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Orchids of Russia and Crimea: herbarium collections provide sufficient data to recover the distributional changes over time

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  • Komarov Botanical Institute of the Russia Academy of Sciences, Saint-Petersburg, Russia
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... Apart from their original taxonomic and inventory purpose, they can provide important information on plant functional traits, phenology, morphology, physical environment, associated species, and population genetics (Davis et al., 2015;Greve et al., 2016;Lang et al., 2019;Lehnert et al., 2023;Nualart et al., 2017;Park et al., 2019). However, one of their greatest potential may lie in tracking changes in distribution over space and time, particularly at the regional level (Efimov, 2023;Di Musciano et al., 2020;Greve et al., 2016;Huber, 1994;Yang et al., 2022), and in subsequent extinction risk assessment and IUCN Red List classification (Nic Lughadha et al., 2018). Taken together, the data that can be derived from herbarium specimens can provide crucial insights for the conservation of species (Nualart et al., 2017). ...
... Taken together, the data that can be derived from herbarium specimens can provide crucial insights for the conservation of species (Nualart et al., 2017). Although the use of herbarium specimens has its limitations -many of them are incorrectly determined (Rosche et al., 2024), do not contain a collection date, or the location is too imprecisely described -there is still a lot of material that can be used, after appropriate selection (Efimov, 2023), to set conservation priorities, improve decisions and restoration measures regarding rare and endangered species, and thus enhance conservation success (Nualart et al., 2017). ...
... Instead, each specimen was assigned to a 5 km x 5 km grid cell based on its general location. This method was successfully applied by Efimov (2023), where such grid cells were used to illustrate the reduction in the distribution area of various species. However, the size of the grid cells was adjusted to the size of the study area, as suggested by the author. ...
... It is the rarest and perhaps the least known orchid of the Caucasian region (Molnár et al., 2021), as well as one of the rarest species of the genus Himantoglossum. There was a positive distributional change observed for H. formosum in Russia in the middle of the XX century, but after that it had neutral dynamics (Efimov, 2023).The estimated IUCN Red List category for H. formosum in Russia is EN B2ab(iii) (Murtazaliev, in preparation). Nothing was previously known on its pollination ecology. ...
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A male of Eucera (Synhalonia) tricincta Erichson, 1835 was recorded as the first known flower visitor and pollinator of Himantoglossum formosum (Steven) K. Koch. The bee specimen was carrying four pairs of the orchid pollinaria, three of which were with partially spent massulae. About a half (48.6%) of all flowers of H. formosum in the locality under study were observed to be visited by pollinators and 22.9% were pollinated. It is comparable to other species of Himantoglossum Spreng. except H. caprinum (M. Bieb.) Spreng., which has significantly lower pollination rate. Himantoglossum formosum is highly threatened in Russia, being estimated as endangered taxon, according to the IUCN categories and criteria. However, the rarity of the species is apparently not related to its pollination ecology.
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BP) and the Last Glacial Maximum (ca. 22.000 yr. BP). Future distribution modeling was carried out basing on different climatic scenarios, according to IPCC AR5: RCP8.5, RCP2.6 and RCP6.0. Species distribution from the section Xerobia mostly occupied the territory of Central Asia (See Fig. 1). Few species, such as Oxytropis grandiflora (Pall.) DC. and O. leptophylla (Pall.) DC., were mostly found in the western part of Xerobia section distribution on the territory of Zabaykal’skiy region of Russia, Eastern province of Mongolia and Inner Mongolia province of China. The most part of Xerobia species have isolated distribution and often occupy specific habitats. In such case, using SDM with only bioclimatic variables for local endemic species is pointless. So, we chose species Oxytropis ampullata (Pall.) Pers. (See Fig. 2) with Central Asian distribution and O. grandiflora with Manchuro-Dahurian distribution for modeling (See Fig. 3A). The selected species differ in their ecology: O. ampullata is a mountainous species, whereas most habitats for O. grandiflora are river valleys and mid-mountainous regions. Our analysis showed that ENVIREM variables provide more correct modeling results than BIOCLIM variables (See Fig. 2). Predictive maps on the basis of BIOCLIM variables showed wide potential distribution for O. ampullata, which does not correspond well to the species ecology. The main habitats for this species are such mountainous regions as the Khangai mountains, the Russian and the Mongolian Altai mountains, the Dzhungarian mountains, and the Tarbagatai ridge. Additionally, modeling showed potential distribution for the species in the Selenga river valley. Modern distribution of O. grandiflora was studied quite well; suitable habitats with new localities for the species can be found in the Khentii mountains (See Fig. 3A). The determinants for O. ampullata are mean annual temperature, isothermality and potential evapotranspiration (PET) of the driest and coldest quarter (See Table 1). PET parameters in the driest and the coldest time of the year have the key meaning because in arid conditions plants receive the main portion of moisture in the colder period when the evaporation is not intense, also it is important to conserve the moisture during the dry season. Distribution of O. grandiflora is limited by temperature and precipitation seasonality, temperature annual range, PET seasonality, and PET of the driest quarter (See Table 1). Determinants for the species with Central-Asian distribution O. ampullata are connected with temperature variables, whereas for Manchuro-Daurian species O. grandiflora precipitation matters (See Table 1 and Fig. 3A). The key factors for modern distribution of the studied Xerobia species are mean monthly potential evapotranspiration of the driest quarter, continentality index and climatic moisture index (See Fig. 3B). All these variables were determinants for the mid-Holocene and the Last Glacial Maximum (See Table 2 and Fig. 4), which might give evidence of relatively stable environmental conditions in the studied region. Central Asia has not been severely affected by glaciation as more northern latitudes and climate conditions on that territory were relatively stable during a long period. Modeling for the past climate showed a wider distribution for Xerobia species in the north-west during the Last Glacial Maximum and future shrinking during the Mid-Holocene till modern time (See Fig. 4). The north-eastern territories, such as Zabaykal’skiy region of Russia and, partially, the central part of Siberia, are characterized by a wider distribution under modern climate conditions. Species habitats of that territory are mostly confined with mountains. It is consistent with previous studies that described Southern Siberia as one of the centers of speciation for the genus Oxytropis. This region has now high Oxytropis species richness with a great number of endemics. Predictive maps for different climate scenarios reveal insignificant changes in distribution of the section Xerobia, even for the maximum climate warming (RCP8.5 scenario) (See Fig.5). Under predicted climate change, potential habitats in the southwest and in the north-east of Xerobia distribution, as well as a slight shrinking in the south-east can be observed in the future.
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We examined the occurrence of Dactylorhiza majalis, the most abundant terrestrial orchid species growing in rapidly disappearing wet meadows, at 50 historical sites for 3 years. We aimed to find the most frequent reasons for its recent extinction at many sites. We found that the main reasons for its extinction were absence of mowing, intensive fertilisation and washouts of fertilisers from fields nearby. At extant sites, we studied its biometric characteristics and composition of surrounding vegetation, to determine factors affecting its persistence. Bad performance of persisting populations of this species was associated with prevalence of grasses, low May temperatures and absence of mowing. This confirms, at metapopulation level, what has previously been observed at the level of individual populations. We suggest that the system of agricultural subsidies in the country should change towards more sensitive allocation of funds to those farmers, who will adopt the appropriate management of wet meadows and their surroundings.
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The article reports the discovery of Epipactis leptochila (Godfery) Godfery in the north-east of the Belgorod Region. The species is found for the first time in the central part of the European Russia. Its distribution in the region in question and distinctions from the closely related species Epipactis helleborine (L.) Crantz are discussed. The species is suggested to be more widespread in Russia than previously assumed.
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Background and aims Orchids are known to be particularly sensitive to environmental changes due to their narrow ranges of secondary successional habitats. Lack of data at the community level limits our ability to evaluate how traits of different species influence their responses to habitat change. Here, we used a diachronic survey of Mediterranean orchid communities in Corsica to examine this question. Methods Using data from two field surveys conducted 27 years apart (1982–84 and 2009–11) at the same 45 sites in Corsica, we evaluated the impact of increase in woody plant cover (WPC) on (i) the richness and composition and (ii) the local extinction/colonization dynamics of orchids. We applied a Bayesian multispecies site-occupancy model to each of the 36 orchid species recorded at these sites to estimate the detection probability of each species, enabling us to account for under-detection in estimating their dynamics. Key Results Between 1982 and 2011, WPC changed at 82·3 % of sites (increasing at 75·6 %, decreasing at 6·7 %). Despite marked changes in composition of orchid communities at the local scale, no significant change was detected in species richness at the regional scale. Canopy closure affected the probability of new colonization of sites, but had no significant influence on the probability of local extinction. However, the abundance of shade-intolerant species declined more sharply than that of shade-requiring species. Among orchid species, the detection probability was significantly and positively correlated with population density and plant height. Conclusions This study reveals contrasted dynamics of orchid communities between local and regional scales in Corsica. Although high turnover in communities was found at the local scale, regional species richness was maintained despite major land-use changes. Conserving landscape mosaics could provide locally suitable habitats for orchids of different ecologies to maintain diversity at larger spatial scales.
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A revision of Platanthera of Asia is presented, which recognises 78 species. Each species description is supplemented by extensive synonymy and a distribution map; all species are illustrated by line drawings. In the general chapters, special importance is given to delineating the generic limit of Platanthera, which is continuously changing. An improved taxonomic system of Platanthera on a global scale is elaborated in connection with existing phylogenetic studies and discussed in detail. The genus is subdivided into five subgenera, two of which are further divided into sections. The possible main routes of transcontinental migrations during the evolution of the genus are speculated upon in a section on ‘biogeographic considerations’. One new species (P. miniangustata), 12 new subgenera and sections, five new combinations at specific and intraspecific ranks and 20 new neo- and lectotypes are included.
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A new approach to reveal the dynamics of taxa on incompletely investigated territories was developed. The decline/expansion rate of orchids in the North Western part of European Russia (Leningrad, Novgorod and Pskov Regions, an area approx. 195,000 km2) was estimated using this method. The method is based on comparison of numbers of grid cells where a certain species was recorded in various time intervals using specially designed software. More than 9000 records were used, however the territory remained insufficiently and unevenly studied both spatially and over time. The study revealed a statistically significant (p < 0.01) decrease for Coeloglossum viride, Corallorhiza trifida, Cypripedium calceolus, Gymnadenia conopsea, Herminium monorchis, Malaxis monophyllos, Neotinea ustulata and Orchis militaris and a significant increase for Dactylorhiza baltica, D. fuchsii and Platanthera chlorantha. In several taxa, the trend was changed over the time. Of them, Gymnadenia conopsea displayed significant decline only since the middle of XX century, and Orchis militaris and Epipactis atrorubens decreased significantly only in the end of XIX and the beginning of XX century. The reasons for these patterns of dynamics were discussed. Parallels between the dynamics of orchids and land use in different periods of time in Russia are provided.
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Natural-history collections in museums contain data critical to decisions in biodiversity conservation. Collectively, these specimen-based data describe the distributions of known taxa in time and space. As the most comprehensive, reliable source of knowledge for most described species, these records are potentially available to answer a wide range of conservation and research questions. Nevertheless, these data have shortcomings, notably geographic gaps, resulting mainly from the ad hoc nature of collecting effort. This problem has been frequently cited but rarely addressed in a systematic manner. We have developed a methodology to evaluate museum collection data, in particular the reliability of distributional data for narrow-range taxa. We included only those taxa for which there were an appropriate number of records, expert verification of identifications, and acceptable locality accuracy. First, we compared the available data for the taxon of interest to the “background data,” comprised of records for those organisms likely to be captured by the same methods or by the same collectors as the taxon of interest. The “adequacy”of background sampling effort was assessed through calculation of statistics describing the separation, density, and clustering of points, and through generation of a sampling density contour surface. Geographical information systems (GIS) technology was then used to model predicted distributions of species based on abiotic (e.g., climatic and geological) data. The robustness of these predicted distributions can be tested iteratively or by bootstrapping. Together, these methods provide an objective means to assess the likelihood of the distributions obtained from museum collection records representing true distributions. Potentially, they could be used to evaluate any point data to be collated in species maps, biodiversity assessment, or similar applications requiring distributional information.
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Interpretation of large-scale faunal and floral survey data is often frustrated by the bias caused by variation in recording intensity. Using distribution data for Odonata and Hepaticae from the Biological Records Centre, a technique for correcting this bias is described The method is used to locate species-rich hotspots for the two taxa and comparisons are made with uncorrected data.
Article
National databases were interrogated to analyse and compare proportional alterations in the distribution ranges of orchid species between two surveys in the UK (surveys completed in 1969 and 1999) and in Estonia (surveys completed in 1970 and 2004). Nearly every species declined between the surveys in both countries, and two species may have become extinct in the UK. Mean decline in distribution range for 49 species in the UK was 50% (range 14–100%), and 23 species declined by over 50%. The mean decline for 33 orchid species in Estonia was 25% (range 0–62%), and three species declined by over 50%. These results corroborate serious range declines recently reported for orchids in other regions of Europe (the Netherlands and Flanders, Belgium). In contrast with these other regions, we found that species associated with calcareous grassland and woodland habitats had suffered greater mean contractions in range than species of wet grassland habitats. Greater decline was recorded for species found on drier soils, and for species characteristic of open habitats. In addition, greater decline was found in species with short inflorescences, and in species that were short-lived, and clonal. Our results suggest that levels of decline shown both by groups of species associated with specific habitat types, and by particular species of orchid, depend strongly on local policies and specific conservation action, and indicate the habitat types on which conservation efforts may need to be concentrated in the future. The results suggest that grazing and mowing of competing vegetation, and avoidance of substrate disturbance, will produce the greatest rewards for the most vulnerable species.
Article
This paper explores potential biases due to recording effort in the species richness (number of vascular plant species) recorded in grid-mapping projects. In this study, we review 80 regional and national grid Central European Basic Area (CEBA) mapping projects on the vascular plant flora of Central Europe. The measures of recording effort used were the duration of the mapping project, resolution of the mapping grid and number of botanists involved. Furthermore, several environmental and geographic factors associated with the variation in species richness were used as covariables: the number of phytosociological units in the Map of Potential Natural Vegetation of Europe, altitudinal range, annual precipitation, mean January and June temperatures and geographical location of the study areas. The effects of individual factors on species richness were compared by multiple regression and hierarchical partitioning. Both methods indicated a bias in observed species richness due to recording effort. Multiple regression indicated a significant role of duration of study, and hierarchical partitioning revealed significant effects of duration, number of botanists and used resolution. Of the variation in the total number of species recorded, 8% was attributed to the duration of mapping, 9% to the used resolution, and 7% to the number of botanists involved in mapping. However, this bias was scale-dependent. Although the sampling effect can be neglected on a broad scale, on a finer scale a significant amount of the variation in plant species richness can be ascribed to recording effort. This indicates the need for a standard approach in mapping and analysing patterns of species richness.
Article
I. Species are likely to be most sensitive to climate change at the geographic limits of their distribution. The behaviour of such populations may therefore be a predictor of the response of the species to global change. 2. The northern limit of the Lizard Orchid, Himantoglossum hircinum, occurs in England, where 16 populations are currently known. British records over the past 100 years are particularly accurate for this species and it was one of the first for which changes in distribution were linked to an amelioration of climate (Good 1936). 3. Early records were checked to confirm the rise in population number in the early part of the century. Analysis of more recent data showed that this was followed by a sharp decline and numbers have only been rising again over the last decade. The range expanded with the earlier increase in population number, but did not contract as populations were lost. 4. Data collected between 1977 and 1998 in the largest population allowed flowering probability and seed production to be correlated with rainfall during the growing season. Analysis of the resulting model showed that both observed rises in population number followed periods during which the seasons for vegetative growth had been wet. 5. Populations have become both larger and more persistent due to an increased interest in conservation. 6. Changes in the abundance of H. hircinum are likely to depend on other factors, including patterns of human activity, as well as on climate change.
Article
Botanical recording data are often used to assess changes in the frequencies of plant species over time, but are subject to marked variations in recording activity. We compare and evaluate some general methods that can be used to detect changes in species’ frequencies taking into account the recording variations. Models for 15 species that have been studied in detail previously were compared using the numbers of individual records, sites, hectads, or vice-counties at different time scales (year, decade, moving averages, and pre-/post- specific dates), with or without correction for recording variation. The best methods had a correction for the amount of recording over time, summarized records by decade or moving average, and used an extrapolation between first and last records for sites or hectads. Increasing the geographical and temporal scales can decrease the influence of recording variations, but leads to a loss of sensitivity and under-estimates the true extent of change. The choice between sites and hectads will depend on the detail of the records available; cruder data sets should use the latter. © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society, 2006, 152, 279–301.
Article
This article presents an ecological interpretation of the changes in the vascular flora of the Netherlands during the 20th century, paying attention to survey bias and the impact of environmental and nature conservation policies from 1970 onwards. In the course of the 20th century, some 10 million records of 1500 vascular plant species were sampled on a 1 km grid scale. These data were divided into three periods: 1902–1950, 1975–1988 and 1988–2000, and for each period and species total national presence were calculated. To interpret the ecological significance species were aggregated into 83 ‘ecological groups’ using a classification based on five ecological site factors. The changes of these ecological groups were statistically analysed by redundancy analysis. The principal change observed throughout the whole of the 20th century is a marked decline in vegetation types of nutrient-poor sites, particularly those on neutral soils, and at the same time a large increase in those of (moderately) nutrient-rich sites. The second most important change was a decline in saline vegetation types especially between the first and second period. Other important changes were a decline in grassland vegetation types and an increase in tall herbaceous and woodland vegetation types. For certain pioneer vegetation types on nutrient-poor, neutral soils recovery was observed, probably as a consequence of nature restoration projects started in the 1980s. Despite measures to reduce environmental emissions, eutrophication remains a major threat to the flora of the Netherlands.
Article
Continental-scale assessments of 21st century global impacts of climate change on biodiversity have forecasted range contractions for many species. These coarse resolution studies are, however, of limited relevance for projecting risks to biodiversity in mountain systems, where pronounced microclimatic variation could allow species to persist locally, and are ill-suited for assessment of species-specific threat in particular regions. Here, we assess the impacts of climate change on 2632 plant species across all major European mountain ranges, using high-resolution (ca. 100 m) species samples and data expressing four future climate scenarios. Projected habitat loss is greater for species distributed at higher elevations; depending on the climate scenario, we find 36–55% of alpine species, 31–51% of subalpine species and 19–46% of montane species lose more than 80% of their suitable habitat by 2070–2100. While our high-resolution analyses consistently indicate marked levels of threat to cold-adapted mountain florae across Europe, they also reveal unequal distribution of this threat across the various mountain ranges. Impacts on florae from regions projected to undergo increased warming accompanied by decreased precipitation, such as the Pyrenees and the Eastern Austrian Alps, will likely be greater than on florae in regions where the increase in temperature is less pronounced and rainfall increases concomitantly, such as in the Norwegian Scandes and the Scottish Highlands. This suggests that change in precipitation, not only warming, plays an important role in determining the potential impacts of climate change on vegetation.
Article
Methods for inferring threat from scientific collections were tested using museum records of marsupials and monotremes in south-west Western Australia. A modification of Solow's equation is presented that accounts for changes in collection effort. A runs test, sensitive to runs of zeroes anywhere in the collection record, was only marginally useful for identifying declining and threatened species. The two forms of Solow's equation, a trend analysis based on rank correlation, and a partial trend analysis to account for changes in collection effort, appeared the most promising of the methods tested. The results demonstrated that the use of these methods to infer threat may be useful when expert opinion is limited or not available. In conjunction with other relevant information, it appears that the methods can help to prioritise species on the basis of relative levels of threat.
Article
The large losses of heathland area since the end of the 18th century can be expected to have resulted in the decline or even extinction of many characteristic heathland species. Historical data on plant species distribution patterns can provide valuable information in this context. Therefore, the aims of this research are to study how the loss of heathland area has changed the presence of heathland and forest plant species in north-western Belgium using historical plant distribution data, and to test whether the heathland flora shows an extinction debt. Furthermore, plant traits determining extinction sensitivity are investigated.Our results revealed that, despite the dramatic reduction of heathland area (more than 99% of heathland was destroyed over a 230-year period), the loss of heathland species is relatively limited (11%) and is comparable with that of forest species (11%). Heathland species that have a long-term persistent seed bank or can propagate vegetatively are least sensitive to extinction. For forest species, on the other hand, growth form is the key determinant for extinction sensitivity. Long-lived woody species have a greater chance of persisting.The relatively low extinction numbers probably represent an extinction debt and the full effects of habitat loss may not have been fully manifested yet. Consequently, future extinctions are expected to occur unless environmental conditions are improved. Therefore, heathland restoration and prevention of further heathland area losses is required.
Article
Terrestrial orchids typically produce numerous small seeds that contain very small nutrient reserves. The seeds are structurally adapted for wind dispersal but little is known about their fate after dispersal. Some studies of seed viability in situ indicate survival for up to two years in temperate orchid species. Seeds stored in the laboratory may last much longer. We investigated seed viability of seven North American orchid species with seed packets buried in a range of soil and wood substrates within their natural habitats. In Goodyera pubescens most seeds germinated within one year. Four other species continued to germinate sparsely during the observation period, but after almost seven years many seeds were still viable. In one species, Liparis liliifolia, seeds that had been in situ for four years had germination rates as high as 68% when sown in vitro with a compatible fungus. The remaining two species did not germinate during the observation period but the seeds were judged to be intact and tested positively for viability after four years in the ground. These observations are interpreted as different species-specific strategies for in situ germination and their seed bank potential is discussed.
Article
The BSBI Monitoring Scheme was a sample hectad (10 km × 10 km square) survey of Britain and Ireland during 1987 and 1988 set up to assess changes in the vascular plant flora since 1960. To assess change, records were compared against data collected for the Atlas of the British flora (1930–1960) for England and Scotland. At least 24% of the flora was found to have changed significantly in England, and at least 12% in Scotland. Tables showing species which have changed in frequency and selected maps are presented. The major trends suggest that plants of grasslands, heathlands, aquatic and swamp habitats and arable weeds have declined, whilst introduced species have increased.
Article
Since about J600, 486 animal species have been recorded extinct. This represents about 0.04% of all animal species so far described. In the same period, 600 plant species are known to have disappeared, about 0.25% of the total. These figures are much smaller than those of the Permian/ Triassic and Cretaceous/Tertiary mass extinctions. One might therefore conclude that at present life on earth is at comparatively little risk of extinction. However, there is a growing body of data to show that the converse is true.
Article
We are now entering a time of immense environmental upheaval in which, increasingly, experts are required to provide conservation assessments. Quantitative assessment of trends in species' range and abundance is costly, requiring extensive field studies over a long period of time. Unfortunately, many species are only known through a few "chance" sightings or a handful of specimens, and therefore extinction may be even harder to ascertain. Several methods have been proposed for estimating the probability of extinction. However comparison within and between species is difficult because of variations in sighting rates. We applied a probabilistic method that incorporates sighting rate to the sighting record of Vietnamese slipper orchids (Paphiopedilum). The method generates a probability that another sighting will occur given the previous sighting rate and the time since last observation. This allows greater comparability between species discovered at different times. Its predictions were more highly correlated with the World Conservation Union criteria than previous methods. Trends in data collection and the political climate of a country, which affects access to material, are important potential sources of variation that affect sighting rates. A lack of understanding of the process by which data are generated makes inferring extinction from sighting records difficult because extinction status depends on how the sighting rate varies. However such methods allow rapid conservation prioritization of taxa that are poorly known and would otherwise go unassessed.
The dynamics of Orchids of NW European Russia
  • Efimov
The genus Liparis (Orchidaceae) in Russia
  • Efimov
Findings of Himantoglossum robertianum in South Baden
  • Achstetter
Soil seed bank dynamics of terrestrial orchids
  • Batty
Plants and lichens of Russia and neighboring countries: open online galleries and plant identification guide
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On the record of Cephalanthera damasonium (Orchidaceae) in Bryansk Region
  • Semenishchenkov
Krasnyye knigi: spiski okhranyayamykh vidov rasteniy i lishaynikov
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