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Brief Report Not peer-reviewed version
Towards Rigorous Diagnostics for
Vaccine Injury
Matthew Halma *
Posted Date: 12 July 2023
doi: 10.20944/preprints202307.0840.v1
Keywords: Vaccine adverse event; Covid-19; spike protein; diagnosis
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Brief Report
Towards Rigorous Diagnostics for Vaccine Injury
Mahew Halma
EbMC Squared CIC, Bath, United Kingdom, BA2 4BL
Abstract: Delineating the epidemic of vaccine injury from the coterminous condition long covid is a challenging
prospect, but one with many implications not just for treatment, but also has important legal considerations for
selements of vaccine injury. The shared etiological factor of the spike protein in both vaccine injury and long
covid make dierentiation dicult, and while treatment is largely similar between vaccine injury and long covid,
there are important distinctions. Furthermore, diagnostics are important for monitoring treatment progress and
assessing the extent of subclinical vaccine injury in population having received a covid-19 vaccine. The
development of rigorous diagnostics is an important step towards the recognition of both long covid and vaccine
injury, as those suering these conditions have faced immense challenges in having their conditions recognized,
treated, and compensated by insurance companies or national health services.
Introduction
Adverse events after vaccination have been far more common with Covid-19 vaccines than any
other licensed vaccine[1]. Not only are the rates of clinical conditions associated with Covid-19
vaccines high, but there is also extensive subclinical damage. Due to the pathological mechanisms of
the vaccine encoded spike protein, the potential for damage can exist at low levels for long periods
of time, and those having received a vaccine can be in a ‘sword of Damocles’ situation for years or
even decades. Frankly, there is a lot left unknown about the long-term eects of Covid-19 vaccines[2].
The extent of subclinical danger, as well as the increase in sudden and unexplained deaths
motivates the diagnosis of vaccine injury through biomarkers. One immediate biomarker that comes
to the fore is testing for the presence of the spike protein or its subunits in plasma[3], as it is a major
pathological agent driving vaccine injury, long covid, as well as acute covid-19 infection[4].
This conation has important legal implications for those seeking compensation after injury
following Covid-19 vaccination. Pathologists can assign causality to covid-19 vaccination (as opposed
to infection) by immunostaining for the nucleocapsid (N) protein in addition to the spike (S)
protein[5]. Since Covid-19 infection will express both N and S proteins, whereas vaccination only
expresses the S protein, the simultaneous presence of the S protein and absence of the N protein is
strong evidence for vaccine induced causation[5].
Furthermore, there are two important dierentiations between the spike protein induced by
vaccination and the spike protein from infection. First, the viral spike protein will change as the virus
mutates, whereas the vaccine spike protein only changes when the sequence is updated (as with the
bivalent booster). Secondly, the vaccine spike protein is locked into a prefusion conformation through
two proline mutations, and will adopt a more rigid conformation than the viral spike protein[6].
There are three important ways to dierentiate spike protein from viral infection from that of
the vaccine. The following factors can be used to dierentiate vaccine damage from viral damage
(Table 1).
Table 1. Basis of diagnostic dierence between vaccine damage and damage from SARS-CoV-2.
Vaccine Spike
Viral Spike
No N protein present
N protein present
Sequence identical to vaccine sequence
Sequence much les constrained, reflects currently
circulating variants
Locked into prefusion conformation
Conformationally flexible
Diagnostics
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contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting
from any ideas, methods, instructions, or products referred to in the content.
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 12 July 2023 doi:10.20944/preprints202307.0840.v1
© 2023 by the author(s). Distributed under a Creative Commons CC BY license.
2
General
In guiding treatment, there are multiple biomarkers that one can test with to gain insight into
the progression of the injury sustained from the vaccine. These are non-specic to vaccine injury and
are general biomarkers of cardiovascular risk. These include troponin, D-dimer and C-reactive
protein[3].
[4]. These biomarkers are specic to cardiac injury, and will not be able to determine disease
aetiology.
Troponin is a general biomarker associated with diagnosis of acute coronary syndromes[7,8], as
troponins are released into the blood following damage to cardiac muscle[9]. D-dimer is a biomarker
associated with the breakdown of brin clots by the brinolytic system [10]. As the test measures
breakdown of clots, a high measure can indicate a high level of clot burden, as well as a high degree
of breakdown[11], and this must be taken into consideration by the clinician.
C-reactive protein is an inammatory biomarker, and higher values are associated with
increased cardiovascular risk[12].
Biomarker
Upper limit of normal
Peak cardiac troponin (T)
14 ng/L [3]
Brain natriuretic
Peptide (BNP)
100pg/mL [3]
N-terminal prohormone of brain natriuretic peptide
(NT-proBNP)
450pg/mL [3]
C-reactive protein (CRP)
8mg/L [3]
D-dimer
(patient’s age in years x 10mcg/L) [13]
Specic
A recent paper by Yonker surveyed the biomarkers of vaccinated individuals, both with and
without post-vaccination myocarditis. The main dierentiator between the group with myocarditis
and those without was the persistence of full length spike protein, unbound by antibodies[3]. Given
that this is the sole gene encoded by most of the vaccines and has multiple documented pathological
mechanisms[4], it is a likely aetiological factor in post-vaccination syndrome.
Cases of blood thrombosis after vaccination typically occur within one month of receiving the
injection[14,15]. A test for spike protein contains two important quantities, the concentration of spike
protein, as well as the time since vaccination. While most often after injection spike protein
concentration drops o quickly after one week [16], persistence of high levels of spike protein for
months after injection has been documented in a subset of vaccinated individuals [17]. It is unclear
what the individual factors are aecting long-term spike protein levels; we propose a model for the
long term persistence of spike protein.
The rst factors are the variations in the initial dose of spike protein encoding mRNA, which can
vary due to storage, dilution and administration. Once the mRNA is in the body, the level of spike is
in competition between mRNA degradation and protein expression from the mRNA. We also
propose a third alternative between degradation and expression, that of conversion to a reservoir.
Reverse transcription into the genome is possible [18]. Additionally, a discovery of DNA
contamination in a broad swathe of mRNA vaccine vials[19], potentially opening the possibility of
but microbiota transfection through the mechanism of horizontal gene transfer [20].
While the half-life of RNA is well known, and endogenous mRNA has a half life of
approximately 10 hours [21], it is known that pseudouridinylated RNA is far more persistent[22,23],
and less is known about the degradation of the N1-methyl-psuedouridnylated RNA used in the
mRNA vaccines[2] and persistent spike protein appears to be the factor which dierentiates those
with post-vaccination myocarditis vs vaccinated people without myocarditis[3].
Considerations
Causation
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 12 July 2023 doi:10.20944/preprints202307.0840.v1
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There is an unprecedented wave of vaccine injury, in addition to any disease burden from long
Covid. The origins of Covid notwithstanding, establishing causation for those experiencing vaccine
injury is an important step both in allowing them to receive just compensation, as well as to establish
the true role of vaccination in the mortality and morbidity burdens. The laer is useful both for
informing regulatory policy going forward, as it is necessary for regulators and the public to know
the true risk prole of this class of intervention. Additionally, establishing causation is useful for legal
seings, including compensation for injured recipients as well as prosecution of any wrongdoing.
The extent of liability is important, as those seeking treatment often have few options, and lile
resources, owing to the often debilitating nature of their illness, and its lack of acknowledgement and
subsequent compensation by health systems[24]. Vaccine injury compensation schemes are
uncommon [25,26].
The experience of the vaccine injured has largely been one of gaslighting and being ignored, and
only now are their concerns being heard[24]. Still, treatment is limited, and limited resources exit for
injury compensation [27]. Treatment of long Covid is receiving some aention and research funds
[28], while treatment of vaccine injury is limited. For example, in the US clinical trials database
(clinicaltrials.gov, accessed July 11, 2023) there is currently one study to test treatment of Covid-19
vaccine injury; the study is not yet recruiting and was last updated May 24, 2022. Multiple studies
exist to treat long Covid, reviewed in [29]. No large university hospital or academic medical center
has published a treatment protocol for vaccine injury, and the current literature is scant [29].
Conclusion
While the situation of the vaccine injured presents a pessimistic view, the situation is improving.
Vaccine injury is increasingly being recognized, as a recent acknowledgement by German health
minister Karl Lauterbach exemplies [30]. Still, for those aected, it is a long road to recovery.
Diagnostics are a necessary part of the path towards health in those experiencing post-vaccination
syndrome and long covid. In some cases, the diagnostics are similar, but the potential also exists to
discriminate the two conditions with diagnostics, as well as by patient history.
Developing rigorous diagnostics is an important step towards gauging treatment progress and
informing the science of treating vaccine injury, as well as long covid. Diagnostic development
ensures that those aected receive the recognition and treatment they deserve, and ensures the
integrity of compensation claims, a and can inform legal action against regulators, pharmaceutical
manufacturers and public health ocials.
References
1. Kim, M.S.; Jung, S.Y.; Ahn, J.G.; Park, S.J.; Shoenfeld, Y.; Kronbichler, A.; Koyanagi, A.; Dragioti, E.; Tizaoui,
K.; Hong, S.H.; et al. Comparative Safety of MRNA COVID-19 Vaccines to Inuenza Vaccines: A
Pharmacovigilance Analysis Using WHO International Database. Journal of Medical Virology 2022, 94, 1085–
1095, doi:10.1002/jmv.27424.
2. Halma, M.T.J.; Rose, J.; Lawrie, T. The Novelty of MRNA Viral Vaccines and Potential Harms: A S coping
Review. J 2023, 6, 220–235, doi:10.3390/j6020017.
3. Yonker, L.M.; Swank, Z.; Bartsch, Y.C.; Burns, M.D.; Kane, A.; Boribong, B.P.; Davis, J.P.; Loiselle, M.;
Novak, T.; Senussi, Y.; et al. Circulating Spike Protein Detected in Post–COVID-19 MRNA Vaccine
Myocarditis. Circulation 2023, 147, 867–876, doi:10.1161/CIRCULATIONAHA.122.061025.
4. Theoharides, T.C.; Conti, P. Be Aware of SARS-CoV-2 Spike Protein: There Is More than Meets the Eye. J
Biol Regul Homeost Agents 2021, 35, 833–838, doi:10.23812/THEO_EDIT_3_21.
5. Mörz, M. A Case Report: Multifocal Necrotizing Encephalitis and Myocarditis after BNT162b2 MRNA
Vaccination against COVID-19. Vaccines 2022, 10, 1651, doi:10.3390/vaccines10101651.
6. Riley, T.P.; Chou, H.-T.; Hu, R.; Bzymek, K.P.; Correia, A.R.; Partin, A.C.; Li, D.; Gong, D.; Wang, Z.; Yu,
X.; et al. Enhancing the Prefusion Conformational Stability of SARS-CoV-2 Spike Protein Through
Structure-Guided Design. Frontiers in Immunology 2021, 12.
7. Mahajan, V.S.; Jarolim, P. How to Interpret Elevated Cardiac Troponin Levels. Circulation 2011, 124, 2350–
2354, doi:10.1161/CIRCULATIONAHA.111.023697.
8. Melanson, S.E.F.; Morrow, D.A.; Jarolim, P. Earlier Detection of Myocardial Injury in a Preliminary
Evaluation Using a New Troponin I Assay with Improved Sensitivity. Am J Clin Pathol 2007, 128, 282–286,
doi:10.1309/Q9W5HJTT24GQCXXX.
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 12 July 2023 doi:10.20944/preprints202307.0840.v1
4
9. Apple, F.S.; Sandoval, Y.; Jae, A.S.; Ordonez-Llanos, J.; IFCC Task Force on Clinical Applications of
Cardiac Bio-Markers Cardiac Troponin Assays: Guide to Understanding Analytical Characteristics and
Their Impact on Clinical Care. Clin Chem 2017, 63, 73–81, doi:10.1373/clinchem.2016.255109.
10. Thachil, J.; Lippi, G.; Favaloro, E.J. D-Dimer Testing: Laboratory Aspects and Current Issues. In Hemostasis
and Thrombosis: Methods and Protocols; Favaloro, E.J., Lippi, G., Eds.; Methods in Molecular Biology;
Springer: New York, NY, 2017; pp. 91–104 ISBN 978-1-4939-7196-1.
11. Linkins, L.-A.; Takach Lapner, S. Review of D-Dimer Testing: Good, Bad, and Ugly. International Journal of
Laboratory Hematology 2017, 39, 98–103, doi:10.1111/ijlh.12665.
12. Ridker, P.M. A Test in Context. Journal of the American College of Cardiology 2016, 67, 712–723,
doi:10.1016/j.jacc.2015.11.037.
13. Urban, K.; Kirley, K.; Stevermer, J.J. PURLs: It’s Time to Use an Age-Based Approach to D-Dimer. J Fam
Pract 2014, 63, 155–158.
14. Biloa, C.; Perrone, G.; Adelo, V.; Spatola, G.F.; Uzzo, M.L.; Argo, A.; Zerbo, S. COVID-19 Vaccine-Related
Thrombosis: A Systematic Review and Exploratory Analysis. Front Immunol 2021, 12, 729251,
doi:10.3389/mmu.2021.729251.
15. Mani, A.; Ojha, V. Thromboembolism after COVID-19 Vaccination: A Systematic Review of Such Events in
286 Patients. Annals of Vascular Surgery 2022, 84, 12-20.e1, doi:10.1016/j.avsg.2022.05.001.
16. Ogata, A.F.; Cheng, C.-A.; Desjardins, M.; Senussi, Y.; Sherman, A.C.; Powell, M.; Novack, L.; Von, S.; Li,
X.; Baden, L.R.; et al. Circulating Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
Vaccine Antigen Detected in the Plasma of MRNA-1273 Vaccine Recipients. Clinical Infectious Diseases 2022,
74, 715–718, doi:10.1093/cid/ciab465.
17. Bansal, S.; Perincheri, S.; Fleming, T.; Poulson, C.; Tiany, B.; Bremner, R.M.; Mohanakumar, T. Cuing
Edge: Circulating Exosomes with COVID Spike Protein Are Induced by BNT162b2 (Pzer–BioNTech)
Vaccination Prior to Development of Antibodies: A Novel Mechanism for Immune Activation by MRNA
Vaccines. The Journal of Immunology 2021, 207, 2405–2410, doi:10.4049/jimmunol.2100637.
18. Aldén, M.; Olofsson Falla, F.; Yang, D.; Barghouth, M.; Luan, C.; Rasmussen, M.; De Marinis, Y.
Intracellular Reverse Transcription of Pzer BioNTech COVID-19 MRNA Vaccine BNT162b2 In Vitro in
Human Liver Cell Line. Curr Issues Mol Biol 2022, 44, 1115–1126, doi:10.3390/cimb44030073.
19. McKernan, K.; Helbert, Y.; Kane, L.T.; McLaughlin, S. Sequencing of Bivalent Moderna and Pzer MRNA
Vaccines Reveals Nanogram to Microgram Quantities of Expression Vector DsDNA per Dose. OSF
Preprints. April 2023, 10.
20. Brito, I.L. Examining Horizontal Gene Transfer in Microbial Communities. Nat Rev Microbiol 2021, 19, 442–
453, doi:10.1038/s41579-021-00534-7.
21. Lugowski, A.; Nicholson, B.; Rissland, O.S. Determining MRNA Half-Lives on a Transcriptome-Wide
Scale. Methods 2018, 137, 90–98, doi:10.1016/j.ymeth.2017.12.006.
22. Karikó, K.; Muramatsu, H.; Welsh, F.A.; Ludwig, J.; Kato, H.; Akira, S.; Weissman, D. Incorporation of
Pseudouridine Into MRNA Yields Superior Nonimmunogenic Vector With Increased Translational
Capacity and Biological Stability. Molecular Therapy 2008, 16, 1833–1840, doi:10.1038/mt.2008.200.
23. Leppek, K.; Byeon, G.W.; Kladwang, W.; Wayment-Steele, H.K.; Kerr, C.H.; Xu, A.F.; Kim, D.S.; Topkar,
V.V.; Choe, C.; Rothschild, D.; et al. Combinatorial Optimization of MRNA Structure, Stability, and
Translation for RNA-Based Therapeutics. Nat Commun 2022, 13, 1536, doi:10.1038/s41467-022-28776-w.
24. Fairgrieve, D.; Rizzi, M.; Kirchhelle, C.; Halabi, S.; Howells, G.; Wileb, N. No-Fault Compensation
Schemes for COVID-19 Vaccines: Best Practice Hallmarks. Public Health Rev 2023, 44, 1605973,
doi:10.3389/phrs.2023.1605973.
25. Fairgrieve, D.; Borghei, J.-S.; Dahan, S.; Goldberg, R.; Halabi, S.; Holm, S.; Howells, G.; Kirchelle, C.;
Pillay, A.; Rajneri, E. Comparing No-Fault Compensation Systems for Vaccine Injury. Tul. J. Int’l & Comp.
L. 2023, 31, 75.
26. Crum, T.; Mooney, K.; Tiwari, B.R. Current Situation of Vaccine Injury Compensation Program and a
Future Perspective in Light of COVID-19 and Emerging Viral Diseases. F1000Res 2021, 10, 652,
doi:10.12688/f1000research.51160.2.
27. Demasi, M. Covid-19: Is the US Compensation Scheme for Vaccine Injuries Fit for Purpose? BMJ 2022, 377,
o919, doi:10.1136/bmj.o919.
28. Long Covid Is a ‘National Crisis.’ So Why Are Grants Taking so Long to Get? Available online:
hps://www.science.org/content/article/long-covid-national-crisis-so-why-are-grants-taking-so-long-get
(accessed on 11 July 2023).
29. Halma, M.T.J.; Plothe, C.; Marik, P.; Lawrie, T.A. Strategies for the Management of Spike Protein-Related
Pathology. Microorganisms 2023, 11, 1308, doi:10.3390/microorganisms11051308.
30. Post-Vac Syndrome — the Forgoen COVID Victims – DW – 03/21/2023 Available online:
hps://www.dw.com/en/post-vac-syndrome-the-forgoen-covid-victims/a-65051748 (accessed on 11 July
2023).
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Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those
of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s)
disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or
products referred to in the content.
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 12 July 2023 doi:10.20944/preprints202307.0840.v1