates in bacteremia, the potential implications for AMR spread deserve further investigation.
... They concluded that delays in the initiation of appropriate antibiotic therapy in these patients were associated with worse clinical outcomes including death [36]. This study highlights the importance of early recognition of infections involving ESBL-E, although this idea has been recently challenged without mirrored results [37]. Regardless of mortality risk, limitations such as inaccessibility to rapid diagnostics, continue to be a challenge for many healthcare systems globally. ...
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Antimicrobial resistance is a global threat that requires urgent attention to slow the spread of resistant pathogens. The United States Centers for Disease Control and Prevention (CDC) has emphasized clinician-driven antimicrobial stewardship approaches including the reporting and proper documentation of antimicrobial usage and resistance. Additional efforts have targeted the development of new antimicrobial agents, but narrow profit margins have hindered manufacturers from investing in novel antimicrobials for clinical use and therefore the production of new antibiotics has decreased. In order to combat this, both antimicrobial drug discovery processes and healthcare reimbursement programs must be improved. Without action, this poses a high probability to culminate in a deadly post-antibiotic era. This review will highlight some of the global health challenges faced both today and in the future. Furthermore, the new Infectious Diseases Society of America (IDSA) guidelines for resistant Gram-negative pathogens will be discussed. This includes new antimicrobial agents which have gained or are likely to gain FDA approval. Emphasis will be placed on which human pathogens each of these agents cover, as well as how these new agents could be utilized in clinical practice.
... E. coli are human pathogenic Gram-negative bacteria that are widely involved in blood stream infections [30]. To evaluate the antimicrobial efficacy of CuO-TiO 2 -PP, the rate of survival of E. coli (% viability) was determined. ...
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The leading cause of increased mortality rates is infections from implanted medical devices, with catheters accounting for more than 80% of these infections. Polypropylene (PP) composites with antimicrobial properties were developed by adding binary mixed oxide (CuO-TiO2). The outcomes demonstrated that the spreading and encapsulation of CuO-TiO2 particles in the PP matrix was much better with the incorporation of PP-g-MAH compatibilizer. Matrix crystallinity is affected by the addition of compatibilizers, the amount of CuO-TiO2, and heat treatments. The synergy effect of CuO-TiO2 as antimicrobial agents was analyzed. The antibacterial efficacy’s reliance on matrix crystallinity is elucidated in relation with various heat treatments, PP-g-MAH compatibilizer, and amount of CuO-TiO2. PP made of binary mixed oxides (e.g., CuO and TiO2) and 3 wt% PP-g-MAH that was processed with a low degree of crystallinity increased the material’s capability of effectively rendering plausible antimicrobial species (e.g., •O²⁻, •OH⁻, and Cu²⁺) with excellent antimicrobial efficacy towards Escherichia coli (E. coli) and Staphylococcus aureus (S. aureus). This innovative composite, CuO-TiO2-PP, offers new perspectives on managing bloodstream infections associated with catheter use. Graphical Abstract
... Globally, there has been an eightfold increase in the prevalence of ESBL-producing E. coli intestinal carriage within communities over the past two decades [69]. Infections caused by these ESBL-producing microorganisms are associated with elevated mortality rates [70] and prolonged hospitalization periods, particularly in cases of bloodstream infections originating from the urinary tract [71]. Furthermore, it is believed that the COVID-19 pandemic may have contributed to a heightened dissemination of ESBL-producing Enterobacteriales [72]. ...
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Antimicrobials serve as crucial treatments in both veterinary and human medicine, aiding in the control and prevention of infectious diseases. However, their misuse or overuse has led to the emergence of antimicrobial resistance, posing a significant threat to public health. This review focuses on extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli in animals and their associated food products, which contribute to the proliferation of antimicrobial-resistant strains. Recent research has highlighted the presence of ESBL-producing E. coli in animals and animal-derived foods, with some studies indicating genetic similarities between these isolates and those found in human infections. This underscores the urgent need to address antimicrobial resistance as a pressing public health issue. More comprehensive studies are required to understand the evolving landscape of ESBLs and to develop strategic public health policies grounded in the One Health approach, aiming to control and mitigate their prevalence effectively.
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The leading cause of increased mortality rates is infections from implanted medical devices, with catheters accounting for more than 80% of these infections. Polypropylene (PP) composites with antimicrobial properties were developed by adding binary mixed oxide (CuO-TiO 2). The outcomes demonstrated that the spreading and encapsulation of CuO-TiO 2 particles in the PP matrix was much better with incorporation of PP-g-MAH compatibilizer. Matrix crystallinity is affected by addition of compatibilizers, the amount of CuO-TiO 2 , and heat treatments. The synergy effect of CuO-TiO 2 as antimicrobial agents was analyzed. The antibacterial e cacy's reliance on matrix crystallinity is elucidated in relation with various heat treatments, PP-g-MAH compatibilizer, and amount of CuO-TiO 2. PP made of binary mixed oxides (e.g., CuO and TiO 2) and 3 wt% PP-g-MAH that was processed with a low degree of crystallinity increased the material's capability of effectively rendering plausible antimicrobial species (e.g., •O 2− , •OH − , and Cu 2+) with excellent antimicrobial e cacy towards Escherichia coli (E. coli) and Staphylococcus aureus (S. aureus). This innovative composite, CuO-TiO 2-PP, offers new perspectives on managing bloodstream infections associated with catheter use.
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Background The aim of this study was to compare short- and long-term mortality among patients with urosepsis caused by Escherichia coli susceptibile (EC-SC) and resistant (EC-RC) to 3rd generation cephalosporins. Methods A retrospective cohort study that included all patients with E. coli urosepsis admitted to a 700-bed hospital from January 2014 until December 2019. Mortality up to 30 days, 6 months and 1 year was assessed using logistic multivariate regression analysis and Cox regression analysis. Results A total of 313 adult were included, 195 with EC-SC and 118 patients with EC-RC. 205 were females (74%), mean age was 79 (SD 12) years. Mean Charlson score was 4.93 (SD 2.18) in the EC-SC group and 5.74 (SD 1.92) in the EC-RC group. Appropriate empiric antibiotic therapy was initiated in 245 (78.3%) patients, 100% in the EC-SC group but only 42.5% in the EC-RC group. 30-day mortality occurred in 12 (6.3%) of EC-SC group and 15 (12.7%) in the EC-RC group. Factors independently associated with 30-day mortality were Charlson score, Pitt bacteremia score, fever upon admission and infection with a EC-RC. Appropriate antibiotic therapy was not independently associated with 30-day mortality. Differences in mortality between groups remained significant one year after the infection and were significantly associated with the Charlson co-morbidity score. Conclusions Mortality in patients with urosepsis due to E. coli is highly affected by age and comorbidities. Although mortality was higher in the EC-RC group, we could not demonstrate an association with inappropriate empirical antibiotic treatment. Mortality remained higher at 6 months and 1 year long after the infection resolved but was associated mainly with co-morbidity.
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Objectives: Escherichia coli bloodstream infections have shown a sustained increase in England, for reasons that are unknown. Furthermore, the contribution of MDR lineages such as ST131 to overall E. coli disease burden and outcome is undetermined. Methods: We genome-sequenced E. coli blood isolates from all patients with E. coli bacteraemia in north-west London from July 2015 to August 2016 and assigned MLST genotypes, virulence factors and AMR genes to all isolates. Isolate STs were then linked to phenotypic antimicrobial susceptibility, patient demographics and clinical outcome data to explore relationships between the E. coli STs, patient factors and outcomes. Results: A total of 551 E. coli genomes were analysed. Four STs (ST131, 21.2%; ST73, 14.5%; ST69, 9.3%; and ST95, 8.2%) accounted for over half of cases. E. coli genotype ST131-C2 was associated with phenotypic non-susceptibility to quinolones, third-generation cephalosporins, amoxicillin, amoxicillin/clavulanic acid, gentamicin and trimethoprim. Among 300 patients from whom outcome was known, an association between the ST131-C2 lineage and longer length of stay was detected, although multivariable regression modelling did not demonstrate an association between E. coli ST and mortality. Several unexpected associations were identified between gentamicin non-susceptibility, ethnicity, sex and adverse outcomes, requiring further research. Conclusions: Although E. coli ST was associated with defined antimicrobial non-susceptibility patterns and prolonged length of stay, E. coli ST was not associated with increased mortality. ST131 has outcompeted other lineages in north-west London. Where ST131 is prevalent, caution is required when devising empiric regimens for suspected Gram-negative sepsis, in particular the pairing of β-lactam agents with gentamicin.
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Background Antimicrobial resistance (AMR) poses a major threat to human health around the world. Previous publications have estimated the effect of AMR on incidence, deaths, hospital length of stay, and health-care costs for specific pathogen–drug combinations in select locations. To our knowledge, this study presents the most comprehensive estimates of AMR burden to date. Methods We estimated deaths and disability-adjusted life-years (DALYs) attributable to and associated with bacterial AMR for 23 pathogens and 88 pathogen–drug combinations in 204 countries and territories in 2019. We obtained data from systematic literature reviews, hospital systems, surveillance systems, and other sources, covering 471 million individual records or isolates and 7585 study-location-years. We used predictive statistical modelling to produce estimates of AMR burden for all locations, including for locations with no data. Our approach can be divided into five broad components: number of deaths where infection played a role, proportion of infectious deaths attributable to a given infectious syndrome, proportion of infectious syndrome deaths attributable to a given pathogen, the percentage of a given pathogen resistant to an antibiotic of interest, and the excess risk of death or duration of an infection associated with this resistance. Using these components, we estimated disease burden based on two counterfactuals: deaths attributable to AMR (based on an alternative scenario in which all drug-resistant infections were replaced by drug-susceptible infections), and deaths associated with AMR (based on an alternative scenario in which all drug-resistant infections were replaced by no infection). We generated 95% uncertainty intervals (UIs) for final estimates as the 25th and 975th ordered values across 1000 posterior draws, and models were cross-validated for out-of-sample predictive validity. We present final estimates aggregated to the global and regional level. Findings On the basis of our predictive statistical models, there were an estimated 4·95 million (3·62–6·57) deaths associated with bacterial AMR in 2019, including 1·27 million (95% UI 0·911–1·71) deaths attributable to bacterial AMR. At the regional level, we estimated the all-age death rate attributable to resistance to be highest in western sub-Saharan Africa, at 27·3 deaths per 100 000 (20·9–35·3), and lowest in Australasia, at 6·5 deaths (4·3–9·4) per 100 000. Lower respiratory infections accounted for more than 1·5 million deaths associated with resistance in 2019, making it the most burdensome infectious syndrome. The six leading pathogens for deaths associated with resistance (Escherichia coli, followed by Staphylococcus aureus, Klebsiella pneumoniae, Streptococcus pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa) were responsible for 929 000 (660 000–1 270 000) deaths attributable to AMR and 3·57 million (2·62–4·78) deaths associated with AMR in 2019. One pathogen–drug combination, meticillin-resistant S aureus, caused more than 100 000 deaths attributable to AMR in 2019, while six more each caused 50 000–100 000 deaths: multidrug-resistant excluding extensively drug-resistant tuberculosis, third-generation cephalosporin-resistant E coli, carbapenem-resistant A baumannii, fluoroquinolone-resistant E coli, carbapenem-resistant K pneumoniae, and third-generation cephalosporin-resistant K pneumoniae. Interpretation To our knowledge, this study provides the first comprehensive assessment of the global burden of AMR, as well as an evaluation of the availability of data. AMR is a leading cause of death around the world, with the highest burdens in low-resource settings. Understanding the burden of AMR and the leading pathogen–drug combinations contributing to it is crucial to making informed and location-specific policy decisions, particularly about infection prevention and control programmes, access to essential antibiotics, and research and development of new vaccines and antibiotics. There are serious data gaps in many low-income settings, emphasising the need to expand microbiology laboratory capacity and data collection systems to improve our understanding of this important human health threat. Funding Bill & Melinda Gates Foundation, Wellcome Trust, and Department of Health and Social Care using UK aid funding managed by the Fleming Fund.
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We evaluated the incidence, outcomes, and causative agents of bloodstream infections (BSI) in Finland during 2004–2018 by using data from the national registries. We identified a total of 173,715 BSIs; annual incidence increased from 150 to 309 cases/100,000 population. BSI incidence rose most sharply among persons >80 years of age. The 1-month case-fatality rate decreased from 13.0% to 12.6%, but the 1-month all-cause mortality rate rose from 20 to 39 deaths/100,000 population. BSIs caused by Escherichia coli increased from 26% to 30% of all BSIs. BSIs caused by multidrug-resistant microbes rose from 0.4% to 2.8%, mostly caused by extended-spectrum β-lactamase-producing E. coli. We observed an increase in community-acquired BSIs, from 67% to 78%. The proportion of patients with severe underlying conditions rose from 14% to 23%. Additional public health and healthcare prevention efforts are needed to curb the increasing trend in community-acquired BSIs and antimicrobial drug–resistant E. coli.
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Background: The clonal diversity underpinning trends in multidrug resistant Escherichia coli causing bloodstream infections remains uncertain. We aimed to determine the contribution of individual clones to resistance over time, using large-scale genomics-based molecular epidemiology. Methods: This was a longitudinal, E coli population, genomic, cohort study that sampled isolates from 22 512 E coli bloodstream infections included in the Norwegian surveillance programme on resistant microbes (NORM) from 2002 to 2017. 15 of 22 laboratories were able to share their isolates, and the first 22·5% of isolates from each year were requested. We used whole genome sequencing to infer the population structure (PopPUNK), and we investigated the clade composition of the dominant multidrug resistant clonal complex (CC)131 using genetic markers previously reported for sequence type (ST)131, effective population size (BEAST), and presence of determinants of antimicrobial resistance (ARIBA, PointFinder, and ResFinder databases) over time. We compared these features between the 2002-10 and 2011-17 time periods. We also compared our results with those of a longitudinal study from the UK done between 2001 and 2011. Findings: Of the 3500 isolates requested from the participating laboratories, 3397 (97·1%) were received, of which 3254 (95·8%) were successfully sequenced and included in the analysis. A significant increase in the number of multidrug resistant CC131 isolates from 71 (5·6%) of 1277 in 2002-10 to 207 (10·5%) of 1977 in 2011-17 (p<0·0001), was the largest clonal expansion. CC131 was the most common clone in extended-spectrum β-lactamase (ESBL)-positive isolates (75 [58·6%] of 128) and fluoroquinolone non-susceptible isolates (148 [39·2%] of 378). Within CC131, clade A increased in prevalence from 2002, whereas the global multidrug resistant clade C2 was not observed until 2007. Multiple de-novo acquisitions of both blaCTX-M ESBL-encoding genes in clades A and C1 and gain of phenotypic fluoroquinolone non-susceptibility across the clade A phylogeny were observed. We estimated that exponential increases in the effective population sizes of clades A, C1, and C2 occurred in the mid-2000s, and in clade B a decade earlier. The rate of increase in the estimated effective population size of clade A (Ne=3147) was nearly ten-times that of C2 (Ne=345), with clade A over-represented in Norwegian CC131 isolates (75 [27·0%] of 278) compared with the UK study (8 [5·4%] of 147 isolates). Interpretation: The early and sustained establishment of predominantly antimicrobial susceptible CC131 clade A isolates, relative to multidrug resistant clade C2 isolates, suggests that resistance is not necessary for clonal success. However, even in the low antibiotic use setting of Norway, resistance to important antimicrobial classes has rapidly been selected for in CC131 clade A isolates. This study shows the importance of genomic surveillance in uncovering the complex ecology underlying multidrug resistance dissemination and competition, which have implications for the design of strategies and interventions to control the spread of high-risk multidrug resistant clones. Funding: Trond Mohn Foundation, European Research Council, Marie Skłodowska-Curie Actions, and the Wellcome Trust.
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Background Assessment of the burden of disease due to antimicrobial-resistant Escherichia coli infections facilitates understanding the scale of the problem and potential impacts, and comparison to other diseases, which allows prioritization of research, surveillance, and funding. Using systematic review and meta-analysis methodology, the objectives were to evaluate whether humans with antimicrobial-resistant E. coli infections experience increases in measures of health or healthcare system burden when compared to susceptible E. coli infections. Methods Comprehensive literature searches were performed in four primary and seven grey literature databases. Analytic observational studies of human E. coli infections that assessed the impact of resistance to third/fourth/fifth-generation cephalosporins, resistance to quinolones, and/or multidrug resistance on mortality, treatment failure, length of hospital stay and/or healthcare costs were included. Two researchers independently performed screening, data extraction, and risk of bias assessment. When possible, random effect meta-analyses followed by assessment of the confidence in the cumulative evidence were performed for mortality and length of hospital stay outcomes, and narrative syntheses were performed for treatment failure and healthcare costs. Results Literature searches identified 14,759 de-duplicated records and 76 articles were included. Based on 30-day and all-cause mortality meta-analyses, regardless of the type of resistance, there was a significant increase in the odds of dying with resistant E. coli infections compared to susceptible infections. A summary mean difference was not presented for total length of hospital stay meta-analyses due to substantial to considerable heterogeneity. Since small numbers of studies contributed to meta-analyses for bacterium-attributable mortality and post-infection length of hospital stay, the summary results should be considered with caution. Studies contributing results for treatment failure and healthcare costs had considerable variability in definitions and reporting. Conclusions Overall, resistant E. coli infections were associated with significant 30-day and all-cause mortality burden. More research and/or improved reporting are necessary to facilitate quantitative syntheses of bacterium-attributable mortality, length of hospital stay, and hospital costs. Protocol Registration PROSPERO CRD42018111197.
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Background The colonization of Extended-spectrum β-lactamase-producing Enterobacteriaceae (ESBL-PE) in bloodstream infections (BSIs) has been increased dramatically worldwide, and it was associated with worse clinical outcomes in patients with malignancy. We performed the meta-analysis to investigate the prognosis and risk factors in BSIs caused by ESBL-PE in oncological patients. Methods PubMed, EMBASE, and Cochrane Library were searched for related studies. All-cause mortality was considered as the primary outcome. Subgroup analyses, meta-regression analyses, and sensitivity analysis were used to investigate heterogeneity and reliability in results. Results 6,729 patients from 25 studies were eligible. Six studies enrolled oncological patients with BSIs caused by ESBL-PE only, while 19 studies both enrolled ESBL-PE and non-ESBL-PE infections. The results showed that BSIs caused by ESBL-PE in patients with malignancy was associated with higher mortality than non-ESBL-PE infections (RR = 2.21, 95% CI: 1.60–3.06, P < 0.001), with a significant between-study heterogeneity (I² =78.3%, P < 0.001). Subgroup analyses showed that children (RR = 2.80, 95% CI: 2.29–3.43, P < 0.001) and hematological malignancy (RR = 3.20, 95% CI: 2.54–4.03, P < 0.001) were associated with a higher mortality. Severe sepsis/ septic shock, pneumonia, and ICU admission were the most common predictors of mortality. Conclusions Our study identified that BSIs caused by ESBL-PE in patients with malignancy were associated with worse clinical outcomes compared with non-ESBL-PE infections. Furthermore, children and hematological malignancy were associated with higher mortality. Severe sepsis/ septic shock, pneumonia, and ICU admission were the most common predictors of mortality.
Article
Objectives Enterobacterales producing ESBL (ESBL-E) have been notable for their rapid expansion in community settings. This systematic review and meta-analysis aimed to summarize evidence investigating the association between ESBL-E infection and adverse clinical outcomes, defined as bacteraemia, sepsis or septic shock, and all-cause mortality in adult patients. Methods Database search was conducted in PubMed, Scopus and EMBASE. In general, studies were screened for effect estimates of ESBL-E colonization or infection on clinical outcomes with non-ESBL-producing Enterobacterales as comparator, adult populations and molecular ascertainment of ESBL gene. Meta-analysis was performed using the inverse variance heterogeneity model. Results Eighteen studies were identified, including 1399 ESBL-E and 3200 non-ESBL-E infected patients. Sixteen of these studies included only bacteraemic patients. Mortality was studied in 17 studies and ESBL-E infection was significantly associated with higher odds of mortality compared with non-ESBL-producing Enterobacterales infection (OR = 1.70, 95% CI: 1.15–2.49, I2=58.3%). However, statistical significance did not persist when adjusted estimates were pooled (aOR = 1.67, 95% CI: 0.52–5.39, I2=78.1%). Septic shock was studied in seven studies and all included only bacteraemic patients. No association between ESBL-E infection and shock was found (OR = 1.23, 95% CI: 0.75–2.02, I2=14.8%). Only one study investigated the association between ESBL-E infection and bacteraemia. Conclusions Infections by ESBL-E appear to be significantly associated with mortality but not septic shock. Available studies investigating bacteraemia and shock as an intermediate outcome of ESBL-E infections are lacking. Future studies investigating the relationship between clinical outcomes and molecular characteristics of resistant strains are further warranted, along with studies investigating this in non-bacteraemic patients.
Article
Objective: To determine the epidemiology, risk factors, and prognosis of extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli and Klebsiella pneumoniae bloodstream infections (BSIs) among hematology malignancy (HM) patients in China. Method: From January 2010 to June 2018, we retrospectively collected and analyzed the 449 HM patients with E. coli or K. pneumoniae BSIs from three leading hospitals in Hunan Province, China. Results: Two hundred four (45.4%) patients harbored ESBL-producing bacteremia. The proportion of ESBL-producing bacteremia increased significantly with the growth of the year, with a ratio of 34.47% in 2010-2014 to 54.7% in 2015-2018. Comparing with non-ESBL groups in HM patients, central venous catheter (odds ratio [OR] 1.717, p = 0.009), previous antibiotic exposure (OR 1.559, p = 0.035), and E. coli (OR 2.561, p ≤ 0.001) among ESBL groups were independent risk factors. No significant differences in 30-day mortality were tested in patients with BSI caused by ESBL-producing or non-ESBL-producing E. coli and K. pneumoniae (17.1% vs. 16.7%; p = 0. 893). The proportion of carbapenem used within 72 hours after the onset of bacteremia in two groups was high, which was routinely used as "last-resort drugs" in Gram-negative bacterial infections. Risk factors associated with 30-day mortality in HM patients with E. coli or K. pneumoniae bacteremia were myelodysplastic syndrome, incomplete remission of the disease, Multinational Association of Supportive Care in Cancer score <21, Pitt bacteremia score ≥4, Charlson comorbidity score >3, catheter insertion, use of vasopressors, and inappropriate antibiotics within 72 hours of BSI onset. Conclusions: The results of this study may provide some references for the whole process management of HM patients with BSIs.