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Molecular phylogeny reveals distinct evolutionary lineages of the banded krait, Bungarusfasciatus (Squamata, Elapidae) in Asia

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Abstract and Figures

The banded krait, Bungarusfasciatus is a widespread elapid snake, likely to comprise several distinct species in different geographic regions of Asia. Therefore, based on molecular phylogenetics and comparative morphology data, we present an overview of the systematic composition of the species to delimit potential biogeographic boundaries. Our phylogenetic analyses, based on four mitochondrial genes, reveal the existence of at least three evolutionary lineages within B.fasciatus, corresponding to Indo-Myanmar, Sundaic and eastern Asian lineages. We are convinced that there are at least three taxonomic entities within the nomen B.fasciatus and restrict the distribution of B.fasciatus sensu stricto to the Indo-Myanmar region. We also provide additional natural history data of the taxon from eastern India. Finally, we advocate further studies to establish the degree of reproductive isolation among these diverging evolutionary lineages and to reassess the systematic status of this species complex especially the Sundaic and eastern Asian lineages.
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Molecular phylogeny reveals
distinct evolutionary lineages
of the banded krait, Bungarus
fasciatus (Squamata, Elapidae)
in Asia
Lal Biakzuala
1, Hmar T. Lalremsanga
1*, Vishal Santra
2,3, Arindam Dhara
2, Molla T. Ahmed
2,
Ziniya B. Mallick
2, Sourish Kuttalam
2,4, A. A. Thasun Amarasinghe
5* & Anita Malhotra
4*
The banded krait, Bungarus fasciatus is a widespread elapid snake, likely to comprise several
distinct species in dierent geographic regions of Asia. Therefore, based on molecular phylogenetics
and comparative morphology data, we present an overview of the systematic composition of the
species to delimit potential biogeographic boundaries. Our phylogenetic analyses, based on four
mitochondrial genes, reveal the existence of at least three evolutionary lineages within B. fasciatus,
corresponding to Indo-Myanmar, Sundaic and eastern Asian lineages. We are convinced that there
are at least three taxonomic entities within the nomen B. fasciatus and restrict the distribution of
B. fasciatus sensu stricto to the Indo-Myanmar region. We also provide additional natural history
data of the taxon from eastern India. Finally, we advocate further studies to establish the degree of
reproductive isolation among these diverging evolutionary lineages and to reassess the systematic
status of this species complex especially the Sundaic and eastern Asian lineages.
Aside from its taxonomical importance, recognition and ascertainment of independently evolving lineages is
crucial for understanding the evolutionary processes aecting the origin of population structure and species
diversication1. Because of the growing availability of genetic methods for species delineation2, numerous studies
have uncovered cryptic diversity within the widespread vertebrate species including in tropical and sub-tropical
Asia; for instance, among shes35, amphibians68, birds911, and mammals1214. Moreover, recent phylogeographi-
cal and molecular studies have rened our understanding of cryptic speciation across biogeographic boundaries
or within biogeographic regions15,16, and even propounded the suitability of reptiles in particular as biogeographic
indicators17,18. Recent studies focussing on widespread reptilian species have also established the existence of
previously unnoticed cryptic diversity, including in lizards1922 and snakes2330.
Bungarus Daudin, 1803, collectively known as kraits, are venomous elapid snakes which inhabit the Asian
subcontinent31. Most of the nominal Bungarus species are poorly understood. However, recent study on the
diversication and evolution of elapid snakes have highlighted that the diversication of kraits occurred around
30–25 million years ago, and are close relatives of other Australasian elapid genera and sea snakes32. Bungarus
fasciatus (Schneider, 1801), commonly known as the banded krait, is a nocturnal and conspicuous krait that
grows up to 2,250mm in total length and is morphologically characterized by its yellow (or cream) and black
banded body33. It occurs in various habitat types such as primary forests, agricultural lands as well as domestic
gardens up to 2,300m above sea level33,34. So far, B. fasciatus has been reported from eastern India, Nepal, Bhutan,
Bangladesh, and Myanmar, extending southwards through ailand, Malaysia and Singapore into the Indone-
sian archipelago, and eastwards through Laos, Vietnam and China35,36. e species is currently listed as a Least
OPEN
1Developmental Biology and Herpetology Laboratory, Department of Zoology, Mizoram University, Aizawl,
Mizoram 796004, India. 2Society for Nature Conservation, Research and Community Engagement, Nalikul,
Hooghly, West Bengal 712407, India. 3Captive and Field Herpetology, 13 Hirfron, Anglesey LL65 1YU,Wales,
UK. 4Molecular Ecology and Evolution at Bangor, School of Natural Sciences, College of Environmental Sciences
andEngineering,EnvironmentCentreWales,BangorUniversity,BangorLL572UW,UK.5Department of Biology,
FacultyofMathematicsandNaturalSciences,UniversitasIndonesia,KampusUI,Depok16424,Indonesia. *email:
htlrsa@yahoo.co.in; thasun.amarasinghe@ui.ac.id; a.malhotra@bangor.ac.uk
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Concern (LC) species in the IUCN Red List35. Despite its wide distribution, studies have so far been conducted
mainly on its potential medical signicance37, ecological importance38,39, or characterization of venom4045.
Although there are no studies specically on the molecular systematics of this species, several previous
studies have highlighted intra-specic or geographical variability based on genetic barcoding4648. Accurate
species delimitation is crucial in view of the variability in snake venom composition49 and its potential eects
on antivenom ecacy50. Most of the existing taxonomic and systematic literature on Bungarus have apparently
overlooked the intraspecic diversity of B. fasciatus5158. erefore, in this study we ll in the inherent knowledge
gaps by providing comparative morphological evidence and molecular phylogeny based on four mitochondrial
genes (COI, CYTB, ND4 and 16S rRNA) based on sequences from east and northeast India, Indochina, and the
Greater Sunda islands. Moreover, given the minimal knowledge on the natural history, reproductive behaviour,
and ecology, which are important for assessing the population status of the species34,59, we also provide natural
history data for the populations of B. fasciatus from India.
Materials and methods
Sampling. For this study, we collected both morphological and genetic data for Bungarus fasciatus, which we
compared to publicly available or unpublished data. We collected morphological data for the B. fasciatus popula-
tion represented by 15 specimens from northeastern India between the years 2007–2022. We surveyed during
the day and night, collected individuals by hand, and euthanized them with MS-222 following the standard
procedure60 in compliance with the American Veterinary Medical Association (AMVA) guidelines and approved
by the Institutional Animal Ethics Committee (IAEC) (Permission No. MZU-IAEC/2018/12). We then xed
the specimens in 10% buered formalin solution overnight, prior to their storage in 70% ethanol. We preserved
liver tissue samples for DNA analysis in 95% ethanol, which were stored at −20°C. Vouchered specimens were
deposited at the Departmental Museum of Zoology, Mizoram University (MZMU). Additional blood samples
from the caudal sinus were collected from the West Bengal (WB) populations and preserved in EDTA-Tris
buer; these specimens were subsequently released aer taking necessary scale counts. Our study is reported in
accordance with the ARRIVE 2.0 guidelines (Animal Research: Reporting of InVivo Experiments)61. e dis-
tribution map was prepared using QGIS v3.16.2 and the digital elevation model (DEM) was downloaded from
Open Topography (https:// opent opogr aphy. org/).
DNA extraction, amplication and molecular analyses. Liver tissue or blood was used to extract
genomic DNA using DNeasy (Qiagen™) blood and tissue kits following the manufacturer’s instructions. Frag-
ments of four mitochondrial (mt) markers (16S, COI, ND4 and CYTB) were amplied in a 20 μL reaction
volume, containing 1X DreamTaq PCR Buer, 2.5mM MgCl2, 0.25mM dNTPs, 0.2pM of each gene primer
pair, approximately 3.0ng of extracted DNA, and 1 U of Taq polymerase. A negative control with reagent grade
water instead of DNA template was always included. Target mt gene sequences were amplied using the thermal
proles and primers given in Supplementary TableS1. PCR products were checked using gel electrophoresis on
a 1.5% agarose gel containing ethidium bromide. e PCR products were cleaned using ermoFisher ExoSAP-
IT PCR product cleanup reagent and subsequently sequenced using the Sanger dideoxy method using the ABI
3730xl DNA Analyzer at Barcode BioSciences, Bangalore, India. e generated partial gene sequences were
deposited on the NCBI repository (GenBank accession numbers are given in Supplementary TableS2). In this
study, a total of one COI, six 16S, six ND4, and nine CYTB sequences were generated and were combined with
published sequences of B. fasciatus obtained from the NCBI database; database sequences of B. caeruleus, B.
candidus, B. ceylonicus, B. sindanus, and B. multicinctus were used as outgroups. e four mt gene alignments
were concatenated in SequenceMatrix62. Using the CYTB dataset, the uncorrected p-distance was estimated
in MEGA X using the complete deletion option for the treatment of gaps/missing data63. Prior to the Bayesian
analysis, PartitionFinder v2.164 was utilized to search the best partitioning schemes and the best tting model
through Bayesian Information Criterion (BIC) (Supplementary TableS3). Bayesian phylogeny (BI) was recon-
structed using the selected models in Mr.Bayes v3.2.565. e MCMC was run with four chains (one cold and
three hot chains) for 20 million generations and sampled every 5000 generations. Tracer v1.766 was used to check
the convergence of likelihood and the burn-in cut-o. e diagnosis of topological convergence and MCMC
and mixing of chains was done in R-Studio67 using the package, R We ere Yet (RWTY)68. e BI tree was
further illustrated using web-based tree annotator iTOL soware v569. e Maximum Likelihood (ML) tree
was reconstructed in IQ-TREE70 using 10,000 Ultrafast Bootstrap (UFB)71 based on the dataset partitioned by
codon positions with the most appropriate model selected for each partition using ModelFinder72 integrated
in IQ-TREE70. e CYTB dataset, partitioned by codon, was utilized for performing BI and ML based Poisson
Tree Processes (PTP) species delineation analyses73 implemented in iTaxoTools v0.174. For the input le of PTP,
a non-ultrametric tree was produced in IQ-TREE70 with 10,000 UFB replicates71 using the models selected for
CYTB partitions. Only the CYTB dataset was selected for the species delimitation analysis as it contains more
samples from dierent geographical regions compared to the other three genes.
Morphology. We obtained morphometric (mensural and meristic) data for species comparisons, and distri-
bution data from examined specimens (Java (JV), Mizoram (MZ) and WB) and published literature54,7577. We
measured the following characters to the nearest millimetre with a Mitutoyo digital caliper and Leica M50 (Leica
Microsystems Inc.) dissecting microscopes: eye diameter (ED, horizontal diameter of orbit); eye–nostril length
(EN, distance between anteriormost point of eye and middle of nostril); snout length (ES, distance between
anteriormost point of eye and snout); head length (HL, distance between posterior edge of mandible and tip
of snout); head width (HW, maximum width of head); snout–vent length (SVL, measured from tip of snout to
anterior margin of vent); tail length (TaL, measured from anterior margin of vent to tail tip). Meristic characters
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were taken as follows: supralabials (SL) and infralabials (IL) (rst labial scale to last labial scale bordering gape);
dorsal scale rows (DSR, counted around the body from one side of ventrals to the other in three positions, on one
head length behind neck, at midbody and at one head length prior to cloacal plate); when counting the number
of ventral scales (Ve), we scored values according to the method described by Dowling78. We counted subcaudal
scales (Sc) from the rst subcaudal scale meeting its opposite to the scale before the tip of the tail, the terminal
scute is excluded when counting. Sex of the specimens was identied by examining everted hemipenes or by
ventral tail dissection. We evaluated the relative size of the nuchal band, the number of the black cross bands
of each individual. e number of cross bands on the body (BB) were counted from the rst band posterior to
the nuchal band on the nape up to the level of cloaca, the count on the tail from the level of cloaca to the tip of
tail (BT), and number of vertebral scales covering the nuchal band (NBW). In addition, the number of vertebral
scales covering the rst cross band is also considered a reliable character for adult individuals. Values for bilateral
head characters are given in le/right order. We followed Keogh79 for hemipenial terminology, and the extent of
inverted hemipenis in terms of percentage of subcaudal scales (HpR).
Statistical analyses. e morphological information was obtained from three dierent populations exam-
ined by us: recent and long-term preserved specimens from JV in Indonesia (n = 15), live specimens from WB
(n = 8) and live, recent and long-term preserved specimens from MZ (n = 15) states in India. Before performing
any further analyses, the meristic data were standardized to zero mean and unit standard deviation to avoid
potential bias due to dierence in the range of measurement among variables; for mensural data, the combina-
tion of characters with the highest R-squared score obtained through linear regression was selected as the best
log transformation model to make linear relationship with body size. Since we do not have gender information
from the WB population, the meristics of the remaining populations (JV and MZ) were rst tested using sepa-
rate one-way analysis of variance (ANOVA) using sex and locality as factors along with Levene’s test80 to test the
homogeneity of variances; if the assumption of homoscedascity was violated, Brown-Forsythe test81 was utilised
as an alternative approach. For mensurals (TaL, HL, and HW), a two-way analysis of covariance (ANCOVA)
was carried out with snout-vent length (SVL) as a covariate. e meristic variables identied with no sexual
dimorphism were utilised for multiple comparison among the three populations by pooling sexes using one-
way ANOVA using locality as a factor, and post-hoc was performed with applying Bonferroni correction. In
addition, a potential observer dierence was screened by repeating measurements on the same specimens and
then tested using one-way ANCOVA. e variable characters among lineages identied through the univariate
analyses were utilized further for Principal Component Analysis (PCA) to visualize the clustering of the dierent
populations. e correlation matrices between all pairs of the morphological variables, variance explained by
each eigenvalue as well as the correlations of each variable to the rst two components are explored. Specimens
with missing characters were excluded in the multivariate analysis. Statistical analyses were performed using the
SPSS v.25.0 statistical package (Armonk, NY: IBM Corp.).
Results
Phylogenetic relationship. e rst 25% of trees from the BI analysis were discarded as burn-in, and
the standard deviation of split frequencies were < 0.005 when analyses terminated. e graphs created using
RWTY in R-Studio also indicated satisfactory topological mixing. e inferred concatenated trees from BI and
ML analyses were congruent with each other. e BI tree, created using Mr.Bayes v3.2.565 and further illustrated
using iTOL soware v569, is show in Fig.1, with Bayesian posterior probabilities from the BI analysis and UFB
values from the ML analysis. e CYTB dataset consisted of a total of 1047 aligned characters, with 97 variable
sites (excluding outgroups).
Molecular phylogenetic based on the concatenated aligned matrix for four mitochondrial genes (16S, COI,
ND4, and CYTB; 2850bp in length), recovered a monophyletic clade consisting of three lineages within Asia.
Both the phylogenetic analyses and the single-locus-based PTP species delineation approach signicantly support
these three distinct clades which we describe as, (i) B. fasciatus from the Sundaic region, especially from Great
Sunda islands which we describe as the Sundaic lineage (Clade I; Fig.1); (ii) B. fasciatus from Indo-Myanmar
(Clade II; Fig.1), and (iii) B. fasciatus from mainland Sundaland including southern China, here described as
east Asian lineage (Clade III; Fig.1).
e overall mean intra-specic divergence across all lineages of B. fasciatus (uncorrected p-distance) was
3.5%. Furthermore, 0.4% intra-clade genetic divergence was observed within Clade I (between two locations in
JV), 0.0%–1.3% within Clade II (between India and Myanmar), and 0.0%–6.5% within Clade III (among China,
Vietnam, ailand, and an unknown locality). e mean inter-clade genetic divergence is 5.0% between Clade
I (Sundaic) and Clade II (Indo-Myanmar), 5.3% between Clade II (Indo-Myanmar) and III (east Asia); 5.7%
between Clade I (Sundaic) and III (east Asia). Combined B. fasciatus (Clades I + II + III) shows the least inter-
specic genetic divergence (19.5%–19.8%) with B. candidus, while inter-specic distances among other species
(B. sindanus, B. caeruleus, B. candidus, B. ceylonicus, and B. multicinctus) range from 3.0% (between B. candidus
and B. multicinctus) to 19.0% (between these two species and B. ceylonicus) (also see Supplementary TableS4).
Morphometric analysis. In this study, despite limited sampling, morphometric analyses were performed
to identify taxonomically informative characters among the examined populations (WB, MZ and JV). Only the
mensurals such as TaL (p < 0.001), HW (p < 0.05) and HL (p < 0.05) showed signicantly dimorphic characters
between males and females within JV and MZ populations. For meristic characters, inter-population dier-
ences were statistically signicant (p < 0.001) for Ve (MZ vs. JV), BB, BT, and NBW (the latter three characters
are tested among three populations), all of which showed a higher number in the MZ population; for mensural
characters, inter-population dierences were also statistically signicant for TaL (p < 0.05) and HL (p < 0.001)
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Figure1. Bayesian inference (BI) phylogenetic tree based on concatenated mitochondrial 16S, COI, ND4 and
CYTB genes; lineage partitions recovered from CYTB-based PTP analyses are presented besides the BI tree
(only the CYTB dataset was utilized for PTP analyses because it contains more representative samples from the
three clades compared to the other genes). Values at each node represent Bayesian posterior probabilities (PP)
and Ultrafast Bootstrap (UFB) values from the Maximum Likelihood (ML) analysis (PP/UFB). Abbreviations of
country and state/province names are: ID Indonesia, JW/J Java, MM Myanmar, AY Ayeyarwady, IN India, WB
West Bengal, MZ Mizoram, AS Assam, VN Vietnam, VC Vinh Phuc, CN China, GZ Guizhou, GX Guangxi, GD
Guangdong, YN Yunnan, TH ailand.
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(Table1). Post-hoc tests conducted among the three populations for BB, BT, and NBW showed that, except for
BT between MZ and WB populations (p > 0.05), signicant dierences are seen for all characters: BB (p < 0.001
across all the populations), NBW (p < 0.001 in MZ vs. WB, and JV vs. WB; p < 0.05 in MZ vs. JV), and BT
(p < 0.001 in MZ vs. JV; p < 0.01 in JV vs. WB). Comparison was also made based on the identied variable
meristic characters among the three populations using a PCA. e correlation matrix showed weak correlations
between pairs of variables (r < 0.7); thus, all variables were retained for this analysis. e rst two components
accounted for 84% of the total variation of the data, with PC1, PC2 and PC3 representing 64%, 20% and 11%,
respectively. e loadings of all variables are high on the rst axis, while only Ve loads considerably highly on
the second axis, with Ve having less eect on PC1 than PC2 (Supplementary TableS5). e representation of the
rst two components depicts substantial separation of the Javanese and the Indian populations on the rst axis
(PC1), and marginal separation of the WB and MZ populations on the second axis (PC2) (Fig.2). Given that the
samples from the three populations (WB, MZ and JV) were examined by dierent recorders, we also tested for
potential recorder bias between the East Indian and northeast Indian specimens; however, no signicant dier-
ences were seen aer re-examination of the same specimens (p > 0.05).
Systematics. We present diagnostic morphological, morphometric, and meristic data taken for Bungarus
fasciatus Clade II from east and northeast India (Supplementary TableS6). e examined specimens of B. fas-
ciatus from India are morphologically distinguishable from the Sundaic population (see Table2). Based on the
present study, we postulate the existence of at least three dierent taxonomic entities within the nomen B. fascia-
tus, and also conrm that populations in eastern India (e.g. Odisha, WB, etc.) and northeastern India (e.g. MZ,
Assam, etc.) are conspecic. Based on the original description of Pseudoboa fasciata, minimum three specimens
were available or referable to Schneider82; hence syntypes. Among these syntypes two specimens (ZMB 2771,
2772) have been deposited at ZMB from the collection of Marcus Bloch (de Bauer83). In addition, one of syn-
types was depicted in Russell84 (page 3, plate 3) as the “Bungarum Pamah, an adult from “Mansoor Cottah” (now
Gobalpur, Odisha (Orissa), India), specimen is now lost (de Bauer85). So far, the only existing name-bearing
type specimens are the two syntypes in the collection of Berlin Zoological Museum (ZMB 2771–72) originat-
ing from “Indien” (= India) de ZMB catalogue36 a detailed taxonomic revision will be published elsewhere
(Amarasinghe etal. in preparation). We arm that the specimen used by Russell84 for his illustration is the same
specimen (syntype) housed in the ZMB, thus we adhere with the type locality given by Russell84. erefore, here
we postulate the Indo-Myanmar populations (Clade II) as B. fasciatus sensu stricto, while considering the popu-
Table 1. Evaluation on the meristic and mensural characters measured for 38 Bungarus fasciatus individuals
from Java (JV), Mizoram (MZ), and West Bengal (WB), including mean, standard deviation, minimum and
maximum values. Standardized meristic data were utilised for the following tests: Ve of JV and MZ was tested
for inter-population dierence and sexual dimorphism using separate one-way ANOVA with locality and
sex as the factors, respectively; Sc of JV and MZ was tested using two-way ANCOVA using sex and locality
as factors; BB and NBW were tested for inter-population dierence (among the three populations) and
sexual dimorphism (within JV and MZ) using separate one-way ANOVA with locality and sex as the factors,
respectively; since BT violated the assumption of homoscedascity, it was tested using the alternative Brown-
Forsythe test and was indicated by octothorp (#). For mensurals, two-way ANCOVA was performed for the log
transformed TaL, HL, and HW values from JV and MZ by using the log transformed SVL as a covariate, with
locality and sex as the factors. e characters with statistically signicant variations at the alpha level of 0.05
are shown in boldface. e characters tested for inter-population dierence across the three populations are
indicated by asterisk (*). Signicant values are in bold.
Characters Sex
Java (n = 15) Mizoram (n = 15) West Bengal (n = 8)
unsexed
Sexual dimorphism Inter-population dierenceMean ± SD Range Mean ± SD Range Mean ± SD Range
Ve Male 205.44 ± 3.43 199–210 226 ± 2.10 222–228 217.63 ± 3.12 212–222 F1,28 = 1.35 p = 0.256 F1,28 = 469.80 p < 0.001
Female 206.83 ± 1.94 205–210 229.11 ± 2.15 224–231
Sc Male 34.43 ± 0.98 33–36 35.83 ± 0.75 35–37 34.63 ± 1.49 31–36 F1,25 = 2.44 p = 0.131 F1,25 = 1.30 p = 0.266
Female 31.17 ± 1.60 30–34 33.75 ± 1.28 32–36
BB Male 22.67 ± 1.12 21–25 24.33 ± 1.97 22–27 28.38 ± 1.73 26–31 F1,28 = 0.44 p = 0.511 F2,35 = 39.78* p < 0.001*
Female 21.83 ± 1.17 20–23 25.00 ± 1.58 23–27
BT Male 3.22 ± 0.67 2–4 5.00 ± 0.00 55.25 ± 1.09 4–7 F1,21 = 0.12#p = 0.728#F2,12 = 17.86*#p < 0.001*#
Female 3.17 ± 0.41 3–4 4.22 ± 0.44 4–5
NBW Male 19.00 ± 1.00 18–20 18.20 ± 0.45 18–19 15.63 ± 1.11 14–17 F1,27 = 0.40 p = 0.533 F2,34 = 22.16* p < 0.001*
Female 19.00 ± 0.63 18–20 17.67 ± 1.73 15–20
TaL Male 120.74 ± 20.01 90–145 101 ± 38.92 47–133 F1,24 = 18.96 p < 0.001 F1,24 = 6.01 p = 0.022
Female 107.86 ± 23.43 85–145 97.88 ± 15.56 76–119
HL Male 35.06 ± 4.97 27.10–40.90 21.60 ± 5.71 12.80–26.60 F1,24 = 4.37 p = 0.047 F1,24 = 79.38 p < 0.001
Female 34.81 ± 6.19 25.90–44.50 21.03 ± 5.03 15.74–29.68
HW Male 20.88 ± 4.03 13.80–25.70 17.79 ± 5.10 12.18–22.46 F1,25 = 4.33 p = 0.048 F1,25 = 0.97 p = 0.334
Female 20.70 ± 3.13 16.40–26.20 16.12 ± 4.30 10.40–22.76
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lations from Sundaic region, especially from Greater Sunda Islands (Clade I) and mainland Sundaland including
southern China (Clade III) as B. fasciatus sensu lato. Consequently, we redescribe the B. fasciatus sensu stricto,
including hemipenis morphology, based on MZ population, from where a large number of samples are available.
Bungarus fasciatus (Schneider, 1801) sensu stricto. (Tables1, 2; Figs.3A–E, 4A,B, 5).
[English: Banded krait; Bengali: Sankhamuti/Sankhini/Chamorkasa; Mizo: Chawnglei/Tiangsir].
Pseudoboa fasciata Schneider, 1801.
Bungarus annularis Daudin, 1803.
Bungarus fasciatus bifasciatus Mell, 1929.
Bungarus fasciatus insularis Mell, 1930.
Examined materials. Males (n = 7; MZMU 933, 1314, 1320, 1417, 1421, 1883, 2935) and Females (n = 8;
MZMU 1319, 1321, 1550, 1562, 1561, 1548, 1572, 2481) collected from MZ, northeast India.
Species redescription. Based on the overall examined MZ materials with combined sexes, adults SVL
444.0–1220.0mm, tail length 47.0–133.0mm; head elongate (HL 2.0–3.5% of SVL), wide (HW 71.8–92.1%
of HL), slightly attened, indistinct from neck; snout elongate (ES 22.8–40.1% of HL), moderate, at in dorsal
view, rounded in lateral prole, rather depressed. Rostral shield large, at, slightly visible from above, pointed
posteriorly; interorbital width broad; internasals subtriangular; nostrils rather large, nasals large, divided, and
elongated, in anterior contact with rostral, and internasal and prefrontal dorsally, 1st and 2nd supralabial ven-
trally, preocular posteriorly; no loreal; prefrontal rather large, broader than long, and pentagonal; frontal large,
hexagonal, short, slightly longer than width; supraoculars narrow, elongate, subrectangular, posteriorly wider;
parietals large, elongate, buttery wing-like in shape, bordered by supraoculars, frontal, upper postocular ante-
riorly, anterior and upper posterior temporals, and ve or six nuchal scales posteriorly; one preocular, vertically
slightly elongated, hexagonal, in contact with prefrontal and posterior nasal anteriorly, supraocular dorsally, and
Figure2. Ordination of Bungarus fasciatus populations from Mizoram (MZ), West Bengal (WB) and Java (JV)
along the rst two principal components based on a PCA of the characters Ve, BB, BT, and NBW. Total variance
associated with PC1 and PC2 are 64% and 20%, respectively.
Table 2. Some comparative morphological data of Bungarus fasciatus sensu lato in each biogeographic region,
based on this study and published data.
Character
Population/clade
Indo-Myanmar (n = 23) East Asia (n = 11) Greater Sunda (n = 15)
Ventrals 200–234 217–237 199–210
Subcaudals 23–39 33–41 30–36
Number of dorsal bands on body 22–31 19–21 20–25
Number of dorsal bands on tail 4–7 ? 2–4
Nuchal band covered by vertebral scales 14–20 ? 18–20
Background body color Yellow/cream Yellow Yellow/cream
Source Smith75
is study Yang & Rao76;
Chen etal.54; Leviton etal.77 is study
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2nd and 3rd supralabials ventrally; eye moderate (ED 10.7–21.7% of HL), round, about half of the size of snout
length (ED 41.7–69.9% of ES), pupil rounded; two postoculars, subequal or upper one larger, pentagonal, upper
postocular in broad contact with supraocular, parietal and anterior temporal, lower postocular in contact with
anterior temporal and 5th supralabials; temporals 1 + 2, large, slightly elongated, subrectangular or pentagonal;
anterior temporal larger than posterior temporal, in contact with parietal and both postoculars dorsally, and
5th and 6th supralabial ventrally; lower posterior temporal in contact with 6th and 7th supralabials ventrally.
Supralabials seven (on both sides), 5th–7th largest in size; 1st supralabial in contact with rostral anteriorly, nasals
dorsally, 2nd with posterior nasal and preocular dorsally, 3rd with preocular and orbit dorsally, 4th with orbit;
Figure3. Bungarus fasciatus sensu stricto (MZMU1883) from Northeast India: (a) dorsal view of full body, (b)
ventral view of full body, (c) dorsal view of head, (d) lateral view of the le side of head, and (e) ventral view of
head.
Figure4. Live individuals of Bungarus fasciatus sensu stricto (a) from Keitum village, Mizoram, India
(MZMU1421), and (b) a juvenile with creamish dorsum coloration from Saikhawthlir village, Mizoram, India.
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5th with orbit, lower postocular, and anterior temporal dorsally, and 6th with anterior and lower posterior tem-
porals dorsally, 7th with lower posterior temporal dorsally and scales of the neck posteriorly.
Mental large, triangular, blunt posteriorly; rst infralabial pair larger than mental plate and in broad contact
with each other, in contact with anterior chin shields posteriorly; seven infralabials, 1st–4th in contact with ante-
rior chin shields, 4th infralabial largest in size in contact with both anterior and posterior chin shields; 4th–7th
infralabials in contact with gular scales; two larger anterior chin shields, and two slightly smaller posterior chin
shields; anterior chin shields in broad contact between them; posterior chin shields bordered posteriorly by
seven gular scales.
Body robust, elongate and subcylindrical; dorsal scales in 15 midbody rows, all smooth and pointed poste-
riorly; 222–228 ventrals in males and 224–231 in females; cloacal plate divided. Tail comparatively short, TaL
8.9–10.4% of total length in males and 13.5–17.1% of total length in males, robust and thick; subcaudals 35–37
in males and 32–36 in females, divided.
Coloration. In preservative, dorsum and venter white or yellow; 22–27 black cross bands along the body and
4 or 6 on the tail; cross bands complete laterally, and reaching the ventrals except the nuchal band; the bands
on the tail distinct; the nuchal band on the nape anteriorly inverted V-shaped covering 15–20 vertebral scales;
nuchal band starts from mid frontal; snout, anterior head, and lateral head black making remaining the white
dorsal color an inverted V-shaped marking; rst black band on the body covering 6 or 7 vertebral scales; inter-
band width covers with 3–5 vertebral scales; lower parts of the supralabials white; ventral head white until the
rst black band; tail tip black dorsally, white ventrally.
In life (Fig.4A), same color as in preservative, but the white body color may vary from white, cream, pale
yellow to bright yellow. One juvenile with cream and black body bands was encountered in Saikhawthlir, MZ
(Fig.4B), but the snake escaped before recording morphological data.
Variation. Except the anomalous specimen (MZMU1321) which had three postoculars on le and two on
right, and temporals 1 + 2 on the le and 2 + 2 on the right, all other meristic and morphometric characters
obtained so far did not show any signicant variation between the examined populations, and also correspond
to the conventional taxonomical characters provided in previously published literature77,86,87.
Hemipenis. Based on MZMU2935, the organ is single and subcylindrical, relatively short, robust, and capi-
tate; inverted hemipenis extends to 4th–7th subcaudal level (i.e. 11.1–20% from the total number of Sc); sulcus
spermaticus bifurcate below the crotch, shallow and centripetal; apical lobe less evident with only slight apical
aring; calyculate organ with a complex ornamentation of retiform ridges, papillate ounces, and spines; spines
on the upper basal areas enlarged and decreasing the size towards the proximal portion; apical region sharply
separated from the basal portion by a well-dened demarcation, so the apex is free and the apical part of the
hemipenis is richly capitate (Fig.5).
Distribution. Within India, B. fasciatus has been reported from Uttar Pradesh (Gorakhpur, de Masson88;
also see Anwar89 and Das etal.90) in the north and central Maharashtra in the west9193, extending across Telan-
gana (Hyderabad, de Kinnear94, Andhra Pradesh95, Chhattisgarh96,97, Jharkhand (Koderma, de Smith86; also
see Husain98), Bihar99, Odisha (Mahanadi valley, de Wall99; also see Boruah etal.100), and northern part of WB101
to northeastern India, including Arunachal Pradesh102,103, Assam99,104,105, Meghalaya106, MZ107,108, Tripura109,
Figure5. Sulcal (le) and asulcal (right) views of the right hemipenis of Bungarus fasciatus sensu stricto
(MZMU2935) from Mizoram, India.
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Manipur110 and Nagaland111. A few unveried records are available from Madhya Pradesh36, Uttarakhand35,and
southern peninsular India in Tamil Nadu, Karnataka and Kerala98.
Here we provide additional distributional records for B. fasciatus sensu stricto based on 44 new localities from
MZ, and two from WB, India (Supplementary TableS7). e lowest elevation among these new records is 4m
a.s.l. at Chitrasali in Hooghly District, WB and the highest is 1426m a.s.l. at Champhai Jailveng in Champhai
District, MZ. Based on the previous distribution of the species, the elevation range was between 40 and 2300m
a.s.l.33,34. Moreover, an estimated distribution range of the species was plotted (Fig.6) following WHO’s range
estimation for B. fasciatus112.
Natural history. Although B. fasciatus is a common species, details on the ecology, habitat, population, and
breeding are still sparse and further studies are needed. erefore, here we provide some natural history data
based on two clutches of eggs encountered from two localities in WB State, India:
(i) On 16th May 2020, at ca. 20:00h, from Chitrasali village, Hooghly, the snake was encountered on the bank
of a pond adjacent to a house in the middle of a village. e female was found coiling around a clutch of 19 eggs.
e breeding site was located inside a naturally occurring burrow at the base of a dead tree with decayed roots.
e burrow was on the bank ca. 6 feet from the pond. e pond had a gentle slope and was surrounded by plenti-
ful vegetation. On the day of the egg collection, the recorded ambient temperature at the natural breeding site was
28–38°C with average humidity of 78%. e eggs were relocated and incubated in a dedicated herpetoculture
room at 27.6°C using 3cm thick vermiculite bedding in a perforated box. On 10th June at 20:18h, the rst egg
slitswere observed, and hatching was completed on 18th June at 05:45h. e uctuating room temperature and
Figure6. Map showing the distribution range of Bungarus fasciatus sensu lato, based on the latest species map
provided by the World Health Organization (2022); the coloration corresponds to the three distinct evolutionary
lineages recovered in the phylogenetic analyses. e type locality of Bungarus fasciatus sensu stricto is indicated
by a black star. Localities of specimens used in the morphological analyses are indicated by black lled diamonds
(WB), circles (MZ), and triangles (JV). Abbreviations for countries are: IN India, NP Nepal, BT Bhutan, BD
Bangladesh, LK Sri Lanka, CN China, MM Myanmar, LA Laos, TH ailand, VN Vietnam, KH Cambodia, MY
Malaysia, BN Brunei Darussalam, ID Indonesia (KA Kalimantan, SM Sumatra, JW Java).
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average humidity from the start of hatching until hatching was completed were 26–35°C and 81.1%, respectively.
Notably, hatchlings crawled out from the pipped eggs on the 12th, 13th, and 14th June. Upon investigation, we
found that a total of six eggs failed to hatch, out of which three eggs were unfertilized, two contained partially
developed embryos showing deformities, and one egg had a fully developed embryo, possibly unable to cut
through the eggshell. On 18th June, we recorded the biometric data of the 13 hatchlings (5 females with aver-
age SVL 322.2mm, TaL 32.4mm, and body weight 21.2g; 8 males with average SVL 318.6mm, TaL 36.5, body
weight 19.9g), and were subsequently released close to where the eggs were collected.
(ii) On 05th May 2021 at 12:30pm, from a construction site at Ankuni village, Hooghly. A clutch of eight
eggs were uncovered under a pile of old bricks at the base of a dead tree with lots of burrows. e breeding site
was located on the bank of a pond, and the entire rubble pile was covered in vegetation. However, in this case,
the female snake was not found near the eggs, and it is possible that the excavation work might have scared the
female away. e eggs were relocated and incubated in the same herpetoculture room using 3cm thick ver-
miculite bedding in a perforated box. e room temperature recorded on 5th May uctuated between 24 and
33°C, with a relative humidity of 65%. Egg slits were seen on 6th June at ca. 22:00h. On 8th June at ca. 08:00h,
hatching was completed and all of the juveniles had emerged from the eggs. From the egg relocation until the
completed hatching (6th–8th June), the temperature and humidity uctuated between 24 and 39°C and 65–75%,
respectively. On 8th June, the biometric data of the eight hatchlings were taken (3 females with average SVL
333.3mm, TaL 38.7mm, and body weight 21.3g; 5 males with average SVL 351.0mm, TaL 43.2, body weight
21.4g), and they were also released close to the site from which the eggs had been collected.
Discussion
Bungarus fasciatus sensu stricto. Evidence from this study, based on morphology and molecular data,
denes three distinct clades of B. fasciatus with non-overlapping distribution clusters. e high genetic diver-
gence among lineages also suggests distinct species-level groups within B. fasciatus as currently conceived. Our
morphometric data analysis also provides evidence of their morphological distinctiveness between Clade I and
II. Moreover, the lineage from east Asia is basal to the other two lineages but, if these clades were to be accepted
as full species, the name-bearing lineage is Clade II. us, according to our newly presented evidence, and partly
according to Russell84, the distribution range of Bungarus fasciatus sensu stricto (Indo-Myanmar clade) com-
prises east and northeast India extending towards Myanmar. (Figs.1, 6).
Systematic challenges. In this study, we elucidate the presence of three independent lineages within B.
fasciatus, which is crucial for future nomenclatural revision. In the CYTB gene, while negligible intra-clade
genetic divergence was observed within Clade I (0.4%; between two locations in JV) and Clade II (0.0–1.3%;
Myanmar, east and northeast India), a wide range of intra-clade genetic divergence (00.0–6.5%) was evident
within Clade III (China, Vietnam, ailand). Consequently, we speculate that there might still be cryptic diver-
sity within the east Asian lineage (Clade III). Moreover, for robust delimitation of the B. fasciatus complex, it is
necessary to establish whether these lineages have undergone some degree of extrinsic or intrinsic reproductive
isolation to be evolving separately113. For instance, due to the high evolutionary rate of hemipenial traits com-
pared to the other morphological traits114,115, the organ has commonly been used to provide a picture of sexual
barrier even among cryptic species116118.
Although it has been previously stressed that delimiting the taxonomic status of geographically diversied
populations of venomous snakes alone cannot necessarily predict patterns of venom variation, it can play a
pivotal role in overcoming the consequential variability of venoms119121. Fry etal.120 further indicated that the
medical importance of B. fasciatus has been overestimated. Moreover, the possible existence of undiscovered
cryptic species accompanied by more venom diversity with uncharacterized components had been pointed out122.
Siqueira-Silva etal.123 observed that more productive environments favour more complex venom, with more
toxins in similar proportions. Based on the verbal autopsy we have conducted so far within MZ, there are three
cases of fatal envenomation potentially from the bite of banded krait. erefore, here we highlight the importance
of analyzing the venom compositions in dierent populations in each biogeographically isolated clade.
Further work. e combination of multivariate morphometric analysis and mitochondrial gene-based
phylogeography has been applied successfully for species delineation24,124,125 as well as for testing species
boundaries126. However, nuclear genes provide an independent test of species boundaries127 as they are capable
of measuring the extent of gene ow, and for this reason, recent work has increasingly used a combination of
nuclear and mitochondrial genes for phylogeographic analyses and species delineation128. Consequently, we
believe that the potentially species-level diversity across dierent B. fasciatus populations depicted in this study
cannot be overlooked, and a thorough comprehension of B. fasciatus systematics is still a fundamental challenge.
Data availability
e generated partial gene sequences were deposited on the NCBI repository (GenBank accession numbers are
given in Supplementary TableS2).
Received: 18 August 2022; Accepted: 16 January 2023
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Acknowledgements
We thank the Chief Wildlife Warden of Environment, Forests and Climate change Department, Government of
Mizoram for providing collection permits (No.A.33011/2/99-CWLW/22 and No.B.19060/5/2020-CWLW/20-26).
We also thank the Directorate of Forests, Wildlife Wing, Government of West Bengal for continued support
to carry out our research and conservation activities. is work is supported by DST-SERB, New Delhi (DST
No: EMR/2016/002391), DBT, New Delhi (DBT-NER/AAB/64/2017), National Mission for Himalayan Stud-
ies (NMHS), Uttarakhand (GBPNI/NMHS-2017/MG-22/566), DRDO, New Delhi (DGTM/DFTM/GIA/19-
20/0422), and DST-SERB, New Delhi (DST No: EEQ/2021/000243). AM would like to acknowledge EU Marie
Curie Action PIRSES-GA-2013-612131 (the BITES project); the Bangor University ESRC Impact Acceleration
Account, for funding; and Ashok Mallik for his assistance in this work. HTL is grateful to the International Her-
petological Symposium (IHS), USA for the award grant. LB is also thankful for the small grant he received from
e Ruord Foundation, UK (grant number 36737-1). LB and HTL would like to thank Mathipi Vabeiryureilai,
Fanai Malsawmdawngliana, Lal Muansanga, Lalengzuala Tochhawng, Ht. Decemson, Gospel Zothanmawia
Hmar, Vanlal Siammawii, H. Laltlanchhuaha; VS would like to thank Biswajit Das, Lakshmi Santra, Aritra
Dhara, Pallab Das, Ayan Koley, Rakesh Koley, Rajkumar Chakraborty, Amal Kr Santra, Ananta Katwal, Ishan
Santra, Shrabani Santra for their assistance in this study. AATA thanks the Ministry of Environment and Forestry
(KLHK) and e Directorate General of Conservation of Natural Resources and Ecosystems (KSDAE) of the
Republic of Indonesia for granting research permits; C. Rahmadi, A. Riyanto, A. Hamidy, Syaripudin, and W.
Trilaksano (MZB) for their support and facilitating the in-house study of specimens under their care. We are
deeply thankful to Patrick David for the insightful taxonomical comments in the dra version of the manuscript.
Author contributions
L.B.: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Soware, Visualization,
Writing—original dra. H.T.L.: Conceptualization, Data curation, Funding acquisition, Investigation, Method-
ology, Project administration, Validation, Visualization, Writing—original dra, Resources, Supervision. V.S.:
Investigation, Resources, Writing—review & editing. A.A.T.A.: Data curation, Formal analysis, Soware, Valida-
tion, Visualization, Investigation, Writing—review & editing. A.D.: Investigation, Resources. M.T.A.: Investiga-
tion, Resources. Z.B.M.: Investigation, Resources. S.K.: Investigation, Soware, Writing—review & editing. A.M.:
Formal analysis, Validation, Writing—review & editing.
Competing interests
e authors declare no competing interests.
Additional information
Supplementary Information e online version contains supplementary material available at https:// doi. org/
10. 1038/ s41598- 023- 28241-8.
Correspondence and requests for materials should be addressed to H.T.L., A.A.T.A.orA.M.
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... However, recent data from molecular phylogenetics and comparative morphology has indicated that three distinct taxonomic entities (clades) may exist with distinct Indo-Myanmar, Sundaic and East Asian Sundaland lineages (including Southern China) (Fig. 1). As a result, the distribution of B. fasciatus, sensu stricto, may be restricted to only the Indo-Myanmar region (Biakzuala et al., 2023). In India, the snake has been reported from various states such as Assam, Arunachal Pradesh, Meghalaya, Manipur, Mizoram, Nagaland, Tripura, Odisha, Bihar, Jharkhand, West Bengal, Chhattisgarh, Maharashtra, Uttar Pradesh, Uttarakhand, Andhra Pradesh and Telangana (Chandra et al., 2013;Majumder et al., 2012;Prakash, 2016;Stuart et al., 2013). ...
... B. fasciatus is a medically relevant snake prevalent in North East India and responsible for occasional snakebite incidents (Biakzuala et al., 2023;Kakati et al., 2023). However, the exact number of bites due to B. fasciatus in this region is lacking as most of the victims do not report to the hospitals for treatment and mostly rely on traditional healers and locally available herbal medicines. ...
... 1. Distribution range of Bungarus fasciatus. The snake icons in color "Red" depict the Indo-Myanmar lineage, "Green" depicts the East Asian Sundaland lineage, and "Blue" depicts the Sundaic lineage (Adapted from Biakzuala et al. (Biakzuala et al., 2023)). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.) ...
Article
Bungarus fasciatus also referred to as the Banded krait is a snake which possesses venom and belongs to the Elapidae family. It is widely distributed across the Indian subcontinent and South East Asian countries and is responsible for numerous snakebites in the population. B. fasciatus possesses a neurotoxic venom and envenomation by the snake results in significant morbidity and occasional morbidity in the victim if not treated appropriately. In this study, the efficacy of Indian polyvalent antivenom (Premium Serums polyvalent antivenom) was evaluated against the venom of B. fasciatus from Guwahati, Assam (India) employing the Third-generation antivenomics technique followed by identification of venom proteins from three poorly immunodepleted peaks (P5, P6 and P7) using LC-MS/MS analysis. Seven proteins were identified from the three peaks and all these venom proteins belonged to the phospholipase A2 (PLA2) superfamily. The identified PLA2 proteins were corroborated by the in vitro enzymatic activities (PLA2 and Anticoagulant activity) exhibited by the three peaks and previous reports of pathological manifestation in the envenomated victims. Neutralization of enzymatic activities by Premium Serums polyvalent antivenom was also assessed in vitro for crude venom, P5, P6 and P7 which revealed moderate to poor inhibition. Inclusion of venom proteins/peptides which are non-immunodepleted or poorly immunodepleted into the immunization mixture of venom used for antivenom production may help in enhancing the efficacy of the polyvalent antivenom.
... So far, many aspects of reproductive biology have been described among elapids (e.g., Tam et al. 1969;Lance 1976;Shine 1977;Shine and Keogh 1996;Shine et al. 2007;Marques et al. 2013). However, reproductive data on snakes in the genus Bungarus focuses almost entirely on post-mating aspects such as nesting, oviposition, and morphometrics of eggs and neonates (e.g., Evans 1905;Webb-Peploe 1946;Soderberg 1973;Whitaker 1978;Daniel 2002;Chanhome 2013;Knierim et al. 2019;Ray et al. 2020;Biakzuala et al. 2023), leaving many behavioral aspects of mating unrepresented. Herein we report copulation in the Banded Krait (Bungarus fasciatus), based on a single observation from northern West Bengal, India, supplemented by crowdsourced observational data. ...
... Herein we report copulation in the Banded Krait (Bungarus fasciatus), based on a single observation from northern West Bengal, India, supplemented by crowdsourced observational data. Despite a wide distribution throughout most of southern and southeastern Asia (Biakzuala et al. 2023), this species is nowhere abundant (Stuart et al. 2013), which perhaps explains the lack of qualitative data on reproduction. All relevant photographs were submitted as photographic vouchers to the Zoological Reference Collection, Lee Kong Chian Natural History Museum, National University of Singapore. ...
... Overall, the evolutionary relationships and taxonomy of Bungarus remain incompletely resolved. Integrative approaches combining morphological, ecological, and expanded molecular data will help clarify species boundaries and diversification processes within this medically significant snake genus [96][97][98][99][100]. ...
Article
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The events of the Cenozoic era such as mountain formation caused Iran to become one of the most amazing biodiversity hotspots in the world today. This pioneering study on Iranian snake biogeography integrates historical and ecological analyses. A phylogeographic review traces speciation and dispersal, while cluster analysis with a new snake checklist assesses faunistic similarities within Iran and its surroundings. Jaccard and Sorenson indices generate similarity dendrograms, Indicator Species Analysis pinpoints regional key species, and Endemism index calculates regional endemism rates, enriching our knowledge of Iran’s species diversity. Phylogeographic analyses identify four biogeographical corridors for snake ingress into Iran: the Arabian region through southwestern Iran, the Western Asian mountainous transition zone via northwestern Iran, the Turanian region into northeastern Iran, and the Indus River Valley into southeastern and eastern Iran. Dendrogram analysis divides snake fauna into three groups. The first group associates western Zagros and Khuzestan fauna with the Sahara and Arabian regions. The second group links Kopet Dagh and Turkmen Steppe fauna with the Turanian region, and Central Plateau and Baluchistan fauna with the Iranian region. The third group connects northwest highlands, Alborz and Zagros mountains, and Caspian Sea coasts with the Western Asian Mountain transition zone. The study validates broad biogeographic patterns via ecoregional associations and indicator species analysis, providing finer resolution. Species like Platyceps najadum in Caspian Hyrcanian mixed forests exemplify ecoregional alignment, while Zagros and Alborz mountains exhibit unique faunal indicators, indicating species-level divergence. Shared indicators among widespread ecoregions reflect habitat continuity; exclusive indicators emphasize regional distinctiveness. Despite endemic species prevalence, they seldom act as significant indicators due to various factors. Our research confirms the Zagros Mountains, Khuzestan Plain, Alborz Mountains, and Persian Gulf coasts as snake diversity hotspots, marked by higher species richness compared to other Iranian regions.
... Contrarily, the two specimens of this morph (MZMU269; MZMU270) cluster with the specimens of S. gorei in our morphological analysis thereby necessitating the taxonomic treatment for this completely plain morph from Mizoram as S. gorei until there is confirmatory work from DNA data. Because the specimens from different populations in this work are examined by different persons, they were re-examined and statistically tested to avoid any potential recorder bias following the similar approach in Biakzuala et al. (2023), thereby the one-way ANCOVA test did not detect any statistically significant difference between the two readings (p > 0.05). Furthermore, our readings and those from Smart et al. (2021) in the common specimens examined (n ¼ 21) were tested for recorder bias. ...
Article
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This paper reviews studies of the snakes of northeastern India published between 2001and 2024 identified from searchable databases, covering diversity, range extension, distribution records, new genus, new species, redescription, rediscovery, and taxonomic revision. This analysis of the literature and publicly available information presents an updated checklist of 126 snake species representing 12 families and 46 genera, along with their distribution across states in northeastern India and their IUCN Red List status. The study also reveals a research gap in some northeastern states that provides opportunities for further regional studies.
Article
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We described a new species of elapid snake genus Bungarus from the Tenasserim Mountain Range in Ratchaburi Province, western Thailand. Bungarus sagittatus sp. nov. can be distinguished from all congeners by having the combination of 15 dorsal scale rows; 215–217 ventral scales; 48–56 undivided subcaudal; prefrontal suture 2.4–2.6 times length of internasal suture; anterior chin shields larger than posterior chin shields; head of adult uniform black while juvenile black with small dim white patches on temporal and parietal areas; dorsal body black, with 25–31 white narrow bands, white and black bands at midbody covering 1.5–3.0 and 4.5–6.0 vertebral scales, respectively; dorsal body black bands not intruding ventrals or intruding ventrals less than 0.5 times of width of outer dorsal scales; ventral surface of body immaculate white; ventral side of tail white with a row of dark brown triangular patches on middle pointing posteriorly; tail relatively long, tail length/total length 0.140–0.143. Genetically, the new species has uncorrected pairwise divergences of ≥ 8.29% of the mitochondrial cytochrome b from other Bungarus species. Currently, the new species is only known from the type locality.
Article
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The genus Calotes Cuvier, 1817 (Agamidae: Draconinae) is highly diverse, with species occurring in South and Southeast Asia, and Oceania. Most species of the subfamily except C. versicolor have narrow geographic distributions. Calotes versicolor is distributed from western Iran in the west to south China and Indonesia in the east and has been introduced to parts of Africa and North America. The species has had a complicated taxonomic history; multiple species and subspecies related to C. versicolor were described from India and adjoining regions, which were synonymized in subsequent revisions. However, a study of Burmese C. versicolor yielded two new species, C. htunwini and C. irawadi , indicating that C. versicolor is a species complex. Such integrative taxonomic studies have not been carried out in India, the supposed type locality of C. versicolor . Hence, we studied C. versicolor sensu lato from the Indian subcontinent and generated sequences of mitochondrial 16S and COI fragments from tissues sampled from multiple localities in the region, including the type localities of its synonyms. Phylogenetic analyses revealed four well-supported, deeply-divergent lineages, supported by morphological data. These lineages represent (i) C. versicolor sensu stricto, from South India and parts of the east coast, (ii) C. irawadi sensu lato from northeast India and Southeast Asia, (iii) a synonym from the eastern Indo-Gangetic Plains which we resurrect here, and (iv) a subspecies from Pakistan which we elevate to species level. We provide re-descriptions for the resurrected or elevated species, and a diagnostic key to the species of the C. versicolor complex. The study shows that C. versicolor sensu stricto is endemic to parts of southern and eastern India, and not widely distributed, though it may have been introduced to other parts of the world.
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The yellowstripe scad, Selaroides leptolepis (Carangidae), is an important fish commodity in the Tropical Western Pacific (TWP). It has a latitudinal Pacific range from south of Japan down to northern Australia, with the highest concentration in Southeast Asia. However, its TWP fishing grounds have long been a hotspot of unsustainable exploitations, thus threatening the remaining wild populations. Despite the species’ commercial significance, there is limited understanding of its genetic structure and diversity. Herein, the genetic structure of S. leptolepis was examined using mitochondrial COI and CytB sequences. Both markers denoted significant genetic structuring based on high overall FST values. Hierarchical analysis of molecular variance (AMOVA), maximum likelihood (ML) phylogenetic trees, and median-joining (MJ) haplotype networks strongly supported the occurrence of two allopatrically distributed lineages. These comprised of a widespread Asian lineage and an isolated Australian lineage. Within-lineage distances were low (K2P < 1%) whereas across-lineage distances were remarkably high (K2P > 6%), already comparable to that of interspecific carangid divergences. Haplotype sequence memberships, high genetic variations, and the geographic correlation suggested that the Australian lineage was a putative cryptic species. Historical demographic inferences also revealed that the species experienced rapid expansion commencing on the late Pleistocene, most likely during the end of the Last Glacial Maximum (∼20,000 years ago). The present study encouraged the application of lineage-specific management efforts, as the lineages are experiencing different evolutionary pressures. Overall, accurate knowledge of the species’ genetic distribution is fundamental in protecting its diversity and assuring stock sustainability.
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Aim The emergence of venom is an evolutionary innovation that favoured the diversification and survival of snakes. The composition of snake venoms is known in detail from venom gland proteomic data. However, there is still a gap of knowledge about the forces that lead to the expression of different toxins in different proportions in the venom cocktail across space and time. Location World. Time period Modern. Major taxa studied Elapidae and Viperidae. Methods We integrated proteomic data with phylogenetic comparative methods to understand how ecological and biogeographic processes drive the evolution of snake venom. Results We observed that more productive environments favour a more complex venom, with more toxins in similar proportions. We found that taxa that live on islands, where there is lower variability of resources, tended to present less complex venom dominated by few toxins. In such cases, the extent of an island's isolation seems to be a relevant factor for faster fixation of specific venom compositions. Main conclusion We show that ecological and biogeographic processes, which can act differentially over time and space, affect the gene expression of toxins in snake venoms.
Article
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While powerful and user-friendly software suites exist for phylogenetics, and an impressive cybertaxomic infrastructure of online species databases has been set up in the past two decades, software targeted explicitly at facilitating alpha-taxonomic work, i.e., delimiting and diagnosing species, is still in its infancy. Here we present a project to develop a bioinformatic toolkit for taxonomy, based on open-source Python code, including tools focusing on species delimitation and diagnosis and centered around specimen identifiers. At the core of iTaxoTools is user-friendliness, with numerous autocorrect options for data files and with intuitive graphical user interfaces. Assembled standalone executables for all tools or a suite of tools with a launcher window will be distributed for Windows, Linux, and Mac OS systems, and in the future also implemented on a web server. The initial version (iTaxoTools 0.1) distributed with this paper (https://github.com/iTaxoTools/iTaxoTools-Executables) contains graphical user interface (GUI) versions of six species delimitation programs (ABGD, ASAP, DELINEATE, GMYC, PTP, tr2) and a simple threshold-clustering delimitation tool. There are also new Python implementations of existing algorithms, including tools to compute pairwise DNA distances, ultrametric time trees based on non-parametric rate smoothing, species-diagnostic nucleotide positions, and standard morphometric analyses. Other utilities convert among different formats of molecular sequences, geographical coordinates, and units; merge, split and prune sequence files, tables and species partition files; and perform simple statistical tests. As a future perspective, we envisage iTaxoTools to become part of a bioinformatic pipeline for next-generation taxonomy that accelerates the inventory of life while maintaining high-quality species hypotheses. The open source code and binaries of all tools are available from Github (https://github.com/iTaxoTools) and further information from the website (http://itaxotools.org)
Article
In widespread species, the diverse ecological conditions in which the populations occur, and the presence of many potential geographical barriers through their range are expected to have created ample opportunities for the evolution of distinct, often cryptic lineages. In this work, we tested for species boundaries in one such widespread species, the king cobra, Ophiophagus hannah (Cantor, 1836), a tropical elapid snake distributed across the Oriental realm. Based on extensive geographical sampling across most of the range of the species, we initially tested for candidate species (CS) using Maximum-Likelihood analysis of mitochondrial genes. We then tested the resulting CS using both morphological data and sequences of three single-copy nuclear genes. We used snapclust to determine the optimal number of clusters in the nuclear dataset, and Bayesian Phylogenetics and Phylogeography (BPP) to test for likely species status. We used non-metric multidimensional scaling (nMDS) analysis for discerning morphological separation. We recovered four independently evolving, geographically separated lineages that we consider Confirmed Candidate Species: 1) Western Ghats lineage; 2) Indo-Chinese lineage 3) Indo-Malayan lineage; 4) Luzon Island lineage, in the Philippine Archipelago. We discuss patterns of lineage divergence, particularly in the context of low morphological divergence, and the conservation implications of recognizing several endemic king cobra lineages.