ArticlePDF Available

Honeybees’ foraging choices for nectar and pollen revealed by DNA metabarcoding

Springer Nature
Scientific Reports
Authors:

Abstract and Figures

Honeybees are the most widespread managed pollinators of our food crops, and a crucial part of their well-being is a suitable diet. Yet, we do not know how they choose flowers to collect nectar or pollen from. Here we studied forty-three honeybee colonies in six apiaries over a summer, identifying the floral origins of honey and hive-stored pollen samples by DNA-metabarcoding. We recorded the available flowering plants and analyzed the specialized metabolites in honey. Overall, we find that honeybees use mostly the same plants for both nectar and pollen, yet per colony less than half of the plant genera are used for both nectar and pollen at a time. Across samples, on average fewer plant genera were used for pollen, but the composition was more variable among samples, suggesting higher selectivity for pollen sources. Of the available flowering plants, honeybees used only a fraction for either nectar or pollen foraging. The time of summer guided the plant choices the most, and the location impacted both the plants selected and the specialized metabolite composition in honey. Thus, honeybees are selective for both nectar and pollen, implicating a need of a wide variety of floral resources to choose an optimal diet from.
This content is subject to copyright. Terms and conditions apply.
1
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports
Honeybees’ foraging choices
for nectar and pollen revealed
by DNA metabarcoding
Matti Leponiemi
1, Dalial Freitak
1, Miguel Moreno‑Torres
2, Eva‑Maria Pferschy‑Wenzig
3,
Antoine Becker‑Scarpitta
4, Mikko Tiusanen
5,7, Eero J. Vesterinen
6 & Helena Wirta
7*
Honeybees are the most widespread managed pollinators of our food crops, and a crucial part of
their well‑being is a suitable diet. Yet, we do not know how they choose owers to collect nectar or
pollen from. Here we studied forty‑three honeybee colonies in six apiaries over a summer, identifying
the oral origins of honey and hive‑stored pollen samples by DNA‑metabarcoding. We recorded the
available owering plants and analyzed the specialized metabolites in honey. Overall, we nd that
honeybees use mostly the same plants for both nectar and pollen, yet per colony less than half of the
plant genera are used for both nectar and pollen at a time. Across samples, on average fewer plant
genera were used for pollen, but the composition was more variable among samples, suggesting
higher selectivity for pollen sources. Of the available owering plants, honeybees used only a fraction
for either nectar or pollen foraging. The time of summer guided the plant choices the most, and the
location impacted both the plants selected and the specialized metabolite composition in honey.
Thus, honeybees are selective for both nectar and pollen, implicating a need of a wide variety of oral
resources to choose an optimal diet from.
Most of the wild and cultivated owering plant species depend on animal pollinators1, 2. Honeybees are the most
abundant pollinators in the world2 and are kept by humans for their production of honey as well as for pollination
they provide. Because of their high abundancy in a variety of environments, honeybees are important pollinators
for crop plants3. At the same time the availability of proper nutrition contributes to the health of honeybees. A
variety of food sources is benecial for bee health4, yet in modern agricultural environments monocultures are
common, which might compromise proper nutrition for the bees5. Furthermore, it has been shown that bees
stressed by pesticides prefer more variable food6, which suggests that a diverse nutrition is not only important
for normal functioning, but could also promote bee health in times of stress.
Honeybees collect nectar and pollen to ll dierent nutritional needs, those of carbohydrates and those of
proteins and lipids. Nectar mostly consists of monosaccharide sugars, namely glucose and fructose. Nectar is
used to support the energetic needs of the colony, such as the costly ight of the foragers and thermoregulation of
the hive7. Honeybees commonly select plants for foraging nectar based on the sugar concentration of the nectar8
and the total sugar content within and between plant species can vary extremely, from 6.3 to 85%9. e amount of
proteins and lipids as well as the composition of dierent amino and fatty acids also vary greatly between pollen
from dierent plant species. Protein content in bee collected pollen varies from 1.5 to 48.4% and lipid content
from 1.2 to 24.6%10. e pollen preferences of the foragers are determined by the requirements of the colony;
preferred pollen sources are inuenced more by the composition of fatty and amino acids of the pollen than by
the total protein content1113. Like nectar, foraged pollen is stored in the hive, but it is mainly used in feeding the
developing brood, while adults may survive longer without pollen7.
Not only are nectar and pollen used for dierent purposes, but their foraging is also performed by dierent
sets of individuals, as individual forager bees typically only forage either nectar or pollen14, 15. Foraging nectar
and pollen are thus separate processes, also from the perspective of the plants that produce them. As nectar and
pollen dier in terms of nutrients they contain, the nectar and pollen reward plants oer may be very dierent
OPEN
1Institute of Biology, Karl-Franzen University of Graz, Universitätsplatz 2, 8010 Graz, Austria. 2Institute of
Environmental Systems Science, Karl-Franzens-Universität Graz, Merangasse 18/I, 8010 Graz, Austria. 3Institute
of Pharmaceutical Sciences, Pharmacognosy, University of Graz, Beethovenstraße 8, Graz, Austria. 4CIRAD,
UMR PVBMT, 97410 Saint Pierre, La Réunion, France. 5Department of Evolutionary Biology and Environmental
Studies, University of Zurich, Zürich, Switzerland. 6Department of Biology, University of Turku, Vesilinnantie 5,
Turku, Finland. 7Department of Agricultural Sciences, University of Helsinki, Latokartanonkaari 5, P.O. Box 27,
00014 Helsinki, Finland. *email: helena.wirta@helsinki.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
2
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
across species. Some plants, such as wind pollinated species, do not produce nectar at all, but may still act as a
source for pollen16. e plant sources may then dier in quantity and quality between the oered nectar and
pollen reward. When also considering the fact that these two resources are used for dierent purposes and are
foraged by dierent individuals, it would be expected that dierent plants are used for nectar and pollen forag-
ing. Yet most research examines the selection of one resource type at a time (e.g., pollen17 or nectar18). However,
some studies have looked how bees select plants for nectar and pollen, yet with either a very restricted number of
colonies19 or at single time point, in the spring19, 20. As the availability of plants changes during the summer due
to dierent owering times, changes in foraging are also likely to happen throughout the season19. us, there
is a lack of thorough understanding of whether honeybees select dierent plants for the two types of resources,
and how selective they are for each resource type from the available owers, as honeybees are known to utilize
only a part of the available resources21.
Previous studies on foraging choices of honeybees have been based on morphological identication of pol-
len grains in honey (melissopalynology)22. Pollen from the nectar source plant may attach to the forager bee
and later end up in the honeycomb. Today, DNA-based methods allow extraction and more precise taxonomic
identication of the plant origin of the honey, not only from pollen but from any plant tissue17. DNA can also
be readily extracted from hive-stored pollen, beebread23. Bees prepare beebread from pollen by mixing it with
glandular secretions and small amounts of nectar. Although some natural cross-contamination of these resources
is inevitable, we can use the DNA in honey to infer the source plants of nectar, while the DNA in beebread can
be used to infer the source plants of pollen17, 2225.
In addition to the nutrients in nectar and pollen, plants produce a wide variety of specialized metabolites that
also end up in plant provided resources, like nectar. Some specialized metabolites may aect pollinator behavior
and improve pollination success of the owering species26, but some of them also act as deterrents of pollinators,
creating a paradoxical situation, as plants also need to attract pollinators27. It is yet somewhat unclear why deter-
rent compounds end up in nectar, although they could potentially protect the nectar from unwanted visitors or
control microbial activity28. Overall, the role of plant specialized metabolites in honeybee foraging choices and
their eects on honeybee colonies is unresolved29.
Here we use DNA metabarcoding to identify the plant origin of both honey and beebread storages of honeybee
colonies to examine the foraging choices for these two resources simultaneously, at dierent times of the summer
and in dierent locations. By comparing the plants found to be used to the surrounding ower availability, we
determine how selective honeybees are when foraging for nectar and for pollen. We also examine what types of
specialized metabolites are found in the honey samples using ultra-high-performance liquid chromatography-
high resolution mass spectrometry (UHPLC-HRMS). Further, we examine how the foraging choices change
across the owering season for both nectar and pollen and assess how time and location aect the foraging
choices as well as the specialized metabolite composition in the honey.
Results
Summary of methods. We collected honey and beebread samples from 43 beehives, located in six apiaries
within three areas at the beginning of June, July, and August in 2021. From the time of foraging to our sampling,
we assume a similar amount of time for both sample types, as the turnover rate for beebread is about 2weeks
during the summer months30, and as it takes 3–10 days for bees to process nectar into honey31. e three areas
were located in southwestern Finland, approximately ten kilometers apart from each other, thus further apart
than bees typically y for foraging. To identify the plant taxa in the samples we used DNA metabarcoding based
on the gene internal transcribed spacer 2 (ITS2). We also mapped the natural owering plants around the three
apiary areas at the same time points as the sampling, to compare the plants available to the ones detected in the
samples. We collected additional honey samples in August to examine the specialized metabolites in the honey
with UHPLC-HRMS, using two purication methods to achieve wide coverage of compounds.
e analyses were conducted at the taxonomic level of genus using relative read abundances of genera32 and
presence-absence data to ensure the robustness of the results and interpretation, as the DNA metabarcoding
method can generate some biases in relative read abundances among taxa33. Beebread and honey composi-
tion data were graphically compared using nonmetric multidimensional scaling (NMDS), and themultivariate
homogeneity of group dispersions was tested using the PERMDISP procedure.en, we tested the change in
plant composition between the sample types using a permutational analysis of variance (PERMANOVA) with
Hellinger distances. As a complementary honey and beebread composition analysis, we identied indicator
species that characterized each sample type using the IndVal procedure. e richness of genera within a hive in
the two sample types was compared with linear mixed models and the number of shared genera with binomial
generalized linear mixed model. To assess the proportion of available owering plants used for nectar and pollen
foraging, we compared owering plants mapped in the surroundings to the ones detected in the samples using
euler-diagrams. To nd the factors aecting the foraging choices we again applied NMDS’s and used redundancy
analysis (RDA) to assess the inuential variables, with Hellinger-transformed values. To nd whether apiary area
also has an eect on the composition of specialized metabolites in honey, we used multivariate data analysis.
e most abundant specialized metabolites discriminating the three apiary areas as well as the most abundant
ones commonly occurring in all three apiary areas were annotated by comparing their mass spectrometry (MS)
data with literature and databases.
Taxa detected in honey and beebread. Aer bioinformatic ltering, there were 2,592,723 sequencing
reads from the honey samples and 1,724,302 from the beebread samples. Aer ltering out samples with fewer
than 5,000 reads (n = 5), we had 97 honey samples for analyses, with on average 26,656 (SD ± 10,877) reads per
sample. Of these 39 were collected in June, 30 in July and 28 in August. For beebread we had 87 samples aer the
Content courtesy of Springer Nature, terms of use apply. Rights reserved
3
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
ltering with on average 19,769 (SD ± 7,249) reads per sample. 36, 28 and 23 of these were collected in June, July
and August, respectively. 95.1% of honey and 91.1% of beebread reads were assigned to a genus. As the propor-
tions assigned to species were far lower (14.9% for honey and 21.8% for beebread), in order to use most of the
data available, we use the genus level assignments for all analyses.
e total number of dierent genera detected in either honey or beebread was 67 (57 in honey, 61 in bee-
bread). In honey samples we found 33, 33 and 42 genera, while in beebread samples we found 39, 20 and 29
genera in June, July and August, respectively (Supplementary TableS1). Over the whole season, almost half of
the sequencing reads in honey came from two genera, 32.8% originating from Brassica and 17.4% from Rubus.
In beebread, most reads also originated from two genera, 27.1% from Brassica and 22.1% from Sorbus. e rela-
tive abundances of genera in the samples at each time point can be found in supplementary tableS1. In terms
of plant diversity specic to the apiary areas, the number of genera found in honey were 17, 25 and 29 in the
apiary area A-B in June, July and August, respectively. For apiary area C–D there were 23, 15 and 20 genera, and
for E–F 26, 23 and 29 genera, in June, July and August. As for beebread, the number of genera in the area A–B
was 24, 15 and 21, for the area C–D 28, 10 and 15, and for the area E–F 28, 10 and 20 genera, in June, July and
August, respectively.
Shared and distinct plant genera found in honey and beebread. Out of the 67 total genera, 51
were detected in both honey and beebread (Supplementary TableS1). Six genera were found only in honey
and ten only in beebread. Regardless of the partial overlap in plant genera composition for both honey and
beebread, as shown by the ordination (Fig.1), the plant communities in honey and beebread samples dier
signicantly in their dispersion (PERMDISP, F = 12.575, p < 0.001, honey = 0.726, beebread = 0.811). We found
a signicant dierence in plant genera composition between honey and beebread (PERMANOVA, F = 24.961,
p = 0.001, R2 = 0.070), although this result is at least partly due to the dierence in group dispersions shown by
the multivariate homogeneity of group dispersion analysis (Supplementary Fig.S1).
To assess how the plant choices change through time in colonies, we analyzed the number of genera in samples
of honey and beebread from individual hives. Honey samples had a larger number of genera in August than at
earlier time points (Fig.2A, Supplementary TableS2) while beebread samples had the lowest number of genera
in July in comparison to the other time points (Fig.2B, Supplementary TableS3). Overall, the number of genera
was signicantly higher in honey samples (mean 10.16) than beebread samples (mean 7.87) (Supplementary
tableS4). To assess the proportion of plant genera shared between the honey and beebread communities in each
hive, we analyzed paired samples of honey and beebread, collected from individual hives at the same time (June
NMDS Stress 0.147
−0.4
−0.2
0.0
0.2
0.4
0.6
−0.40.0 0.
40.8
NMDS1
NMDS2
Sample type
Honey
Beebread
Figure1. Plant genera composition of honey (red, n = 97) and beebread (blue, n = 87) samples collected from 43
hives in 6 apiaries in Finland in 2021. Figure showing non-metric multidimensional scaling (NMDS) based on
Hellinger dissimilarity index. Ellipses show 75% condence limits for each sample type.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
4
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
n = 32, July n = 28, August n = 21). e proportion in hives ranged from 0.10 to 0.71 but was on average similar
throughout the summer, ranging from 0.35 to 0.43 between time points (Fig.2C). ere was no signicant dif-
ference in the proportion of shared genera among the time points (GLMM, p = 0.12, Supplementary TableS5).
Based on the indicative species analyses, to identify which plant genera are mostly selected either for nectar
or pollen foraging, twelve genera are signicantly associated with honey samples, compared to eight genera for
beebread (Table1, for results based on presence-absence data see Supplementary TableS6). e genera most
strongly associated with honey were Rubus and Myosotis, whereas for beebread they were x-Amelasorbus (a
hybrid genus) and Pisum.
Selectivity of oral choices from the available owers. During the surveys of owering plants in the
28 plots presenting the six dierent habitat types surrounding the apiary areas, we found 99 species, represent-
ing 73 genera and 27 families (Supplementary TableS7). 39 genera were in ower in June, 43 in July and 50 in
August. e agricultural elds found owering close to the hives were Linum usitatissimum, Brassica sp. and
Solanum tuberosum, all in July. Out of the 73 genera found, less than half were found in the honey (32) or bee-
bread (30) samples. e proportions of owering plant genera that were also found in honey was 40.0%, 32.6%
and 38.0% in June, July and August (Fig.3). In beebread the proportion of owering plants was 40.0%, 23.3%
and 32.0% in June, July and August. Out of the genera found in honey and beebread, 33 genera were not found
during the owering plant survey. e proportion of genera not found owering in the natural habitat types but
found in honey samples in June, July, and August, were 51.5%, 57.6% and 54.8% and in beebread samples 59%,
50% and 44.8%. On the other hand, most of the plants found owering in the natural habitats were not found in
either honey or beebread, being 52.5%, 62.8% and 60.0% in June, July and August, respectively (Fig.3).
Impact of the time of the season and location on the oral choices. e selection of owers by
honeybees strongly varies between sample type and change over time (Table2). In the variation partitioning,
sample type and time explained 30.7% of the total variation, while the variables associated with the experimental
design and spatial eects (i.e., site, apiary and hive) accounted for 1.2% of the total variation, and 62.5% are not
explained by the model (RDA model F = 25.31, df = 5, p-value < = 0.001, adj R2 = 45.7, Table2, Fig.4).
0
5
10
15
20
Month
Number of genera
a) Honey
June July August
a
a
b
0
5
10
15
20
Month
Number of genera
b) Beebread
June July August
a
b
a
0.0
0.2
0.4
0.6
0.8
1.0
Month
Proportion of shared genera
c) Shared
June July August
Figure2. e number of genera in samples collected from beehives in Finland in 2021 at each time point from
6 apiaries, showing genera in honey (a, June n = 39, July n = 30, August n = 28) and beebread (b, June n = 36,
July n = 28, August n = 23), and the proportion of shared genera for paired samples of honey and beebread
from individual hives (c, June n = 32, July n = 28, August n = 21). Signicantly dierent groups in pairwise
comparisons in (a) and (b) are denoted with letters.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
5
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
Composition of specialized metabolites in honey. e most abundant specialized metabolites occur-
ring commonly across all apiary areas in the honey samples collected in August were annotated based on the MS
data (Supplementary Text S1, TableS10). Multiple isomeric monoterpene glycosides and tricoumaroyl spermi-
dines, carboxylic and dicarboxylic acids, the plant hormone abscisic acid and the vitamin pantothenic acid were
among the major metabolites found in all three apiary areas (Supplementary TableS9, Figs.S6 and S7).
e impact of the apiary area on the specialized metabolite composition in honey was assessed by multivari-
ate data analysis (Supplementary Text S1, Figs.S4, S5, S8 and S9), showing not only the occurrence but also the
abundance of specic metabolites to dier between the apiary areas. e most abundant discriminant metabolites
Table 1. Statistically supported indicative plant genera associated with either honey (n = 97) and beebread
(n = 87) samples that were collected from 43 hives in 6 apiaries in Finland in 2021, based on relative read
abundances, with component values.
Honey A (specicity) B (delity) stat p value
Rubus 0.936 0.845 0.889 0.001
Myosotis 0.971 0.474 0.678 0.001
Salix 0.647 0.505 0.572 0.016
Vicia 0.628 0.485 0.551 0.004
Taraxacum 0.888 0.268 0.488 0.001
Prunus 0.754 0.309 0.483 0.002
Malus 0.654 0.289 0.434 0.031
Chamaenerion 0.796 0.165 0.362 0.014
Rosa 1.000 0.124 0.352 0.001
Medicago 0.925 0.082 0.276 0.016
Populus 1.000 0.062 0.249 0.028
Comarum 1.000 0.062 0.249 0.031
Beebread A (specicity) B (delity) stat p value
x-Amelasorbus 0.757 0.379 0.536 0.001
Pisum 0.724 0.391 0.532 0.026
Calluna 0.856 0.322 0.525 0.001
Rhododendron 0.690 0.253 0.418 0.024
Syringa 0.808 0.161 0.361 0.009
Cirsium 0.771 0.161 0.352 0.035
Crataegus 1.000 0.092 0.303 0.002
Aronia 1.000 0.069 0.263 0.010
a) June b) July c) August
Honey
5Beebread
11
Flowering
21
12
3
3
13
Honey
13
Beebread
4
Flowering
27
6
6
2
8
Honey
13 Beebread
3
Flowering
30
10
4
1
15
Figure3. Number of shared and unique plant genera found in samples of honey (June n = 39, July n = 30,
August n = 28) and beebread (June n = 36, July n = 28, August n = 23), collected in 43 beehives in six apiaries in
Finland in 2021, and the number of owering plants surrounding the hives. Honey shown in pink, beebread in
green and owering plants in blue at dierent times; (a) June, (b) July and (c) August.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
6
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
were deduced from OPLS-DA models using the apiary areas as classiers, and annotated (TableS11, S12). eir
distribution among the three apiary areas was found to vary strongly (Supplementary Figs.S8 and S9). Using
NMDS the specialized metabolites from both datasets seem to cluster in similar fashion, while the plant genera
in honey samples from the same time points overlap more in apiary sites CD and EF (Fig.5).
Discussion
Nectar and pollen constitute the whole diet of honeybees, yet the nutritional contents, as well as quantities of
nectar and pollen dier greatly among plant species. us, the choices honeybees make, when selecting owers
to collect nectar or pollen from, are very important for their diet. Here we found that honeybees largely choose
the same plants for both nectar and pollen, when considering all the hives across the whole summer. Yet, when
focusing at individual colonies at a time point the plants chosen for nectar or pollen dier substantially. We also
show that honeybees use only a fraction of the available owers in the surrounding natural habitats, for either
nectar or pollen foraging. In our study the time of the summer was the largest determinant on which plants were
foraged on, but the foraged resource type and location also played a signicant role. A large variety of specialized
Table 2. Results from the partial canonical model including spatial variables to control pseudoreplication
linked to experimental design (see statistical methods). Variation partitioning quanties the proportion of
variation explained by sample type, sampling time and variables (site, apriary, hive) on the plant genera found
in samples of honey (n = 97) and beebread (n = 87), collected from 43 hives in 6 apiaries in Finland in 2021.
Signicance values are [bold].
Variables Df Variance Fp-value
sample_type 1 0.043 25.535 0.001
time 2 0.145 42.636 0.001
sample_type:time 2 0.052 15.204 0.001
Residual 135 0.229
Fractions Df Adj. R2
X1 = Sample_type & Time 3 0.307
X2 = Area, apiary & hive 42 0.012
X1 + X2 45 0.375
Residuals 0.625
NMDS Stress 0.147
−0.4
−0.2
0.0
0.2
0.4
0.6
−0.4 0.00.4 0.8
NMDS1
NMDS2
Sample − time
Beebread June
Beebread July
Beebread August
Honey June
Honey July
Honey August
Figure4. Plant genera composition of beebread (triangles, dashed ellipses, June n = 36, July n = 28, August
n = 23) and honey (circles, solid ellipses, June n = 39, July n = 30, August n = 28) at dierent time points in
samples collected from 43 hives in 6 apiaries in Finland in 2021. Figure showing non-metric multidimensional
scaling (NMDS) based on Hellinger dissimilarity index, ellipses showing 75% condence limits.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
7
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
metabolites was found in the honey samples, showing dierences among the apiary areas. Below we discuss all
these ndings in turn.
Honeybees are more selective for pollen. We found that honeybee colonies use dierent plants for
nectar and for pollen, as on average less than half of the plant genera found in a hive at a time were found in both
honey and beebread samples. ese dierences are not surprising, as nectar and pollen are collected for dier-
ent needs, by dierent specialized foragers, and nectar and pollen nutritional qualities as well as quantities vary
widely among plants34. e average number of genera in honey samples in the colonies was higher than in bee-
bread. However, the composition of genera in beebread samples varied signicantly more. erefore, while fewer
genera were used for pollen foraging, the genera varied more between hives and time points, making the overall
number of plant genera used for pollen higher. is result corresponds to previous studies nding that honey-
bees forage on fewer species for nectar than for pollen19, 20, 35. is together with our results suggests that same
plants are more consistently used for nectar, while the foraging choices of pollen change more frequently. is
could mean that pollen foraging sources are more variable to maintain the ow of important nutrients required
by the colony, as honeybee colonies can remedy deciencies in essential fatty and amino acids by preferring pol-
len that complement the deciencies11, 12. We further detected a number of genera being strongly associated with
one resource type, suggesting the properties of nectar or pollen of these plants to be favorable19, 20, 35.
Although about half of the genera detected in colonies at a time was dierent for nectar and pollen, we found
that as a whole largely the same plant genera were utilized for both nectar and pollen foraging. is36 indicates
that many plant genera are suitable for both pollen an nectar foraging, but the resource itself is important, as we
see clear dierences in the choices for the two resource types.
Limited use of the available oral resources. roughout the summer fewer than half of the available
owering natural plants were found to have been foraged on for either nectar or pollen. Previously, DNA based
comparisons of what honeybees forage on from the surrounding oral resources have similarly found that only
a fraction of the available owers is used by honeybees21, 37. For example, a study in a botanic garden in Wales
found that honeybees used only 11% of the available owering taxa, preferring native or near-native plants21. In
our study we similarly found that horticultural plants were not majorly used by bees. Only two genera had rela-
tive abundance greater than 1% at any point in either honey or beebread, Hydrangea (2.2%) and Phacelia (2.3%),
which is sometimes planted as a resource for honeybees.
On the other hand, we found that honeybees had used many genera that we had not detected in our surveys
of owering plants in natural habitats. Eight of such genera were ornamental or other garden plants, such as
Rosa and Paeonia, and six were cultivated plants, such as Coriandrum (coriander) and Raphanus (radish), show-
ing that honeybees forage also in gardens and on elds in our study area. is is expected, as also in previous
studies in the UK honeybees have been shown to use garden plants extensively38, 39. Ten genera found in honey
and beebread samples, but not recorded during our survey of owering understory plants, were typical Finnish
trees. Yet, a few native Finnish owering genera were found commonly in the honey samples, such as Persicaria
(knotweeds), Fallopia (e.g., black bindweed) and Convallaria (lily-of-the-valley), although we had not recorded
them in the survey. is means our owering plant surveys were not thorough enough to give a full picture of
NMDS Stress 0.125
−0.2
0.0
0.2
0.4
0.6
−0.2 0.00.2 0.4
NMDS1
NMDS2
AB
CD
EF
a) Metabolite dataset 1
NMDS Stress 0.149
−0.2
0.0
0.2
0.4
0.6
−0.4 −0.2 0.00.2 0.4
NMDS1
NMDS2
AB
CD
EF
b) Metabolite dataset 2
NMDS Stress 0.105
−0.3
0.0
0.3
0.6
−0.75−0.50 −0.250.000.250.50
NMDS1
NMDS2
AB
CD
EF
c) Plant genera
Figure5. Non-metric multidimensional scaling (NMDS) plots for specialized metabolites in honey with two
separation techniques producing dataset 1 (a, n = 27), dataset 2 (b, n = 27) and plant genera composition in
honey samples at the same time point (c, n = 30), grouped by apiary sites. Ellipses show 75% condence limits
for each site.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
8
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
the available oral resources, even though we assessed all the habitat types in the area. Yet, honeybees only used
a fraction of the owers that we did nd owering, indicating honeybees are selective in choosing plants to for-
age on, in support of other studies showing honeybees to be selective21, 37.
Choices for nectar and pollen change according to time of the summer dierently. e time of
the summer was the strongest determining factor of plant genera found in honey and beebread samples. is is
an expected result considering the dierent owering times of plants, changing the availability during the year,
and in line with previous research nding honeybees’ ower usage to clearly follow plant phenologies38, 40. Loca-
tion also played a role in the usage of plants, as the spatial eects accounted for almost one fourth of the varia-
tion. is was anticipated since the owering plant pool within reach of a colony would be dened by the site.
e diversity of plants used for nectar and pollen foraging, detected in honey and beebread samples, had
dierent dynamics through the summer. e number of genera in honey was highest in August, which was
also when most owering plants were detected in the environment, but aer the main nectar ow in Finland41.
However, in beebread samples we found fewer genera in July, when the rapeseed (Brassica) owers. A similar
eect in reduced pollen richness coinciding with the mass owering of rapeseed has been seen in other studies
as well42. is has been explained by optimal foraging theory, predicting that when a preferred food source is
abundantly available, foragers should utilize that, and when the preferred resource becomes limited, the number
of utilized species would increase40. is is supported by our observations, as in July rapeseed also dominated
the read abundance in beebread, and the diversity of genera in beebread was at its lowest. As rapeseed appears to
be a good source of nutrition for honeybees43 a preference could be expected, yet such preference has oen not
been shown18, 35. Interestingly in honey samples the overall number of genera did not dip in July. It was slightly
lower in apiary area E–F, and clearly lower in area C-D, which is surrounded by the lowest amount of agricultural
landscape. ese dierences could result from the dierent landscape imposing dierent resource availability
between the areas, shaping the breadth of foraged plants40. Nevertheless, the result shows the availability of an
abundant source aects the choices of pollen foragers dierently from nectar foragers.
e lower number of genera in beebread in July may appear alarming, because the diversity of the pollen
diet has been linked to honeybee health44. However, lower diversity of pollen does not always cause problems,
as the nutritional quality of pollen is more important4. For example, the mass owering of maize is detrimental
to honeybee health, because maize pollen is of low quality4, but a pollen diet of similar low diversity does not
cause detrimental health eects when composed of better-quality sources4. Diverse sources of pollen during the
mass owering are thus especially important in areas where the hives are close to crops that produce pollen with
low nutritional content, and at times of resource limitations40.
Natural DNA contaminations between honey and beebread in the hive. When honeybees for-
age, pollen from the ower attaches to them, and some of it may also enter the combs as honeybees are process-
ing nectar into honey. Also, honeybees add small amounts of nectar and glandular secretions to pollen as they
prepare it as beebread7. us, the beebread samples could contain traces of DNA from the plants used as nectar
sources and vice versa. Such possible natural contaminations will make the plant composition of the two sample
types more similar, making dierences detected more conservative. We nevertheless nd dierences in plant
genera in honey and beebread samples, both based on relative read abundances and occurrences, and suspect
that due to the mentioned biases the actual foraging choice dierences are stronger.
Specialized metabolite composition in honey is inuenced by apiary location. Like the plant
genus composition, the specialized metabolite proles of honey samples were inuenced by location, suggesting
that the availability of the dierent plant taxa in each apiary area contributed to the observed dierences. It was
consistent with the perceived similarity of the surrounding landscape, areas A–B and E–F having a similar land
use composition. Interestingly, the specialized metabolites appear to cluster more distinctly when compared
with the plant genera composition, although it could be explained by the slightly dierent sampling methods.
Many of the annotated compounds have previously been detected in honey samples. For example, numerous
hydroxcinnamoylamines, known pollen constituents with varying levels and substitution patterns between plant
species4547, were annotated. Some of the detected isomers with obvious oral origins consistently occurred in
samples from all three areas (e.g. tricoumaroylspermidine isomers are known to occur in rapeseed beebread48),
while others obviously were derived from more specically occurring plant taxa. Commonly occurring were also
e.g., pantothenic acid, a vitamin, and abscisic acid, a plant hormone possessing diverse and important regulatory
roles in plants. Interestingly, abscisic acid seems to have a benecial impact on bee health. Abscisic acid supple-
mentation has been shown to enhance the immune response in honeybees and to contribute to colony tness49,
and it was able to enhance cold stress tolerance in in-vitro reared honeybee larvae50, thus it could have guided
the oral choices.
Two carboxylic acids commonly occurring across apiary areas are traced back to royal jelly, the larval feed of
the honeybee, which is known to contain decene- and decanedioic acids identied herein51, 52. ese compounds
have been previously detected in various honey accessions, and their occurrence in royal jelly suggests that they
originate from the bee itself, and not be playing a role in the foraging choices.
Among the metabolites that discriminate among the areas, the avonoids chrysin, tectochrysin and pin-
obanksin have frequently been detected in honey53, 54. Since they are known as typical propolis constituents,
their abundance in honey may rather depend on its propolis content than on its oral origin55. Vomifoliol has
previously been detected as major constituent in honey produced from Salix nectar56 and as minor constituent in
Trifolium pratense honey57. In line, Salix and Trifolium were among the relatively most abundantly found genera
Content courtesy of Springer Nature, terms of use apply. Rights reserved
9
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
in the DNA of these honey samples. Salicin has only occasionally been detected in honey, but is also known as
constituent of Salix species58.
Conclusions
We found honeybees to be clearly selective for owers overall, using only a fraction of the plants available. e
mass-owering of rapeseed seemed to alter pollen foraging more than nectar. e time of the summer and the
surroundings of the hives determine ower availability, and although many plant species could provide both
suitable nectar and pollen, we found each colony to select largely dierent plants for nectar and for pollen.
ese together tell that honeybees base their foraging choices on multiple factors, and that they actively choose
the plants they forage on. Further research on honeybee nectar and pollen requirements and foraging choices
simultaneously could aid bee conservation eorts. As we know that a diversity of plants is important to fulll
the nutrient needs of honeybees, we need to assure a wide variety of plants are available for them throughout
the summer, so that they can select the right plants to ll their resource needs.
Materials and methods
Description of habitat and sampling. To study the foraging choices of honeybees for nectar and pollen,
we studied 43 honeybee colonies and the surrounding owering plants in Southern Finland in 2021. e hives
were established in 2020 and maintained by two experienced beekeepers using conventional Finnish beekeeping
practices41. e hives were located in six apiaries, with two apiaries less than 2 km apart and 10–15 km between
each pair of apiaries (Fig.6). In each apiary there were two to eight hives. e hives were also used in an experi-
ment on trans-generational immune priming59. e priming treatment had no eect on foraging behavior (Sup-
plementary Fig.S2) and is thus not further considered in this study.
As honeybees mainly forage within a few kilometers of their hive60 and rarely go beyond ten kilometers61, we
consider each pair of apiaries to partly share the oral resources, while between the pairs of apiaries the studied
honeybees would mostly be too far from each other to use the same ower resources. e apiary area consists of
a mosaic of cultivated elds and managed forests, with dierences in the ratios of these between the vicinity of
each apiary, as determined by Corine land cover database (version 20b2, 2018, European 100 m raster database62;
Supplementary Fig.S3).
We mapped the owering plants and from the bee hives we collected beebread and honey samples at three
time points during the summer 2021. e rst sampling from the hives and ower counts were done in June
(8.–13.6.), second in July (9.–14.7.), and third in August (10.–13.8.2021). For the sampling, which was only
from the hives, we had the permission of the owners of the hives and thus it complied with all national rules
and legislation in Finland, as no other permits are required. e owering plants were assessed within 3km dis-
tance of the hives, in sites selected by stratied (random) sampling with arbitrary allocation, in dierent habitat
types indicated by Corine land cover database. Selected habitat types to map were mixed forests, conifer forests
and broadleaf forests, roadsides, riversides, and natural pastures. Five of the habitat types were found close to
each pair of apiaries, while broad-leaf forest was close to only two (apiaries A-B and C-D) and in the third area
Figure6. e study area location in Finland (rectangle on map not to scale) with relative locations of the
apiaries with hive numbers each month (June, July and August of 2021).
Content courtesy of Springer Nature, terms of use apply. Rights reserved
10
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
(apiaries E–F) the only riverside vegetation was present. In total owers were identied and counted in 24 sites,
as six types of vegetation close to each pair of apiaries and then a site next to each apiary. In each site an area of
200 m2 was established (14.5 m × 14.5 m or 100 m × 2 m). Additionally, we assessed the owering plants close
to each apiary, along the edge of a eld if the apiary was placed next to a eld, or along a road if the apiary was
located in forest. For these we established areas of 100 m × 2 m (200 m2). All owering plants within the area
were identied based on literature on site63.
To assess the plants used for nectar foraging we collected a spoonful (approximately 15 g) of newly covered
honey from three frames from each hive, to cover the diversity of honey at a time. e honey was collected by a
DNA-clean spoon into one DNA-free 50 ml tube (Sarstedt AG & Co. KG, Germany), pooling the sample from
the three frames. DNA-free spoons were prepared by washing with detergent and incubation for 5h in + 200°C.
During the sampling in August another honey sample was collected to assess plant metabolites in honey. For
this the pooled sample was collected the same way except sampling the spoonful from one newly covered honey
frame and two frames with older honey, to get a sample representing the latter part of season more comprehen-
sively. To identify which owering species honeybees collect pollen from, in comparison to nectar, we collected
a beebread sample from each hive at the same time points. Twenty cells of beebread were sampled from three
frames, resulting in pooled sample of sixty beebread cells, to cover the diversity of stored pollen in a hive at a
time. e beebread from a cell was sampled by pushing a plastic straw to the bottom of a cell and twisting, thus
including all or most of the beebread in a cell. e samples were frozen immediately over dry ice in the eld. All
the samples were stored frozen in − 20°C before further processing.
Sample numbers. At the beginning of the sampling there were 43 hives from which we sampled, but unfor-
tunately nearly one third of the colonies were le without a queen (queen had died or swarmed) before the
second sampling, so 30 hives remained in July and 29 in August. In total we collected 99 honey samples and 90
beebread samples, as we were not able to get a proper sample. At the rst sampling in June, eleven of the hives
had no covered honey yet, so instead we sampled partially processed nectar as the honey sample.
Sample preprocessing for DNA extraction. Before extracting the DNA, the samples were preproc-
essed. For honey, the sample collected from three frames was mixed and 10g of honey was diluted to 30ml of
DNA clean water in a 50ml tube. e honey was let to dissolve into the water for 30min in 60°. e samples
were then centrifuged at 8000G for 60min, aer which most of the supernatant was discarded and the pellet
was transferred to a 2ml tube. e 2 ml tube was further centrifuged at 11,000 G for 5min and the remaining
supernatant was removed.
For beebread, the beebread was rst extracted from the straw and weighed with a precision scale. e sample
was then diluted in double distilled water with a 2:1 water-beebread weight ratio and mixed with magnetic stirrer
for 10min to produce a homogenized suspension. 100µl of beebread suspension per sample was collected into a
2ml microcentrifuge tube. e 2ml tube was centrifuged at 16,873 G for 3 min and the supernatant was removed.
All the preprocessed samples were stored in freezer until DNA extraction.
DNA extraction, amplications, and sequencing. QIAamp DNeasy plant mini kit (Qiagen, Neth-
erlands) was used to extract DNA with adapted manufacturer protocols. For the honey samples, the pellet was
resuspended in 400 µl of buer AP1, and then 4 µl RNase, 4 µl proteinase K (20mg/ml) and one 3 mm tungsten
carbide bead was added to each sample tube. e sample was disrupted 2 × 2 min 30 Hz (Mixer Mill MM 400,
Retsch, Germany). DNA extraction then followed the protocol with the exception of skipping the QIAshredder
column step and nally the DNA was eluted to 50 μl of elution buer.
For beebread samples, the pellet was resuspended in 400 µl of buer AP1 with two 5mm metal beads and
disrupted 2 × 2 min 30 Hz (TissueLyser II, Qiagen, Netherlands). Incubation with buer AP1 and 4 µl RNase A
was done in 65°C for 30 min, inverting tubes twice during incubation. Manufacturer protocol was thereaer
followed, except 100 µl nal elution volume was used with a single centrifugation step. With the extraction of
each sample type, 2–3 DNA extract controls were included. We only used DNA-free tubes, pipet tips and PCR
plates as well as DNA-free water.
e initial amplications were done with a total volume of 10 μl, each containing 5 μl MyTaq Red Mix (Bio-
line, London, UK), 1.3 μl DNA-free water, 0.3 μM of each primer and 3 μl of DNA extract. To amplify a partial
ITS2 region from both honey and beebread samples, we used the plant-targeted primers with a tag to attach the
index in the second PCR, tagF_ITS2-F and tagR_ITS2-R (tcgtcggcagcgtcagatgtgtataagagacagATG CGA TAC TTG
GTG TGA AT and gtctcgtgggctcggagatgtgtataagagacagTCC TCC GCT TAT TGA TAT GC, respectively, tag shown
in lower case and annealing primer in upper case64, 65). PCR cycling conditions were as follows. e initial dena-
turation was for 3 min at 95°C, followed by 28 cycles of 30 s 95°C (denaturation), 30 s 55°C (annealing), 30 s
72°C (extension), and ending with nal extension for 7 min at 72°C. To minimize initial bias of amplication,
each reaction was carried out as two replicates. All the amplicons were checked on agarose gel and imaged to
check the reaction had worked and the DNA and PCR controls were clean. e PCR replicates were combined
before library-PCR as 1.3 μl of each PCR product replicate. Illuminaspecic adapters and unique dualindex
combinations for each sample was used 66. e library PCR had a total volume of 10 μl, each containing 5 μl
MyTaq Red Mix (Bioline, London, UK), 0.3 μM of reverse primer, 0.3 μM of forward primer and 2.6 μl of the
locus-specic combined 1st PCR product. PCR cycling conditions were as follows, the same for all gene regions
for the library PCR. Starting with 4 min 95°C to denature, followed by 15 cycles of 20 s 98°C, 15 s 60°C and 30
s 72°C, and ending with 3 min 72°C. DNA libraries were pooled per gene region and per 96 samples, and con-
centrated using a SPRI bead protocol. e concentrated pooled sample was loaded on 1% agarose gel (Agarose
tablets + TAE) and run with 90 V for 120 min. e target bands were cut on UV light and the pooled sample
Content courtesy of Springer Nature, terms of use apply. Rights reserved
11
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
was cleaned from gel with the PCR and Gel CleanUp Kit (Macherey–Nagel), diluted in 2 × 20 μl of the elution
buer provided in the kit. e DNA concentration of the cleaned pools were measured with Qubit 2.0 (dsHS
DNA Kit, ermoFisher Scientic).
e pools of 96 samples were combined in equimolar ratios and sequenced in two MiSeq sequencing runs
(including other libraries also) with v3 chemistry with 600 cycles and 2 × 300 bp paired-end read length.
Bioinformatics. e bioinformatic processing (following67, 68) rstly involved truncating the reads to 240
bp. is was done to cut o lower quality ends before merging the paired ends for each gene region using
VSEARCH69 with a maximum of 80 dierences allowed for overlap and a minimum assembly length of 150 bp.
e merged reads were quality controlled by fastq_maxee, with maxee = 3. Primers were removed using cutadapt
with a maximum of 0.2 error rate for primers, and reads were kept with minimum length of 100 bp aer primer
removal. e merged and quality-controlled reads were only retained if they contained the expected primers at
each end. e reads were then dereplicated into uniques and singletons were removed. e reads were denoised
to zero-radius operational taxonomic units (ZOTU) using with unoise3 with USEARCH70. A ZOTU table was
built and the taxonomic assignation of ZOTUs was done by comparison against an ITS2 reference database from
PLANTiTS71, accessed 21.3.2022 with VSEARCH. We consider here the taxonomic assignments as they resulted
from the analyses without correcting based on species distributions, although some of the genus assignments
might not be correct, e.g., x-Amelasorbus is a hybrid genus, and most likely the sequences assigned to it would
originate from Sorbus in Finland.
To remove possible misassigned reads and false positives, due to contamination, we further ltered the reads
in ZOTUs (following e.g.72, 73). As small numbers of reads were found in all controls, reads were removed for each
ZOTU, from each sample if they were less reads in the sample than the maximum number of reads from the DNA
extraction or PCR negative controls for the ZOTU. Aer taxonomic assignation, taxa with less than 0.05% of the
total read number of that sample were removed, as well as taxa with less than 10 reads were removed. Samples
with fewer than 5000 reads were removed to omit samples with shallow sequencing.
Statistical methods. We calculated the relative read abundances (RRA) of each plant genus per sample 32,
and RRA data was used for the analyses. We ran the analyses also using presence-absence (PA) data. Results from
PA-analyses are in general agreement with the RRA-results and are available in the supplementary information.
Statistical methods were implemented and gures generated in R version 4.2.2 74, except for the specialized
metabolite analyses (see below). P values of < 0.05 were considered statistically signicant.
To identify the dierence in the selection of oral resources by bees to produce honey or beebread, we rst
tested the multivariate homogeneity of the dispersion of groups between honey and beebread (PERMDISP, R
function “betadisper” from the vegan package75, using the Hellinger-transformed data at genus-level). Second, we
quantify the dierence in plant genus composition between beebread and honey using a permutational analysis
of variance (PERMANOVA, with the “adonis2” function of the vegan package75). As adonis2 does not allow
random eects, the terms site, apiary, and hive were included in the model formula as xed eects to account
for pseudoreplication following the structure:
To describe how honey and beebread samples dier and group into distinct clusters based on their composi-
tion of plant genera, we applied nonmetric multidimensional scaling (NMDS, with function “metaMDS” from
package vegan75). NMDS was further used to illustrate the temporal eects on the samples as well as comparison
with metabolite datasets, for which pooled honey sample data from July and August were used. NMDS analyses
were performed with Hellinger transformed data.
We analyzed the number of genera in each sample type (honey or beebread) with linear models, using time
point as explanatory variable and hive as random variable, with function “lmer” from package lme476. Pairwise
comparisons for time points were made using emmeans-package77 with Tukey p-value adjustment. To analyze
the proportion of shared and non-shared genera within the paired honey-beebread comparisons a binomial
generalized linear model with logit-link function was used (using “glmer” function from package lme476), again
using time point as explanatory variable and hive as random variable. Model assumptions were checked visually
and with the R package DHARMa78. To identify which plant genera are the most associated with the honey and
beebread samples, we used the Indicator Species Analysis (IndVal, with function “multipatt” from the package
indicspecies79, using 999 permutations).
To test the contribution of variables aecting oral choices, we used partial redundancy analysis (RDA) using
Hellinger distances. e model follows the structure:
As with the PERMANOVA model, the RDA controls the design variables experimentally to account for
pseudo-replication. e model was also tested with the sequencing read depth, which appeared to decrease the
observed conditional variation by approximately 5% (Supplementary TableS8). Constrained ordination was
tested by ANOVA-type permutation test in the vegan package. e variation associated with temporal, spatial
and methodological variables were quantied by variation partitioning with the function “varpart” from the
vegan package75.
Extraction of plant specialized metabolites. Specialized metabolites were puried from honey sam-
ples from 27 hives. First, ve grams of honey was measured into 50 ml centrifuge tubes in three replicates. Two
adonis
(
Hellinger_aboundance
site
/
apiary
/
hive
+
sample_type
)
.
RDA
(Hellinger_abundance sample type time +conditional
site apiary hive
.
Content courtesy of Springer Nature, terms of use apply. Rights reserved
12
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
dierent purication methods were employed to remove sugars and to recover as wide a variety of specialized
metabolites as possible. Purication method 1 followed a method mainly directed on the enrichment of avo-
noids, i.e., medium-polar metabolites80, with slight modications. 15ml of water, adjusted to pH 2 with HCl,
was mixed with the honey and stirred with magnetic stirrer for 15 min until completely uid. Samples were
then centrifuged 3220 G, 25°C, 1 min to remove particles. e supernatant was loaded on an Oasis 500 mg
HLB cartridge (Waters, USA), preconditioned with 10 ml methanol, followed by 10 ml water (pH 2), allowed
to equilibrate for 10 min, and washed with 10 ml pure water. Analytes were eluted with 5 ml of methanol into a
15 ml centrifuge tube. e eluent was removed under a stream of nitrogen. Prior to measurement, samples were
reconstituted in 1ml of 0.1% formic acid/acetonitrile (70/30) containing 0.025 mg/ml indomethacin as internal
standard (ISTD) and ltered through 0.45 µm PTFE lters.
Since purication method 1 would lead to the loss of alkaloids and very polar compounds during the washing
step, samples were puried with method 2 which is based on Quick Easy Cheap Eective Rugged Safe (QuECh-
ERS) protocol. is has been widely applied for enrichment of various trace compounds, among them for the
analysis of alkaloids in honey81. First, 10 ml of water and 10 ml of acetonitrile was mixed in the 5 g honey sample
and thoroughly shaken until mixed. Subsequently 8.2 g of MgSO4.7H2O and 1 g of NaCl were added. e mixture
was shaken vigorously for 1 min and then centrifuged for 5 min at 2465 G, 25°C, 5 min. e upper layer was
ltered through 0.45µm cellulose acetate lter, and 1ml was dried under a stream of nitrogen and redissolved
in 100 µl of MeOH/H2O 1/1 containing 0.01 mg/ml benzanilide as ISTD.
Analyses were performed on a Dionex Ultimate 3000 UHPLC hyphenated with a ermo QExactive Hybrid
Quadrupole Orbitrap mass spectrometer that was equipped with an H-ESI II probe (ermo Fisher Scientic).
As a stationary phase, an Acquity UPLC® HSS T3 1.8 µm, 100 × 2 mm column protected by an Acquity UPLC®
HSS T3 1.8 µm, 2.1 × 5 mm guard column (Waters) was used. Two dierent separation methods were applied
for the sample sets prepared by the two dierent purication methods:
For samples puried with method 1, the mobile phase consisted of water + 0.1% HCOOH (solvent A) and
acetonitrile + 0.1% HCOOH (solvent B). e column temperature was 40 °C, the ow rate was 0.45 ml/min, and
the gradient was as follows: 0–15 min, 5–25% B in A; 15–22 min, 25–70% B in A; 22–25 min, 70–100% B in A;
25–26 min, 100% B; 26–26.3 min, 100–5% B in A; 26.3–32 min, 5% B in A. For samples puried with method
2, the mobile phase consisted of water (solvent A) and acetonitrile (solvent B). e column temperature was
40 °C and the ow rate was 0.4 ml/min. e gradient was as follows: 0–22 min, 10–72% B in A; 22–22.5 min,
72–100% B in A; 22.5–25 min, 100% B in A; 25–25.5 min, 100–10% B in A; 25.5–30 min, 10% B in A. Injection
volume for both methods was 3 µl.
e mass spectrometer was run in the ESI negative mode for separation method 1 and in the positive mode
for separation method 2. e MS parameters were as follows: Probe heater temperature was 350°C, capillary
temperature was 330°C, sheath gas ow was 50 arbitrary units, auxiliary gas ow was 10 arbitrary units, capillary
voltage was 3 kV in the negative mode and 3.5 kV in the positive mode, and S- lens RF level was 60. Scan range
was m/z 100–1,500, and resolution was 70,000 (FWHM) for full MS and 17,500 (FWHM) for data dependent MS2
scans. During the rst 1.0 min (separation method 1) and 0.9 min (separation method 2) of elution, the eluent
bypassed the mass spectrometer, and no data were recorded in order to avoid contamination of the MS with high
levels of carbohydrates that were expected to be still present in the samples despite the purication measures.
As blank samples, the solvents used for preparation of the samples were injected, and as QC samples, pooled
samples were prepared from both sample types (purication method 1 and 2) by mixing 10 µl of replicate 1 of
each sample. Blank samples were injected at the beginning, in the middle and at the end of each sequence, and
the QC samples were injected at intervals of 10 runs.
Data processing and evaluation for specialized metabolites. Raw analytical data were processed
with Compound Discoverer 3.2 using the following parameters: Retention time window for spectra selection
was 1–32 min for dataset 1 (acquired in the ESI negative mode with separation method 1) and 0.9–26 min for
dataset 2 (acquired in the ESI positive mode with separation method 2). Retention time alignment was per-
formed with adaptive curve model (maximum RT shi 2 min, maximum mass tolerance 10 ppm). For detecting
and grouping unknown compounds, S/N threshold was 3, minimum intensity threshold was 5,000,000 for data-
set 1 and 10,000,000 for dataset 2, and RT tolerance was 1min. S/N threshold for gap lling was 20. e output, a
data matrix consisting of retention time and intensity of every feature in every sample, was exported to MS Excel
for further treatment. In both datasets, rst, features derived from the analytical background were removed, and
the peak areas of the ISTD in all samples were graphically compared in order to inspect the dataset for samples
that had not been injected properly. On this basis, sample 23_2 was excluded from dataset 1, and sample 5_2 was
excluded from dataset 2.
en, all remaining peak areas were normalized to the peak area of the ISTD in the respective run. In order to
remove unreliable features, means and relative standard deviation were calculated for all features detected in the
pooled quality control samples. Features with a relative standard deviation above 33% were considered unreliable
and removed from the datasets. ese pretreated datasets were subjected to multivariate data analysis (MVDA)
using SIMCA 17 (Sartorius). Prior to MVDA, data were log-transformed and pareto-scaled. For unsupervised
MVDA, principal component analysis (HCA) and hierarchical clustering analysis (HCA) were used. For super-
vised MDVA, OPLS-DA models with three classes that correspond to the three apiary areas were constructed.
For tracking metabolites occurring at high level across all apiary areas, average peak areas per apiary area were
calculated for each metabolite in the two datasets. ose peaks occurring with average peak areas > 200,000,000
(dataset 1) and > 750,000,000 (dataset 2) in all three apiary areas were subjected to peak annotation.
Annotation of discriminant and common metabolites was performed either comparing retention time or MS
data with authentic reference compounds (ID level 1), or by comparing calculated molecular formula and MS/
Content courtesy of Springer Nature, terms of use apply. Rights reserved
13
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
MS fragmentation pattern with literature or database data (ID level 2), or in case that no literature or database
data were available, by theoretical interpretation of these data (ID level 3).
Data availability
e sequence datasets generated during the current study are available in the Sequence Read Archive reposi-
tory, in the BioProject PRJNA889252 https:// datav iew. ncbi. nlm. nih. gov/ object/ PRJNA 889252? revie wer= g7m
n7q3m t60s7 0onkm bf0m for the review, once accepted, in https:// www. ncbi. nlm. nih. gov/ sra/ PRJNA 889252.
Received: 12 May 2023; Accepted: 5 September 2023
References
1. Ollerton, J., Winfree, R. & Tarrant, S. How many owering plants are pollinated by animals?. Oikos 120, 321–326 (2011).
2. Klein, A.-M. et al. Importance of pollinators in changing landscapes for world crops. Proc. R. Soc. B Biol. Sci. 274, 303–313 (2007).
3. Klein, A. M., Boreux, V., Forno, F., Mupepele, A. C. & Pufal, G. Relevance of wild and managed bees for human well-being. Curr.
Opin. Insect Sci. 26, 82–88 (2018).
4. Di Pasquale, G. et al. Variations in the availability of pollen resources aect honey bee health. PLoS One 11, e0162818 (2016).
5. Naug, D. Nutritional stress due to habitat loss may explain recent honeybee colony collapses. Biol. Conserv. 142, 2369–2372 (2009).
6. Vodovnik, C., Borshagovski, A. M., Hakala, S. M., Leponiemi, M. & Freitak, D. Coeects of diet and neonicotinoid exposure on
honeybee mobility and food choice. Apidologie 52, 1–10 (2021).
7. Brodschneider, R. & Crailsheim, K. Nutrition and health in honey bees. Apidologie 41, 278–294 (2010).
8. Waller, G. D. Evaluating responses of honey bees to sugar solutions using an articial-ower feeder. Ann. Entomol. Soc. Am. 65,
857–862 (1972).
9. Pamminger, T., Becker, R., Himmelreich, S., Schneider, C. W. & Bergtold, M. e nectar report: Quantitative review of nectar sugar
concentrations oered by bee visited owers in agricultural and non-agricultural landscapes. PeerJ 2019, e6329 (2019).
10. Vaudo, A. D. et al. Pollen protein: Lipid macronutrient ratios may guide broad patterns of bee species oral preferences. Insects
11, 132 (2020).
11. Hendriksma, H. P. & Shar, S. Honey bee foragers balance colony nutritional deciencies. Behav. Ecol. Sociobiol. 70, 509–517
(2016).
12. Zarchin, S., Dag, A., Salomon, M., Hendriksma, H. P. & Shar, S. Honey bees dance faster for pollen that complements colony
essential fatty acid deciency. Behav. Ecol. Sociobiol. https:// doi. org/ 10. 1007/ s00265- 017- 2394-1 (2017).
13. Cook, S. M., Awmack, C. S., Murray, D. A. & Williams, I. H. Are honey bees’ foraging preferences aected by pollen amino acid
composition?. Ecol. Entomol. 28, 622–627 (2003).
14. Rotjan, R. D., Calderone, N. W. & Seeley, T. D. How a honey bee colony mustered additional labor for the task of pollen foraging.
Apidologie 33, 367–373 (2002).
15 Page, R. E., Scheiner, R., Erber, J. & Amdam, G. V. e development and evolution of division of labor and foraging specialization
in a social insect (Apis mellifera L.). Curr. Top. Dev. Biol. 74, 253–286 (2006).
16. Saunders, M. E. Insect pollinators collect pollen from wind-pollinated plants: Implications for pollination ecology and sustainable
agriculture. Insect. Conserv. Divers. 11, 13–31 (2018).
17. Hawkins, J. et al. Using DNA metabarcoding to identify the oral composition of honey: A new tool for investigating honey bee
foraging preferences. PLoS ONE 10, e0134735 (2015).
18. Danner, N., Molitor, A. M., Schiele, S., Härtel, S. & Stean-Dewenter, I. Season and landscape composition aect pollen foraging
distances and habitat use of Honey bees. Ecol. Appl. 26, 1920–1929 (2016).
19. Coey, M. F. & Breen, J. Seasonal variation in pollen and nectar sources of honey bees in Ireland. J. Apic. Res. 36, 63–76 (1997).
20. McMinn-Sauder, H., Lin, C. H., Eaton, T. & Johnson, R. A comparison of springtime pollen and nectar foraging in honey bees
kept in urban and agricultural environments. Front. Sustain. Food Syst. 6, 66 (2022).
21. De Vere, N. et al. Using DNA metabarcoding to investigate honey bee foraging reveals limited ower use despite high oral avail-
ability. Sci. Rep. 7, 1–10 (2017).
22. Von Der Ohe, W., PersanoOddo, L., Piana, M. L., Morlot, M. & Martin, P. Harmonized methods of melissopalynology. Apidologie
35, 18–25 (2004).
23. Cannizzaro, C. et al. Forest landscapes increase diversity of honeybee diets in the tropics. For. Ecol. Manag. 504, 119869 (2022).
24 Wirta, H. K., Bahram, M., Miller, K., Roslin, T. & Vesterinen, E. Reconstructing the ecosystem context of a species: Honey-borne
DNA reveals the roles of the honeybee. PLoS One 17, e0268250 (2022).
25. Wirta, H., Abrego, N., Miller, K., Roslin, T. & Vesterinen, E. DNA traces the origin of honey by identifying plants, bacteria and
fungi. Sci. Rep. 11, 4798 (2021).
26. omson, J. D., Draguleasa, M. A. & Tan, M. G. Flowers with caeinated nectar receive more pollination. Arthropod. Plant Interact.
9, 1–7 (2015).
27. Köhler, A., Pirk, C. W. W. & Nicolson, S. W. Honeybees and nectar nicotine: Deterrence and reduced survival versus potential
health benets. J. Insect Physiol. 58, 286–292 (2012).
28. Rivest, S. & Forrest, J. R. K. Defence compounds in pollen: Why do they occur and how do they aect the ecology and evolution
of bees?. New Phytol. 225, 1053–1064 (2020).
29. Stevenson, P. C., Nicolson, S. W. & Wright, G. A. Plant secondary metabolites in nectar: Impacts on pollinators and ecological
functions. Funct. Ecol. 31, 65–75 (2017).
30. Roessink, I. & van der Steen, J. J. M. Beebread consumption by honey bees is fast: Results of a 6-week eld study. J. Apic. Res. 60,
659–664 (2021).
31. Eyer, M., Neumann, P. & Dietemann, V. A look into the cell: Honey storage in honey bees Apis mellifera. PLoS One 11, e0161059
(2016).
32. Deagle, B. E. et al. Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?. Mol.
Ecol. 28, 391–406 (2019).
33. Bell, K. L. et al. Quantitative and qualitative assessment of pollen DNA metabarcoding using constructed species mixtures. Mol.
Ecol. 28, 431–455 (2019).
34. Filipiak, M., Walczyńska, A., Denisow, B., Petanidou, T. & Ziółkowska, E. Phenology and production of pollen, nectar, and sugar
in 1612 plant species from various environments. Ecology 103, e3705 (2022).
35. Requier, F. et al. Honey bee diet in intensive farmland habitats reveals an unexpectedly high ower richness and a major role of
weeds. Ecol. Appl. 25, 881–890 (2015).
36. Latty, T. & Trueblood, J. S. How do insects choose owers? A review of multi-attribute ower choice and decoy eects in ower-
visiting insects. J. Anim. Ecol. 89, 2750–2762 (2020).
Content courtesy of Springer Nature, terms of use apply. Rights reserved
14
Vol:.(1234567890)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
37 Milla, L., Schmidt-Lebuhn, A., Bovill, J. & Encinas-Viso, F. Monitoring of honey bee oral resources with pollen DNA metabarcod-
ing as a complementary tool to vegetation surveys. Ecol. Solut. Evid. 3, 10. https:// doi. org/ 10. 1002/ 2688- 8319. 12120 (2022).
38. Jones, L. et al. Temporal patterns of honeybee foraging in a diverse oral landscape revealed using pollen DNA metabarcoding of
honey. Integr. Comp. Biol. 62, 199–210 (2022).
39. Lowe, A., Jones, L., Brennan, G., Creer, S. & de Vere, N. Seasonal progression and dierences in major oral resource use by bees
and hoveries in a diverse horticultural and agricultural landscape revealed by DNA metabarcoding. J. Appl. Ecol. 59, 1484–1495
(2022).
40. Lowe, A. et al. Temporal change in oral availability leads to periods of resource limitation and aects diet specicity in a generalist
pollinator. Mol. Ecol. https:// doi. org/ 10. 1111/ MEC. 16719 (2022).
41 Ruottinen, L., Ollikka, T., Vartiainen, H. & Seppälä, A. Mehiläishoitoa käytännössä: osa 1 (Suomen mehiläishoitajain liitto SML,
2003).
42. Danner, N., Keller, A., Härtel, S. & Stean-Dewenter, I. Honey bee foraging ecology: Season but not landscape diversity shapes
the amount and diversity of collected pollen. PLoS ONE 12, e0183716 (2017).
43 Schmidt, L. S., Schmidt, J. O., Hima, Rao, Weiyi, W. & Ligen, Xu. Feeding preference and survival of young worker honey bees
(Hymenoptera: Apidae) fed rape, sesame, and sunower pollen. J. Econ. Entomol. 88, 1591–1595 (1995).
44. Di Pasquale, G. et al. Inuence of pollen nutrition on honey bee health: Do pollen quality and diversity matter?. PLoS ONE 8,
e72016 (2013).
45. Nasti, R. et al. An analytical investigation of hydroxylated cinnamoyl polyamines as biomarkers of commercial bee pollen botanical
origin. Int. J. Food Sci. Technol. 57, 7787–7796 (2022).
46. Qiao, J. et al. Phenolamide and avonoid glycoside proles of 20 types of monooral bee pollen. Food Chem. 405, 134800 (2023).
47 . Palmer-Young, E. C. et al. Chemistry of oral rewards: intra- and interspecic variability of nectar and pollen secondary metabolites
across taxa. Ecol. Monogr. 89, e01335 (2019).
48. Zhang, H., Liu, R. & Lu, Q. Separation and characterization of phenolamines and avonoids from rape bee pollen, and comparison
of their antioxidant activities and protective eects against oxidative stress. Molecules 25, 1264 (2020).
49. Negri, P. et al. Abscisic acid enhances the immune response in Apis mellifera and contributes to the colony tness. Apidologie 46,
542–557 (2015).
50. Ramirez, L. et al. Abscisic acid enhances cold tolerance in honeybee larvae. Proc. R. Soc. B Biol. Sci. 284, 20162140 (2017).
51. Isidorov, V. A., Czyzewska, U., Jankowska, E. & Bakier, S. Determination of royal jelly acids in honey. Food Chem. 124, 387–391
(2011).
52. Kokotou, M. G., Mantzourani, C., Babaiti, R. & Kokotos, G. Study of the royal jelly free fatty acids by liquid chromatography-high
resolution mass spectrometry (LC-HRMS). Metabolites 10, 40 (2020).
53. Cheung, Y., Meenu, M., Yu, X. & Xu, B. Phenolic acids and avonoids proles of commercial honey from dierent oral sources
and geographic sources. Int. J. Food Prop. 22, 290–308 (2019).
54. Koulis, G. A. et al. orough investigation of the phenolic prole of reputable Greek honey varieties: Varietal discrimination and
oral markers identication using liquid chromatography–high-resolution mass spectrometry. Molecules 27, 4444 (2022).
55 Tomás-Barberán, F. A., Martos, I., Ferreres, F., Radovic, B. S. & Anklam, E. HPLC avonoid proles as markers for the botanical
origin of European unioral honeys: HPLC avonoid proles as unioral honey markers. J. Sci. Food Agric. 81(5), 485–496. https://
doi. org/ 10. 1002/ jsfa. 836 (2001).
56 Jerković, I., Kuś, P. M., Tuberoso, C. I. G. & Šarolić, M. Phytochemical and physical–chemical analysis of Polish willow (Salix spp.)
honey: Identication of the marker compounds. Food Chem. 145, 8–14. https:// doi. org/ 10. 1016/j. foodc hem. 2013. 08. 004 (2014).
57. Jerković, I. et al. Red clover (Trifolium pratense L.) honey: Volatiles chemical-proling and unlocking antioxidant and anticorrosion
capacity. Chem. Pap. 70, i–xi (2016).
58. McLoone, P. et al. Qualitative phytochemical analysis and invitro investigation of the immunomodulatory properties of honeys
produced in Kazakhstan. Nat. Prod. Res. 37, 996–1001 (2023).
59. Leponiemi, M., Wirta, H. & Freitak, D. Trans-generational immune priming against American Foulbrood does not aect the
performance of honeybee colonies. Front. Vet. Sci. 10, 202 (2023).
60. Visscher, P. K. & Seeley, T. D. Foraging strategy of honeybee colonies in a temperate deciduous forest. Ecology 63, 1790–1801
(1982).
61. Beekman, M. & Ratnieks, F. L. W. Long-range foraging by the honey-bee Apis mellifera L. Funct. Ecol. 14, 490–496 (2000).
62. European Environment Agency (EEA). European Union, Copernicus Land Monitoring Service. (2018).
63. Mossberg, B. & Stenberg, L. Maastokasvio (Tammi, 2007).
64. Chen, S. et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS ONE 5, 1–8
(2010).
65. White, T., Bruns, T., Lee, S. & Taylor, J. Amplication and direct sequencing of fungal ribosomal RNA genes for phylogenetics.
PCR Protoc. Guide Methods Appl. 18, 315–322 (1990).
66. Vesterinen, E. J., Puisto, A. I. E., Blomberg, A. S. & Lille y, T. M. Table for ve, please: Dietary partitioning in boreal bats. Ecol. Evol.
8, 10914–10937 (2018).
67 Vesterinen, E. J., Kaunisto, K. M. & Lilley, T. M. A global class reunion with multiple groups feasting on the declining insect
smorgasbord. Sci. Rep. https:// doi. org/ 10. 1038/ s41598- 020- 73609-9 (2020).
68. Kaunisto, K. M. et al. reats from the air: Damsely predation on diverse prey taxa. J Anim Ecol 89, 1365–1374 (2020).
69. Rognes, T., Flouri, T., Nichols, B., Quince, C. & Mahé, F. VSEARCH: a versatile open source tool for metagenomics. PeerJ https://
doi. org/ 10. 7717/ peerj. 2584 (2016).
70. Edgar, R. C. & Bateman, A. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460–2461 (2010).
71. Banchi, E. et al. PLANiTS: A curated sequence reference dataset for plant ITS DNA metabarcoding. Database 2020, 155 (2020).
72. Lee, T., Alemseged, Y. & Mitchell, A. Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding
of faeces. Metabarcod. Metagenom. 2, e22467 (2018).
73. Alberdi, A., Garin, I., Aizpurua, O. & Aihartza, J. e foraging ecology of the Mountain Long-eared bat Plecotus macrobullaris
revealed with DNA mini-barcodes. PLoS One 7, e35692 (2012).
74. R Core Team. in R: A Language and Environment for Statistical Computing. https:// www.r- proje ct. org/ (2022).
75. Oksanen, J. et al. in vegan: Community Ecology Package. https:// CRAN.R- proje ct. org/ packa ge= vegan (2022).
76. Bates, D., Mächler, M., Bolker, B. & Walker, S. Fitting linear mixed-eects models using lme4. J. Stat. Sow. 67, 1–48 (2015).
77. Lenth, R. V. in emmeans: Estimated Marginal Means, aka Least-Squares Means. https:// cran.r- proje ct. org/ packa g e= emmea n s (2021).
78. Hartig, F. in DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models. https:// cran.r- proje ct. org/
packa ge= DHARMa (2020).
79 De Caceres, M. & Legendre, P. Associations between species and groups of sites: indices and statistical inference. Ecology 90,
3566–3574 (2009).
80. Zhou, J. et al. Floral classication of honey using liquid chromatography–diode array detection–tandem mass spectrometry and
chemometric analysis. Food Chem. 145, 941–949 (2014).
81. Sixto, A., Niell, S. & Heinzen, H. Straightforward determination of pyrrolizidine alkaloids in honey through simplied methanol
extraction (QuPPE) and LC–MS/MS modes. ACS Omega 4, 22632–22637 (2019).
Content courtesy of Springer Nature, terms of use apply. Rights reserved
15
Vol.:(0123456789)
Scientic Reports | (2023) 13:14753 | https://doi.org/10.1038/s41598-023-42102-4
www.nature.com/scientificreports/
Acknowledgements
We would like to thank Jason Rissanen, Tristan Ubaldi and Jaakko Kuurne for the help with eldwork and
Marjo Kilpinen and Eija Hakala for assisting in the laboratory work. We also thank the two beekeepers for their
expertise and maintaining the hives during the study. e study was funded by a grant to HW from Kone foun-
dation, a grant to ML from Emil Aaltonen Foundation (220131) and a grant to DF from the Finnish Cultural
Foundation (00180246). NAWI Graz is thanked for supporting Central Lab Environmental, Plant & Microbial
Metabolomics.Open access funded by Helsinki University Library.
Author contributions
M.L., D.F., M.M.-T. and H.W. designed the study. M.L., M.M.-T., M.T. and H.W. conducted the eldwork. M.L.
and H.W. did the DNA laboratory analyses and E.P.-W. the secondary metabolite laboratory analyses. E.V. and
H.W. did the bioinformatic analyses and M.L., M.M.-T., A.B.-S., E.P.-W. and H.W. the statistical analyses. M.L.
and H.W. wrote the rst dra of the manuscript. All authors contributed to and approved the manuscript.
Competing interests
e authors declare no competing interests.
Additional information
Supplementary Information e online version contains supplementary material available at https:// doi. org/
10. 1038/ s41598- 023- 42102-4.
Correspondence and requests for materials should be addressed to H.W.
Reprints and permissions information is available at www.nature.com/reprints.
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and
institutional aliations.
Open Access is article is licensed under a Creative Commons Attribution 4.0 International
License, which permits use, sharing, adaptation, distribution and reproduction in any medium or
format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the
Creative Commons licence, and indicate if changes were made. e images or other third party material in this
article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the
material. If material is not included in the article’s Creative Commons licence and your intended use is not
permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from
the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/.
© e Author(s) 2023
Content courtesy of Springer Nature, terms of use apply. Rights reserved
1.
2.
3.
4.
5.
6.
Terms and Conditions
Springer Nature journal content, brought to you courtesy of Springer Nature Customer Service Center GmbH (“Springer Nature”).
Springer Nature supports a reasonable amount of sharing of research papers by authors, subscribers and authorised users (“Users”), for small-
scale personal, non-commercial use provided that all copyright, trade and service marks and other proprietary notices are maintained. By
accessing, sharing, receiving or otherwise using the Springer Nature journal content you agree to these terms of use (“Terms”). For these
purposes, Springer Nature considers academic use (by researchers and students) to be non-commercial.
These Terms are supplementary and will apply in addition to any applicable website terms and conditions, a relevant site licence or a personal
subscription. These Terms will prevail over any conflict or ambiguity with regards to the relevant terms, a site licence or a personal subscription
(to the extent of the conflict or ambiguity only). For Creative Commons-licensed articles, the terms of the Creative Commons license used will
apply.
We collect and use personal data to provide access to the Springer Nature journal content. We may also use these personal data internally within
ResearchGate and Springer Nature and as agreed share it, in an anonymised way, for purposes of tracking, analysis and reporting. We will not
otherwise disclose your personal data outside the ResearchGate or the Springer Nature group of companies unless we have your permission as
detailed in the Privacy Policy.
While Users may use the Springer Nature journal content for small scale, personal non-commercial use, it is important to note that Users may
not:
use such content for the purpose of providing other users with access on a regular or large scale basis or as a means to circumvent access
control;
use such content where to do so would be considered a criminal or statutory offence in any jurisdiction, or gives rise to civil liability, or is
otherwise unlawful;
falsely or misleadingly imply or suggest endorsement, approval , sponsorship, or association unless explicitly agreed to by Springer Nature in
writing;
use bots or other automated methods to access the content or redirect messages
override any security feature or exclusionary protocol; or
share the content in order to create substitute for Springer Nature products or services or a systematic database of Springer Nature journal
content.
In line with the restriction against commercial use, Springer Nature does not permit the creation of a product or service that creates revenue,
royalties, rent or income from our content or its inclusion as part of a paid for service or for other commercial gain. Springer Nature journal
content cannot be used for inter-library loans and librarians may not upload Springer Nature journal content on a large scale into their, or any
other, institutional repository.
These terms of use are reviewed regularly and may be amended at any time. Springer Nature is not obligated to publish any information or
content on this website and may remove it or features or functionality at our sole discretion, at any time with or without notice. Springer Nature
may revoke this licence to you at any time and remove access to any copies of the Springer Nature journal content which have been saved.
To the fullest extent permitted by law, Springer Nature makes no warranties, representations or guarantees to Users, either express or implied
with respect to the Springer nature journal content and all parties disclaim and waive any implied warranties or warranties imposed by law,
including merchantability or fitness for any particular purpose.
Please note that these rights do not automatically extend to content, data or other material published by Springer Nature that may be licensed
from third parties.
If you would like to use or distribute our Springer Nature journal content to a wider audience or on a regular basis or in any other manner not
expressly permitted by these Terms, please contact Springer Nature at
onlineservice@springernature.com
... Honey is also consumed during the active foraging season, whenever nectar availability is lower or resource demand is high. Thus, stored honey provides a time-integrated sample of the colony's interactions over a time period extending over approximately the past two months [23,29,30]. As well as providing convenient interaction sampling, the honey bee is an important model system because of its immense importance as a crop and wild plant pollinator [31,32]. ...
... In this context, honey bees allow us to test whether the Latitudinal Biotic Interaction Hypothesis holds for different types of interactions. Honey bees actively select a variety of plants to forage on, for both nectar and pollen, from the available flowering plant pool [29,[33][34][35]. ...
... Large fields of nectar-producing crop plants, such as oilseed rape or sunflower, are known to attract honey bees and guide their foraging towards these crops, although honey bees' preferences for these crops depends on the other plants available [90,91]. In a similar manner, abundantly-flowering wild plants such as raspberry or willow can be the main nectar source for honey bees [29,83]. If large crop fields or highly-abundant wild plants occur more often towards the tropics, this could explain the decrease in interaction partners towards equator. ...
Article
Full-text available
Background Contrasting hypotheses suggest that the number of biotic interactions per species could either increase towards the equator due to the increasing richness of potential interaction partners (Neutral theory), or decrease in the tropics due to increased biotic competition (Latitudinal Biotic Interaction Hypothesis). Empirical testing of these hypotheses remains limited due to practical limitations, differences in methodology, and species turnover across latitudes. Here, we focus on a single species with a worldwide distribution, the honey bee ( Apis mellifera L.), to assess how the number of different types of interactions vary across latitudes. Foraging honey bees interact with many organisms in their local environment, including plants they actively select to visit and microbes that they largely encounter passively (i.e., unintentionally and more or less randomly). Tissue pieces and spores of these organisms are carried to the hive by foraging honey bees and end up preserved within honey, providing a rich record of the species honey bees encounter in nature. Results Using honey samples from around the globe, we show that while honey bees visit more plant taxa at higher latitudes, they encounter more bacteria in the tropics. Conclusions These different components of honey bees’ biotic niche support the latitudinal biotic interaction hypothesis for actively-chosen interactions, but are more consistent with neutral theory (assuming greater bacterial richness in the tropics) for unintentional interactions.
... The foraging behavior of honey bees can now be better understood and analyzed through innovative techniques such as pollen DNA metabarcoding (Smart et al. 2017;Tommasi et al. 2021;Leponiemi et al. 2023). Traditionally, pollen taxonomic determination relied on microscopy, which had limitations in identifying pollen at finer taxonomic levels (Leontidou et al. 2017). ...
... These plants are recognized for their significant pollen biomass per flower (Layek et al. 2020) ( Figure S5). Despite the ability of honey bees to collect from a diverse range of resources, they also exhibit high foraging floral constancy, or a preference to visit a specific flower species when a valuable and abundant resource is available (Vere et al. 2017;Lau et al. 2019;Leponiemi et al. 2023). Regions characterized by diversified flora are more likely to contain particular plant species that provide a balanced nutritional source for bees. ...
Article
Full-text available
Honey bees play a critical role in pollination-dependent agriculture, and their colonies have been declining in various regions worldwide. Understanding the factors that influence colony health is essential. Pollen and nectar are primary sources of carbohydrates, micro-nutrients, and macro-nutrients necessary for bee survival. Floral diversity, abundance, and nutritional content significantly impact honey bee health. This study investigates how the diversity and structure of flowering plant communities, including landscape fragmentation, influence the nutritional availability reflected in the stored pollen within hives and its implications for the health of honey bees. Our study demonstrates that landscape diversity influences the protein-to-lipid ratio of pollen diets, specifically the protein-to-lipid ratio increases as the landscape diversity rises. This increase in protein-to-lipid ratio was also associated with the increased total bee density. Diverse pollen species in the diet enhance nutritional content, promoting healthier bees through resource complementarity. Bees exhibit adaptive foraging behavior, systematically diversifying their floral sources to optimize nutrient intake. The diversity in pollen reserves also correlates negatively with Varroa destructor prevalence, likely because the diversity of pollen enhances the nutrition and overall health of honey bee colonies. Our study emphasizes the value of biodiverse settings that offer a steady flow of floral supplies for the health and development of bee pollinator populations and their associated ecosystem services. pollen diversity / pollen P:L ratio / landscape diversity / honey bee / nutritional quality / plant species diversity / foraging behavior / colony health
... It is abundant worldwide 7,8 and contributes to pollination of both wild and cultivated plants 4,9 while it forages for nectar or pollen. Honey bees use a variety of flowering plants, but selectively visit only some plants in their local community [10][11][12] . Their choices impact which plants may be pollinated -as well as which other pollinators they may compete with for shared food resources 13,14 . ...
... Much of this DNA comes from pollen (either pollen that fell into nectar within the flower or pollen derived from a bee's body) 15 , but there is also non-pollen plant DNA in honey 16,17 . Plant DNA in honey samples is already used to track which plants honey bees have visited and collected nectar from 10,16,[18][19][20][21][22] . If plant DNA can also be recovered from older samples, then honey may also provide a historical record of interactions. ...
Article
Full-text available
Recent environmental changes due to land-use and climate change threaten biodiversity and the ecosystem services it provides. Understanding the true scope of these changes is complicated by the lack of historical baselines for many of the interactions underpinning ecosystem services, such as pollination, or disservices, such as disease spreading. To assess changes in such services, it is vital to find ways of comparing past and current interactions between species. Here, we focus on interactions between honey bees – one of the world’s most important agricultural pollinators, the plants they visit, and the microbes they encounter in the environment. DNA in honey offers insights into the contemporary interactions of honey bees. Old honey samples could serve to describe honey bees’ interactions in previous decades, providing a baseline against which to assess changes in interactions over time. By identifying the taxonomic origin of plant, bacterial and fungal DNA in fifty-year-old honey samples, we show that plant DNA can reveal which plants honey bees visited in the past. Likewise, microbe DNA records the microbes, including pollinator and plant pathogens, honey bees encountered and possibly spread. However, some differences in the DNA recovered between old and new honey suggest that differences in DNA degradation of different microbes could bias naive comparisons between samples. Like other types of ancient samples, old honey may be most useful for identifying interactions that historically occurred and should not be taken as proof that an interaction did not occur. Keeping these limits of the data in mind, time series of honey may offer unique information about how honey bees’ associations with flowers and microbes have changed during decades of environmental change.
... Few plants produce pollen that meets all nutritional requirements of honeybees. As such, honeybees must forage selectively from a diversity of flowers to fulfill their nutritional needs [5,[9][10][11][12][13][14]. ...
Article
Full-text available
A steady supply of nutritionally adequate pollen from diverse flower sources is crucial for honeybee colonies. However, climate instability, large-scale agriculture and the loss of flower-rich landscapes have made this supply scarce and unpredictable, threatening both apiculture and sustainable crop pollination. We developed a nutritionally complete pollen-replacing diet that supports continuous brood production from May to October in colonies without access to pollen. Omitting isofucosterol, the third most abundant sterol in honeybees, causes significant reductions in brood production and neuromuscular dysfunction in adults, identifying isofucosterol as a critical micronutrient. In contrast, omitting 24-methylene cholesterol—the most abundant honeybee sterol—does not significantly affect brood production, and surprisingly, bees remain viable without it. Colonies fed a commercial diet severely declined in brood production after 36 days and died out. In a season-long experiment investigating the commercial pollination of blueberry and sunflower fields, a treatment group fed the complete diet overcame the detrimental effects of nutritional stress, unlike colonies in ‘No Diet’ and ‘Commercial Diet’ groups. This study suggests that feeding a complete, pollen-replacing diet to nutritionally stressed colonies can address the root causes of honeybees' growing nutritional deficiencies, supporting their health and their vital pollination services.
... A comprehensive investigation was conducted on 40 samples obtained from colonies of A. cerana and A. florea honey bees to explore their foraging preferences of honey bees for pollen and nectar. This research focused on the surrounding flowering plants near the hives located within a distance of 4 km (Fig. 1) from the Anavada region in Patan, Gujarat, India 26 . Samples were obtained directly from natural extractions (collection of honey samples directly from the environment) from single apiaries in clean food-grade vessels, and the sampling apparatus was cleaned throughout the sampling process. ...
Article
Full-text available
Honey DNA metabarcoding provides precise and comprehensive data on the origins of honey and the plants that honey bees select for feeding. Honey produced by both Apis cerana and Apis florea, along with the determination of honey bee floral preferences, has the potential to assist researchers in strategically selecting appropriate plant species that can effectively enhance the growth and prosperity of honey bee colonies. Honey samples collected from 40 places in North Gujarat, India, was produced by two species of honey bees, A. cerana and A. florea. Physicochemical analysis of honey samples was performed, including characterization of pH, ash content, electrical conductivity, brix content, free acidity, protein, amino acids, alkaloids, carbohydrates, tannins, flavonoids, phenolic components, and sterol content. Using DNA metabarcoding techniques, an investigation was conducted to discern the nectar preferences of A. cerana and A. florea. The results of the DNA metabarcoding study demonstrated a consistent enrichment trend for 64 plant species across both honey bee species. The plant species Medicago hybrida had the highest abundance in honey produced by A. florea, but Picrasma quassioides was more abundant in honey produced by A. cerana. In addition, the sugar content of honey samples collected from both honey bee species was analyzed by high-performance liquid chromatography (HPTLC). Our study’s honey metabarcoding and physicochemical analysis effectively categorized and distinguished between the two honey samples and the activity of Indian native A. cerana and A. florea. This study emphasizes the potential of metabarcoding to identify the specific plant sources of honey and improve our knowledge of honey bee foraging habits. This information is vital for promoting the health and production of honey bee colonies.
... The companion plants were chosen because of their high nutritional benefits (nectar and pollen), long blooming period, attractiveness to honeybees, and easiness to grow [27][28][29][30]. Honeybees also select plants to forage based on their colony's needs [31]. The food sources (companion plants) made up 10% of the total area [26] (Figures 1 and 2). ...
Article
Full-text available
Honeybees are of economic importance not only for honey production, but also for crop pollination, which amounts to USD 20 billion per year in the United States. However, the number of honeybee colonies has declined more than 40% during the last few decades. Although this decline is attributed to a combination of factors (parasites, diseases, pesticides, and nutrition), unlike other factors, the effect of nutrition on honeybee health is not well documented. In this study, we assessed the differential expression of seven genes linked to honeybee health under three different diets. These included immune function genes [Cactus, immune deficiency (IMD), Spaetzle)], genes involved in nutrition, cellular defense, longevity, and behavior (Vitellogenin, Malvolio), a gene involved in energy metabolism (Maltase), and a gene associated with locomotory behavior (Single-minded). The diets included (a) commercial pollen patties and sugar syrup, (b) monofloral (anise hyssop), and (c) polyfloral (marigold, anise hyssop, sweet alyssum, and basil). Over the 2.7-month experimental periods, adult bees in controls fed pollen patties and sugar syrup showed upregulated Cactus (involved in Toll pathway) and IMD (signaling pathway controls antibacterial defense) expression, while their counterparts fed monofloral and polyfloral diets downregulated the expression of these genes. Unlike Cactus and IMD, the gene expression profile of Spaetzle (involved in Toll pathway) did not differ across treatments during the experimental period except that it was significantly downregulated on day 63 and day 84 in bees fed polyfloral diets. The Vitellogenin gene indicated that monofloral and polyfloral diets significantly upregulated this gene and enhanced lifespan, foraging behavior, and immunity in adult bees fed with monofloral diets. The expression of Malvolio (involved in sucrose responsiveness and foraging behavior) was upregulated when food reserves (pollen and nectar) were limited in adult bees fed polyfloral diets. Adult bees fed with monofloral diets significantly upregulated the expression of Maltase (involved in energy metabolisms) compared to their counterparts in control diets to the end of the experimental period. Single-Minded Homolog 2 (involved in locomotory behavior) was also upregulated in adult bees fed pollen patties and sugar syrup compared to their counterparts fed monofloral and polyfloral diets. Thus, the food source significantly affected honeybee health and triggered an up- and downregulation of these genes, which correlated with the health and activities of the honeybee colonies. Overall, we found that the companion crops (monofloral and polyfloral) provided higher nutritional benefits to enhance honeybee health than the pollen patty and sugar syrup used currently by beekeepers. Furthermore, while it has been reported that bees require pollen from diverse sources to maintain a healthy physiology and hive, our data on nuclear colonies indicated that a single-species diet (such as anise hyssop) is nutritionally adequate and better or comparable to polyfloral diets. To the best of our knowledge, this is the first report indicating better nutritional benefits from monofloral diets (anise hyssop) over polyfloral diets for honeybee colonies (nucs) in semi-large-scale experimental runs. Thus, we recommend that the landscape of any apiary include highly nutritious food sources, such as anise hyssop, throughout the season to enhance honeybee health.
... Neither bee species collected all of its pollen solely based on the abundance of the different morphotypes over the landscape, and this was true throughout their foraging season; they avoided some pollen types, preferred others and collected in proportion with resource abundance for yet other morphotypes. Both honeybees and bumble bees chose between plant species and preferentially visited some plant species over others [44,45]. One surprising finding from this study was that the two bee species collected pollen from similar resources over the entire foraging season, although the most collected pollen types varied between species at any given survey. ...
Article
Full-text available
Agricultural landscapes often provide an impoverished environment for bees given their limited plant and pollen diversity. Agri-environment schemes (AES) such as flower strips have been developed to improve the quality of the agricultural environment for bees but their efficacy varies with their composition and, for specific pollinators, with the value of the available plant species. This study provides a detailed report of the pollen collection patterns of two bee species, the western honeybee (Apis mellifera L.) and the common eastern bumble bee (Bombus impatiens Cresson), over their foraging season. We compared the floral constancy, pollen richness and diversity of the two bee species, and the pollen morphotypes of bee-collected pollen in relation to resource availability. The honeybee was more flower constant while the bumble bee collected a greater family level diversity of pollen. While both bee species collected similar resources over their entire foraging season, the preferred morphotypes in given surveys differed between bee species. Neither bee species collected resources based on their availability but indicated patterns of preference and avoidance. We discuss how such knowledge can inform the composition of AES to best sustain these pollinators in more impoverished depauperate agricultural landscapes.
... A total of 15 VOCs (i.e., butyroin, furfural, furfural <5-methyl->, hexadecanoate <methyl->, hexanoic acid, hydroxy methyl furfural, maltol, nonane <n->, octadecenoate <methyl->, octanoic acid <n->, pent-4-enoic acid <2-methyl->, pyrazine <2-methoxy-,6-methyl->, pyromucic acid methyl ester, thiazole <4,5-dimethyl-> and undecanol<5->) were present in most honey samples of different geographical origin ( Table 2 and Table 3). This result is also supported by other studies [48,49] on Apis spp. honey from different botanical and geographical sources, which show almost similar content of volatile compounds. ...
Article
Full-text available
The content of volatile organic compounds (VOCs), dihydroxyacetone (DHA) and methylglyoxal (MGO) in honey depends on the geographical origin but has little been studied in Sabah. The aim of this study was to determine the content of VOCs, DHA and MGO in raw honey of Apis cerana at six study sites that differ in their geographical origin. Each of the study sites contains 3 replicates of honey samples: Ulu Kiulu, Tuaran (adjacent to lowland rainforest park), Nadau, Tamparuli (adjacent to highland forest park), Membatu Laut, Kudat (coconut farm), BHBC, Kudat (Acacia and secondary forest), Kg. Gana, Kota Marudu (rubber and orchard) and FSA, Sandakan (oil palm and orchard). Samples were subjected to liquid-liquid extraction process, followed by gas chromatography-mass spectrometry (GC-MS) for identification and characterisation of VOCs. The DHA and MGO in Apis cerana honey were analysed by high performance liquid chromatography (HPLC). The results indicate that a higher number of VOCs and unique VOCs were identified in honey from forest and mixed forest sites than in honey from other study sites. The study found that the content of DHA and MGO varied according to geographical origin (p < 0.001). The honey sample from Gana, Kota Marudu had the highest DHA concentration (mg/kg), followed by FSA, Sandakan and Membatu Laut, Kudat. The honey sample from BHBC had the highest MGO concentration (mg/kg), followed by Membatu Laut, Kudat and Ulu Kiulu, Tuaran. This study concluded that geographical origin with different botanical sources plays a crucial role in the bioavailability of bioactive nutraceutical/functional therapeutic compounds in multifloral honey, A. cerana in Sabah.
Article
Interactions between honeybees and the environment are often difficult to achieve, particularly when the purpose is to optimize beekeeping production. The present study proposed to monitor the space-time variations of melliferous resources potentially exploited by colonies within a foraging area in Bosnia & Herzegovina, characterized by contrasting landscapes. The combination of methods involving Geographical Information Systems, floristic monitoring, and modelling enabled honey production potential to be calculated for the entire foraging area. In particular, the location of taxa, their abundance, diversity, and phenology enabled us to determine the spatial distribution and temporal variation of production potential. Robinia pseudoacacia and Rubus sp. made a major contribution. This potential was highly contrasted, with distant areas from the apiary more attractive than closer ones, depending on the moment. Specific periods, such as June were particularly conducive to establishing a high potential. Forest and grassland played a major role in the temporal succession, mainly because of the area covered, but moments with lower potential were supported by specific land uses (orchards). Land uses with a small surface area, such as orchards, wasteland, and riparian zones had a high potential per unit area, and improving the production potential within a foraging area could involve increasing these specific surfaces.
Article
Full-text available
Vector control remains an important strategy worldwide to prevent human infection with pathogens transmitted by arthropods. Vector control strategies rely on accurate identification of vector taxa along with vector‐specific biological indicators such as feeding ecology, infection prevalence and insecticide resistance. Multiple ‘DNA barcoding’ protocols have been published over the past several decades to support these applications, generally relying on informal manual approaches such as BLAST to assign taxonomic identity to the resulting sequences. We present a standardised informatic pipeline for analysis of DNA barcoding data from dipteran vectors, VecTreeID, that uses short‐read amplicon sequencing (AmpSeq) coupled with sequence similarity assessment (BLAST) and an evolutionary placement algorithm (EPA‐ng) to achieve vector taxonomic identification, capture bionomic features (blood and plant meal sources), determine Plasmodium infection status (for anopheline mosquitoes) and detect target‐site insecticide resistance mutations. The VecTreeID pipeline provides uncertainty in assignment through identifications at varying levels of taxonomic rank, a feature missing from many approaches to DNA barcoding, but important given gaps and labelling problems in public sequence databases. We validated an Illumina‐based implementation of VecTreeID on laboratory and field samples, and find that the blood meal amplicons can detect vertebrate DNA sequences up to 36 h post‐feeding, and that short‐read sequencing data are capable of sensitively detecting minor sequences in DNA mixtures representing multi‐species blood or nectar meals. This high‐throughput VecTreeID approach empowers researchers and public health professionals to survey and control arthropod disease vectors consistently and effectively.
Article
Full-text available
Honeybees are major pollinators for our food crops, but at the same time they face many stressors all over the world. One of the major threats to honeybee health are bacterial diseases, the most severe of which is the American Foulbrood (AFB). Recently a trans-generational vaccination approach against AFB has been proposed, showing strong potential in protecting the colonies from AFB outbreaks. Yet, what remains unstudied is whether the priming of the colony has any undesired side-effects. It is widely accepted that immune function is often a trade-off against other life-history traits, hence immune priming could have an effect on the colony performance. In this experiment we set up 48 hives, half of them with primed queens and half of them as controls. The hives were placed in six apiaries, located as pair of apiaries in three regions. Through a 2-year study we monitored the hives and measured their health and performance. We measured hive weight and frame contents such as brood amount, worker numbers, and honey yield. We studied the prevalence of the most common honeybee pathogens in the hives and expression of relevant immune genes in the offspring at larval stage. No effect of trans-generational immune priming on any of the hive parameters was found. Instead, we did find other factors contributing on various hive performance parameters. Interestingly not only time but also the region, although only 10 km apart from each other, had an effect on the performance and health of the colonies, suggesting that the local environment plays an important role in hive performance. Our results suggest that exploiting the trans-generational priming could serve as a safe tool in fighting the AFB in apiaries.
Article
Full-text available
In this study, the phytochemical profile of commercial pollen samples was investigated using different analytical approaches. The samples pollen composition was monitored by optical microscopy. The infrared spectrum of the ethanol extractable material form different pollen samples indicated the specific presence of an aromatic portion in samples dominated by pollens from arboreal species of sweet chestnut pollen grains (e.g. Castanea sativa Mill. and Prunus). In addition, the UPLC‐PDA analysis showed the ubiquitarian presence of an array of different derivatives confirmed as hydroxylated cinnamoyl derivatives of spermidine (major) and of spermine (minor). This profile appeared to be associated with the sample botanical origin. Samples dominated by chestnut honey pollen grains showed the highest content in total amount of these derivatives, with a peculiar profile dominated by the presence of N¹, N⁵, N¹⁰‐tricaffeoyl spermidine. The results showed that their average chemical composition is quantitatively and qualitatively correlated to their botanical origin, suggesting the feasibility of this approach as a practical tool to monitor plant population using honeybee pollen as a bioindicator of the impact of natural and anthropic processes at the local and global level.
Article
Full-text available
Generalist species are core components of ecological networks and crucial for the maintenance of biodiversity. Generalised species and networks are expected to be more resilient, therefore understanding the dynamics of specialisation and generalisation in ecological networks is a key focus in a time of rapid global change. Whilst diet generalisation is frequently studied, our understanding of how it changes over time is limited. We explore temporal variation in diet specificity in the honeybee (Apis mellifera), using pollen DNA metabarcoding of honey samples, through the foraging season, over two years. We find that overall, honeybees are generalists that visit a wide range of plants, but there is temporal variation in the degree of specialisation. Temporal specialisation of honeybee colonies corresponds to periods of resource limitation, identified as a lack of honey stores. Honeybees experience a lack of preferred resources in June when switching from flowering trees in spring to shrubs and herbs in summer. Investigating temporal patterns in specialisation can identify periods of resource limitation that may lead to species and network vulnerability. Diet specificity must therefore be explored at different temporal scales in order to fully understand species and network stability in the face of ecological change.
Article
Full-text available
To assess a species’ impact on its environment–and the environment’s impact upon a species–we need to pinpoint its links to surrounding taxa. The honeybee (Apis mellifera) provides a promising model system for such an exercise. While pollination is an important ecosystem service, recent studies suggest that honeybees can also provide disservices. Developing a comprehensive understanding of the full suite of services and disservices that honeybees provide is a key priority for such a ubiquitous species. In this perspective paper, we propose that the DNA contents of honey can be used to establish the honeybee’s functional niche, as reflected by ecosystem services and disservices. Drawing upon previously published genomic data, we analysed the DNA found within 43 honey samples from Northern Europe. Based on metagenomic analysis, we find that the taxonomic composition of DNA is dominated by a low pathogenicity bee virus with 40.2% of the reads, followed by bacteria (16.7%), plants (9.4%) and only 1.1% from fungi. In terms of ecological roles of taxa associated with the bees or taxa in their environment, bee gut microbes dominate the honey DNA, with plants as the second most abundant group. A range of pathogens associated with plants, bees and other animals occur frequently, but with lower relative read abundance, across the samples. The associations found here reflect a versatile the honeybee’s role in the North-European ecosystem. Feeding on nectar and pollen, the honeybee interacts with plants–in particular with cultivated crops. In doing so, the honeybee appears to disperse common pathogens of plants, pollinators and other animals, but also microbes potentially protective of these pathogens. Thus, honey-borne DNA helps us define the honeybee’s functional niche, offering directions to expound the benefits and drawbacks of the associations to the honeybee itself and its interacting organisms.
Article
Full-text available
Honey is a highly consumed commodity due to its potential health benefits upon certain consumption, resulting in a high market price. This fact indicates the need to protect honey from fraudulent acts by delivering comprehensive analytical methodologies. In this study, targeted, suspect and non-targeted metabolomic workflows were applied to identify botanical origin markers of Greek honey. Blossom honey samples (n = 62) and the unifloral fir (n = 10), oak (n = 24), pine (n = 39) and thyme (n = 34) honeys were analyzed using an ultra-high-performance liquid chromatography hybrid quadrupole time-of-flight mass spectrometry (UHPLC-q-TOF-MS) system. Several potential authenticity markers were revealed from the application of different metabolomic workflows. In detail, based on quantitative targeted analysis, three blossom honey markers were found, namely, galangin, pinocembrin and chrysin, while gallic acid concentration was found to be significantly higher in oak honey. Using suspect screening workflow, 12 additional bioactive compounds were identified and semi-quantified, achieving comprehensive metabolomic honey characterization. Lastly, by combining non-targeted screening with advanced chemometrics, it was possible to discriminate thyme from blossom honey and develop binary discriminatory models with high predic-tive power. In conclusion, a holistic approach to assessing the botanical origin of Greek honey is presented, highlighting the complementarity of the three applied metabolomic approaches.
Article
Full-text available
Honey is known to have antimicrobial, immunomodulatory and wound healing properties. The biological properties of honey have been attributed to phytochemicals derived from their source plants and research has focused on identifying the bioactive phytochemi-cals with therapeutic potential. In this study, we determined the ability of 5 honeys from Kazakhstan and manuka honey to stimulate TNF-a and TGF-b production by human keratinocytes. TNF-a and TGF-b levels increased over time in honey treated and untreated ker-atinocytes, whereas cells treated with sugar solutions that matched those of the honeys had reduced levels of both cytokines. This suggests that the non-sugar phytochemical components of the honeys may have prevented this decrease. Analysis by LC-MS confirmed that the honeys contained a diverse range of phytochemicals. Some phytochemicals e.g. pinobanksin and vanillin were present at different levels across the honey types, whereas other components, e.g. dicarboxylic acids and their glycosides, were abundant in all honeys. ARTICLE HISTORY
Article
Full-text available
Synopsis Understanding the plants pollinators use through the year is vital to support pollinator populations and mitigate for declines in floral resources due to habitat loss. DNA metabarcoding allows the temporal picture of nectar and pollen foraging to be examined in detail. Here, we use DNA metabarcoding to examine the forage use of honeybees (Apis mellifera L.) within a florally diverse landscape within the UK, documenting the key forage plants used and seasonal progression over two years. The total number of plant taxa detected in the honey was 120, but only 16 of these were found with a high relative read abundance of DNA, across the main foraging months (April–September). Only a small proportion of the available flowering genera in the landscape were used by the honeybees. The greatest relative read abundance came from native or near-native plants, including Rubus spp., Trifolium repens, the Maleae tribe including Crataegus, Malus, and Cotoneaster, and Hedera helix. Tree species were important forage in the spring months, followed by increased use of herbs and shrubs later in the foraging season. Garden habitat increased the taxon richness of native, near-native and horticultural plants found in the honey. Although horticultural plants were rarely found abundantly within the honey samples, they may be important for increasing nutritional diversity of the pollen forage.
Article
Full-text available
To predict the quantity and quality of food available to pollinators in various landscapes over time, it is necessary to collect detailed data on the pollen, nectar, and sugar production per unit area and the flowering phenology of plants. Similar data are needed to estimate the contribution of plants to the functioning of food webs via the flow of energy and nutrients through the soil–plant‐nectar/pollen‐consumer pathway. Current knowledge on this topic is fragmented. This database represents the first compilation of data on the various food resources produced by 1612 plant species belonging to 755 genera and 133 families, including crop plants and wild plants, annuals and perennials, animal‐ and wind‐pollinated plants, and weeds and trees growing in different ecosystems under various environmental conditions. The data set consists of 103 parameters related to the traits of plant species and geographical and environmental factors, allowing for precise calculations of the amounts of nectar, pollen, and energy provided by plants and available to consumers in the considered flora or ecosystem on a daily basis throughout the year. These parameters, gathered by us and extracted from the available literature, describe pollen, nectar, and sugar production (where applicable, in mass, volume, and concentration units), honey yield, the timing and duration of flowering, flower longevity, number of plants and flowers per unit area, weather conditions (temperature and precipitation), geographical location, landscape, and syntaxonomy. The data were obtained from various, mostly European, pedoclimatic zones, and the majority of the data were available for plant species and communities present in Central Europe, especially in Poland, where research on floral resources has a long tradition. These data are representative of the whole continent and may be used as a reference for plant communities occurring on continents other than Europe since the database allows for the consideration of differences in the production of resources by a single plant species growing in different communities. This data set provides a unique opportunity to test hypotheses related to the functioning of food webs, nutrient cycling, plant ecology, and pollinator ecology and conservation. The data are released under a CC‐BY‐NC‐SA license, and this paper must be properly cited when using the database.
Article
Full-text available
Spring is an essential time for honey bee foraging in temperate climates. This is a period of increased brood rearing supporting colony growth and demands access to high-quality pollen and nectar resources. With the expansion of urban and agricultural landscapes, the availability of pollen and nectar producing flowers is declining in many areas. We aim to determine how patterns of spring pollen and nectar foraging differ between colonies surrounded by varying degrees of urban and agricultural intensity, as well as to assess the potential for nectar sampling to serve as a proxy for pollen collection. Thirteen apiaries in Central Ohio, along a gradient of urban and agricultural intensity, were monitored in spring of 2019 through the periodic collection of pollen and nectar samples and continuous colony weight monitoring. We found that spring honey bees in urban and agricultural areas gain comparable amounts of weight and use similar spring resources. Foraging was heavily focused on flowering trees and shrubs including Malus (apple), Salix (willow), and Prunus (cherry), until the beginning of clover bloom (Trifolium spp.). We also identified differences in pollen and nectar foraging within colonies, with nectar containing fewer species collected more evenly than matched pollen samples. These results demonstrate that honey bees in both agricultural and urban environments exhibit similar foraging patterns during the spring, and that plant species important for nectar collection are substantially different from plants important for pollen foraging, though limitations in nectar collection hinder our ability to draw definitive comparisons of pollen and nectar foraging in this region.
Article
This study aimed at investigating phenolamides and flavonoid glycosides in 20 types of monofloral bee pollen. The plant origins of pollen samples were determined by DNA barcoding, with the purities to over 70%. The 31 phenolamides and their 33 cis/trans isomers, and 25 flavonoid glycosides were identified; moreover, 19 phenolamides and 14 flavonoid glycosides as new-found compounds in bee pollen. All phenolics and flavonoids are present in the amidation or glycosylation form. The MS/MS cleavage modes of phenolamides and flavonoid glycosides were summarized. Isorhamnetin-3-O-gentiobioside presented the highest levels 23.61mg/g in apricot pollen. Phenolamides in 11 types of pollen constituted over 1% of the total weight, especially 3.9% in rose and 2.8% in pear pollen. Tri-p-coumaroyl spermidine and di-p-coumaroyl-caffeoyl spermidine respectively accounted for over 2.6% of the total weight in pear and rose pollen. The richness in phenolamides and flavonoid glycosides can offer bee pollen more bioactivities as functional foods.