ArticlePDF Available

Exploration, isolation and characterization of indigenous rhizobacteria from patchouli rhizosphere as PGPR candidates in producing IAA and solubilizing phosphate

Authors:

Abstract

Microorganisms that are active and aggressive colonizing the rhizosphere are known as rhizobacteria. They are able to act as biofertilizers, bioprotectants, biostimulants and bioremediation. This study aims to identify and characterize groups of rhizobacteria present in the patchouli rhizosphere that can produce IAA compounds and have the ability to solubilize phosphate in the soil. Soil samples were taken from the patchouli rhizosphere at Purwosari Village, Nagan Raya, Aceh Province, Indonesia. This study used quantitative and qualitative descriptive analysis through serial dilutions to obtain rhizobacterial strains. Parameters observed were macroscopic and microscopic characteristics, gram test, IAA production and phosphate solubilization. The study obtained 37 isolates of rhizobacteria from Purwosari (PS), comprising 25 isolates of gram positive and 12 isolates of gram negative. The rhizobacteria PS 5/1 produced the lowest IAA at 21.66 ppm, whereas isolate 5/6 C produced the highest IAA at 83.38 ppm. Twenty-five isolates of rhizobacteria could solubilize phosphate while the remaining 12 isolates did not have this ability. The rhizobacteria PS 7/1 resulted in the highest PSI at 2.55 and isolates PS 8/7 produced the lowest PSI at 1.33. The rhizobacteria isolates that can produce IAA and phosphate solubilizing have the potential to be used as PGPR candidates.
IOP Conference Series: Earth and Environmental Science
PAPER • OPEN ACCESS
Exploration, isolation and characterization of indigenous rhizobacteria
from patchouli rhizosphere as PGPR candidates in producing IAA and
solubilizing phosphate
To cite this article: H Halimursyadah et al 2022 IOP Conf. Ser.: Earth Environ. Sci. 951 012055
View the article online for updates and enhancements.
This content was downloaded from IP address 216.19.223.74 on 10/01/2022 at 16:10
Content from this work may be used under the terms of the Creative Commons Attribution 3.0 licence. Any further distribution
of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI.
Published under licence by IOP Publishing Ltd
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
1
Exploration, isolation and characterization of indigenous
rhizobacteria from patchouli rhizosphere as PGPR candidates
in producing IAA and solubilizing phosphate
H Halimursyadah*, Syamsuddin, Nurhayati, DN Rizva
Agrotechnology Department, Faculty of Agriculture, Universitas Syiah Kuala, Jalan
Tgk. Hasan Krueng Kalee 3, Darussalam-Banda Aceh 23111, Indonesia
*Email: halimursyadah@unsyiah.ac.id
Abstract. Microorganisms that are active and aggressive colonizing the rhizosphere are known
as rhizobacteria. They are able to act as biofertilizers, bioprotectants, biostimulants and
bioremediation. This study aims to identify and characterize groups of rhizobacteria present in
the patchouli rhizosphere that can produce IAA compounds and have the ability to solubilize
phosphate in the soil. Soil samples were taken from the patchouli rhizosphere at Purwosari
Village, Nagan Raya, Aceh Province, Indonesia. This study used quantitative and qualitative
descriptive analysis through serial dilutions to obtain rhizobacterial strains. Parameters observed
were macroscopic and microscopic characteristics, gram test, IAA production and phosphate
solubilization. The study obtained 37 isolates of rhizobacteria from Purwosari (PS), comprising
25 isolates of gram positive and 12 isolates of gram negative. The rhizobacteria PS 5/1 produced
the lowest IAA at 21.66 ppm, whereas isolate 5/6 C produced the highest IAA at 83.38 ppm.
Twenty-five isolates of rhizobacteria could solubilize phosphate while the remaining 12 isolates
did not have this ability. The rhizobacteria PS 7/1 resulted in the highest PSI at 2.55 and isolates
PS 8/7 produced the lowest PSI at 1.33. The rhizobacteria isolates that can produce IAA and
phosphate solubilizing have the potential to be used as PGPR candidates.
1. Introduction
Patchouli (Pogostemon cablin Benth.) is one of the important export commodities from Aceh which
includes patchouli oil, as the main fixative constituent in modern perfumery, and patchouli leaves. In
2018, the Agricultural Quarantine Agency recorded that nationally patchouli leaves were exported as
many as 297.7 tons with a value of Rp 470 million, and in 2019 they increased to 1,227 tons with a value
of Rp 1.3 billion. In 2020, however, there was a decrease in volume, reaching only 591.3 tons, and yet
due to a surge of price, the economic value could reach Rp 6.8 billion [1]. As of 2021, the Aceh Jaya
Department of Industry and Trade states that the average production of patchouli oil for farming
communities in Aceh Jaya District ranges from 5-6 tons per day [2].
Due to its benefits, the optimization of patchouli cultivation is necessary to ensure that its production
remains sustainable. One of the efforts to achieve this is by utilizing microorganisms in situ to support
plant growth, such as rhizobacteria. Rhizobacteria known as Plant Growth Promoting Rhizobacteria
(PGPR) are a group of microorganisms living in the rhizosphere that exert benefits for plants. PGPR
activities provide advantages for plant growth through direct or indirect mechanisms. The direct effects
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
2
of PGPR in promoting plant growth occur through various mechanisms, including fixation of free
nitrogen that is transferred into plants, production of siderophores that chelate iron (Fe) and make Fe
unavailable to pathogens, and solubilization of minerals such as phosphorus and synthesis of
phytohormones. Indirect effects in increasing plant growth, on the other hand, occur through suppression
of phytopathogens [3].
The roles of rhizobacteria in the rhizospheric area consist of providing nutrients in the soil,
decomposing organic matter, mineralizing organic matter, stimulating plant growth, and being a
biological agent (controlling pests and plant diseases). Soil microbes have many important roles in the
cycle of organic elements for life, such as producing the Indole Acetic Acid (IAA) hormone. IAA
hormone is an endogenous auxin that plays a role in root development, inhibits the growth of side shoots,
stimulates abscission, and plays a role in the formation of xylem and phloem tissues.
The ability to fix nitrogen, phosphate solubilizing, and produce siderophores, hydrogen cyanide
(HCN), chitinases, proteases, and cellulases are characteristics of suitable rhizobacteria. Phosphate
solubilizing bacteria can synthesize phytase and phosphatase enzymes that play a role in the hydrolysis
of organic P to dissolve inorganic P and produce organic acids that help release metal-fixed P [4]. In
addition, according to [5], the increase in plant growth by rhizobacteria can occur through one or more
mechanisms related to the physiological characteristics of bacteria and conditions in the rhizosphere.
Some rhizobacterial strains are able to synthesize IAA from precursors (basic materials) contained in
root exudates as well as from organic matter (plant and animal residues), whereas in general plants they
are unable to produce IAA in sufficient quantities for growth and development. Rhizobacteria that can
produce IAA and phosphate solubilizing came from the genera Pseudomonas, Bacillus, and Serratia.
The purpose of the research was to find out the rhizobacteria that produce IAA and phosphate
solubilization.
2. Materials and methods
This study was conducted at the Laboratory of Seed Science and Technology, Faculty of Agriculture,
Syiah Kuala University on October 2020 - April 2021. The initial stage was exploration aimed at taking
soil samples from the rhizosphere of a healthy patchouli plant growing in Purwosari, Nagan Raya, Aceh
Province, Indonesia.
2.1. Isolation and characterization
Isolation of rhizobacteria was carried out using the serial dilution method up to 10-9. The incubation
process was conducted at room temperature for 3-7 days. Soil samples were taken for a total of 10 kg
from 10 different points in the area. Then, the soil was dried at room temperature (28 - 300C). After
2x24 hours of drying, the soil was first sieved with a 9-mesh sieve shaker. Next, the soil was weighed
at 1 gram and placed it in a test tube, and later added with 9 mL of distilled water, and then shaken until
evenly distributed, hereinafter referred to as the first dilution of 10-1. The 1 mL pipette from 10-1 was
afterward put into a test tube containing 9 mL of diluent solution, hereinafter referred to as the second
dilution 10-2, up to the final dilution 10-9. Then, 1 mL at 10-9, 10-8 and 10-7 dilutions was taken and poured
into a petri dish by adding Sucrose Peptone Agar medium, which was still a liquid (±450C), and then
made a duplicate. Next, it was shaken homogeneously and waited until the medium solidified, after
which the petri dish could be inverted and then incubated for 2 days (pour method). Afterward,
observation and calculation for the number of colonies were done. Colonies can be distinguished by
surface appearance (shiny or gloomy), by colour (white, yellow, red, brown, orange, blue, green, and
purple), and by density (soft like slime, soft like butter, and some are hard and dry). Furthermore,
identification of rhizobacteria was carried out to obtain pure cultures from local indigenous
rhizobacteria. Parameters observed were the ability to produce IAA, phosphate solubilizing bacteria,
and gram test.
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
3
2.2. IAA production test
IAA production test was conducted qualitatively and quantitatively. The isolates were tested
qualitatively using Salkowski’s reagent. PGPR isolates were inoculated on flat Nutrient Agar media
supplemented with tryptophan with a concentration of 100 ppm using the T streak technique [6]. Then,
they were incubated at room temperature for 48 hours. Salkowski’s reagent was dripped onto PGPR
isolates that had been grown in the Nutrient Agar media until evenly distributed. Furthermore, isolates
that had been dripped with Salkowski’s reagent were stored in a dark room for 30 minutes. Positive
results were indicated by a change in the colour of the isolate colony to light yellow.
2.3. Phosphate solubilization test
Rhizobacteria isolates were taken using a sterile needle and grown on Pikovskaya media aseptically.
The medium was incubated for 7 x 24 hours at 370C. Observation of colony growth capable of forming
a clear zone was indicated as isolates capable of solubilizing phosphate. Colony diameter and clear zone
were measured at 7 x 24 hours). The formula for measuring Phosphate Solubilization Index (PSI) was
the ratio of total diameter (halo) and colony diameter. PSI category: 1.59 Low; 1.6 2.12 Medium; 2.15
2.59 High; 2.6 3 Very High [7].
3. Results and discussion
3.1. Isolation and identification of rhizobacteria from patchouli rhizosphere
The geographical position of indigenous rhizobacteria taken from the patchouli rhizosphere at Purwosari
Village, Nagan Raya, Aceh Province, Indonesia. The exploration of rhizobacteria as PGPR candidates
resulted in 37 isolates coded in PS. The performance of rhizobacteria isolates is shown in Figure 1.
Figure 1. Performance of several rhizobacteria isolates macroscopically (top) and microscopically
(bottom).
Further, candidate isolates as PGPR were identified macroscopically to identify the shape, colour,
edge, and elevation. The process of identifying rhizobacteria isolates was based on the key to the
determination in the book Bergey’s Manual of Systematic Bacteriology” [8] through the biochemical
tests. The results of the identification of rhizobacteria isolates were presented in Table 1.
PS 4/2
PS 6/3A
PS 8/1
PS 8/4K
PS 8/4U
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
4
Table 1. Macroscopic characteristics and gram test of indigenous rhizobacteria isolates from patchouli
rhizosphere.
Table 1 shows that the results of macroscopic identification reflect the diversity of rhizobacteria
isolates obtained based on shape, colouration, surface or edge conditions, and elevation. The
rhizobacterial isolate candidates that had been obtained were tested further to examine their ability to
produce several compounds, namely growth stimulants (biostimulants) and nutrient providers
(biofertilizers). Rhizobacteria are bacteria that colonize plant roots which produce phytohormones to
support plant growth and development as well as induce plant resistance. In addition, its role is also a
biocatalyst to support the availability of important organic acids for plants. The presence of rhizobacteria
as an environmental conservation agent to maintain the biodiversity of root microbes helps support
environmentally friendly agriculture that can increase agricultural yields.
Isolate
Code
Gram staining
Shape
Colour
Edge
Elevation
PS 5/1
Irregular
Greenish Brown
Undulate
Drop-like
Negative
PS 5/2 C
Irregular
Brown
Irregular
Flat
Positive
PS 5/2 H
Spindle
Brown
Undulate
Flat
Positive
PS 5/3
Circular
Greenish Dark Brown
Undulate
Flat
Negative
PS 5/4
Circular
Brown
Irregular
Flat
Negative
PS 5/5
Spindle
Brown
Undulate
Flat
Positive
PS 5/6 C
Circular
Brown
Entire
Flat
Positive
PS 5/6 PK
Circular
Brown
Entire
Flat
Positive
PS 5/7
Circular
Yellowish Brown
Entire
Flat
Positive
PS 6/1
Circular
Dark Brown
Undulate
Flat
Positive
PS 6/2
Circular
Yellowish White
Lobate
Raised
Positive
PS 6/3 A
Irregular
Light Brown
Undulate
Raised
Negative
PS 6/3 C
Circular
Yellowish White
Entire
Flat
Negative
PS 6/4
Circular
Dark Brown
Entire
Flat
Positive
PS 6/5
Circular
Light Brown
Undulate
Flat
Positive
PS 4/1
Circular
Brown
Undulate
Flat
Negative
PS 4/2
Irregular
Brown + Yellow
Undulate
Convex
Negative
PS 4/3
Irregular
Greyish Brown
Lobate
Flat
Positive
PS 4/4
Circular
Light Brown
Entire
Flat
Negative
PS 4/5
Circular
Brown
Entire
Drop-like
Positive
PS 4/6
Spindle
Brown
Entire
Flat
Positive
PS 4/7
Spindle
Greyish Green
Entire
Flat
Negative
PS 7/1
Spindle
Brownish Yellow
Undulate
Flat
Positive
PS 8/1
Spindle
Purple
Entire
Raised
Negative
PS 8/2
Spindle
Clear Yellow
Entire
Raised
Positive
PS 8/3
Circular
Brown
Entire
Flat
Positive
PS 8/4 K
Irregular
Yellow + Orange
Entire
Convex
Positive
PS 8/4 P
Spindle
White
Entire
Convex
Positive
PS 8/4 U
Spindle
Whitish Purple
Entire
Convex
Positive
PS 8/5
Spindle
Clear Yellow
Entire
Convex
Positive
PS 8/6
Circular
Clear Yellow
Undulate
Raised
Positive
PS 8/7
Rhizoid
Clear
Entire
Flat
Positive
PS 8/8 C
Irregular
Brown
Entire
Raised
Negative
PS 8/8 K
Spindle
Brown
Entire
Raised
Positive
PS 8/8 PK
Irregular
Brown
Entire
Flat
Positive
PS 8/9
Rhizoid
Yellow Orange
Entire
Convex
Negative
PS 8/12
Circular
Clear Brown
Entire
Flat
Positive
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
5
PS 4/2
PS 6/3A
PS 8/1
PS 8/4K
PS 8/4U
(Positive Gram)
(Positive Gram)
(Negative Gram)
(Positive Gram)
(Positive Gram)
Figure 2. Gram staining of several rhizobacteria isolates from patchouli rhizosphere.
The results of macroscopic tests on 37 isolates of rhizobacteria based on shape, colour, surface, edge
and elevation can be presumed to belong to several groups of soil bacterial genera such as Bacillus,
Pseudomonas, Chromobacterium, Erwinia, Flavobacterium, Micrococcus, and Serratia sp. The results
of the gram staining test of rhizobacteria produced 25 isolates of gram-positive reaction rhizobacteria
and 12 isolates of gram-negative reaction rhizobacteria (Table 1, Figure 2). The response of bacteria to
gram stain reactions is an important property to help determine the group or type of bacteria. For
example, the Bacillus group as one of the rhizosphere-dwelling bacteria can benefit plants with gram-
positive reactions which form anaerobic and aerobic endospores [9]. Pseudomonas spp is a gram-
negative straight or curved rod-shaped bacterium, measuring about 0.6x2 m, found singly, in pairs, and
sometimes forming short chains, does not have spores, does not have a sheath, and has a flagellum.
Certain Pseudomonas bacteria have two or three flagella, and so they are always active. The Serratia
group of bacteria are gram-negative bacteria from the family Enterobacteriaceae. The research has
indicated that the biological pigments produced by these bacteria have antifungal, immunosuppressive,
and antiproliferative activities [10].
PS 5/1
PS 6/1
PS 6/3A
PS 8/6
PS 8/8K
Undulate
Undulate
Undulate
Undulate
Entire
Figure 3. Microscopic observation of the edges of several rhizobacterial isolates.
The analysis carried out on the identification of rhizobacteria isolates as PGPR included the ability
of rhizobacteria to produce IAA compounds and the ability to solubilize phosphate qualitatively and
quantitatively. The test results of the ability of rhizobacteria isolates to produce IAA and the ability to
solubilize phosphate were presented in Table 2.
The results showed that 37 isolates of rhizobacteria were able to produce IAA as a whole. The PGPR
candidate isolates of rhizobacteria was capable of producing the IAA hormone compound to stimulate
plant growth. The rhizobacteria isolated from the exploration was able to produce IAA in the range of
values of 21.66 83.38 ppm. The rhizobacteria isolate PS 5/1 produced the lowest concentration of IAA
at 21.66 ppm with an absorbance value of 0.38 ml-1 filtrate, while isolate PS 5/6C produced the highest
concentration of IAA at 83.38 ppm with an absorbance value of 1.5 ml-1 filtrate. IAA compounds
released by rhizobacteria as exudates can be absorbed by plant roots which will be used to stimulate
meristematic cell division and initiation in plant physiological processes. Rhizobacteria are soil bacteria
that aggressively colonize plant rhizosphere. The dynamic rhizosphere rich in energy sources from
organic compounds released by plant roots (root exudates) is a habitat for various types of microbes to
develop, and at the same time a place for microbial hub and competition [11]. Each plant secretes root
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
6
exudates with different compositions so that they also act as microbial selectors; its effects can increase
the development of certain microbes and inhibit the development of other microbes [12][3]. The more
root exudation is, the greater the number and diversity of microbes are. This condition will increase
competition in the rhizosphere colonization process. Rhizobacteria are the most efficient competitor
microbes that can shift from the position of native microbes in the rhizospheric zone to the middle age
of the plant [13].
Table 2. Isolates of rhizobacteria that produce IAA and phosphate solubilizing.
Isolate Code
IAA
Phosphate Solubilizing
Absorbance
Value (μ/ml
filtrate)
IAA Concentration
(ppm)
Halo
Diameter
(cm)
Colony
Diameter
(cm)
Phosphate
Solubility
Index
PS 4/1
0.51
28.38
1.47
0.73
2.01
PS 4/2
0.77
43.16
1.60
0.70
2.28
PS 4/3
0.69
38.83
1.00
0.70
1.42
PS 4/4
0.91
50.61
1.23
0.63
1.95
PS 4/5
0.93
52.00
-
-
-
PS 4/6
0.58
32.61
1.67
0.80
2.08
PS 4/7
0.82
45.61
-
-
-
PS 5/1
0.38
21.66
-
-
-
PS 5/2C
0.50
27.83
-
-
-
PS 5/2H
0.53
29.83
-
-
-
PS 5/3
0.50
28.16
1.20
0.70
1.71
PS 5/4
0.84
47.00
1.50
0.77
1.94
PS 5/5
1.01
56.16
1.20
0.70
1.71
PS 5/6C
1.50
83.38
1.47
0.80
1.83
PS 5/6 PK
0.62
34.94
1.37
0.80
1.71
PS 5/7
0.72
40.27
-
-
-
PS 6/1
0.61
34.05
1.57
0.70
2.24
PS 6/2
0.60
33.38
1.40
0.63
2.22
PS 6/3A
0.65
36.50
1.67
0.70
2.38
PS 6/3C
0.81
45.33
1,00
0.73
1.36
PS 6/4
0.62
34.50
-
-
-
PS 6/5
0.67
37.38
-
-
-
PS 7/1
0.64
36.00
1.97
0.77
2.55
PS 8/1
0.53
29.61
-
-
-
PS 8/2
0.65
36.16
1.60
0.77
2.07
PS 8/3
0.54
30.16
1.67
0.80
2.08
PS 8/4K
0.57
32.05
1.90
0.80
2.37
PS 8/4P
0.48
27.05
1.10
0.80
1.37
PS 8/4U
0.46
25.88
1.93
0.83
2.32
PS 8/5
0.60
33.50
1.50
0.70
2.14
PS 8/6
0.69
38.72
-
-
-
PS 8/7
0.46
25.94
1.03
0.77
1.33
PS 8/8C
0.60
33.61
1.63
0.80
2.03
PS 8/8K
0.41
23.27
1.43
0.80
1.78
PS 8/8 PK
0.69
38.61
1.97
0.80
2.46
PS 8/9
0.64
35.83
-
-
-
PS 8/12
0.42
23.83
1.53
0.80
1.91
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
7
Figure 4. PS 8/4P (a) rhizobacteria isolates and PS 5/1 (b) rhizobacteria isolates producing IAA.
IAA hormone is a growth regulator that plays a role in the process of plant growth. IAA produced
by microbes in the rhizosphere can increase the number of root hairs and size and the number of
adventitious roots of plants [14]. The IAA hormone is synthesized as a secondary metabolite produced
under conditions of suboptimal bacterial growth or when the amino acid precursor tryptophan is
available. It has been reported that IAA production by bacteria can vary among different species and
strains, and it is also influenced by culture condition, growth stage, and substrate availability. Moreover,
isolates from the rhizosphere are more efficient auxin producers than isolates from the bulk soil [15]
[16].
In addition, the test results of 37 isolates of rhizobacteria differed in their ability to solubilize
phosphate. There were 10 isolates that did not have the ability to solubilize phosphate (Table 2). The
ability of rhizobacteria to solubilize phosphate is an indication that rhizobacteria can act as PGPR that
can stimulate plant growth and release bounded-phosphate in the soil to become available to plants. The
rhizobacteria isolates PS 7/1 produced the highest PSI of 2.55 and the isolates PS 8/7 produced the
lowest PSI of 1.33.
PS 4/2
PS 6/3A
PS 8/1
PS 8/4K
PS 8/4U
+
+
-
+
+
Figure 5. Rhizobacteria isolates (+) able to solubilize phosphate indicated by the formation of a clear
zone; while rhizobacteria isolates (-) had no ability to solubilize phosphate.
Rhizobacteria isolates capable of phosphate solubilizing were characterized by the formation of a
clear zone around the bacterial colonies when grown on solid Pikovskaya medium (Figure 5). The test
for the ability of rhizobacteria to solubilize phosphate was marked by the formation of a clear zone
around the bacterial colonies tested on Pikovskaya medium due to the breakdown of Ca3(PO4)2
contained in the medium [17]. Rhizobacteria have different abilities in dissolving phosphate. Phosphate
solubilizing rhizobacteria improve plant phosphorus nutrition by mobilizing inorganic and organic
phosphates. Several mechanisms of phosphate solubilization have been reported. Phosphate solubilizing
microbe produces different types and amounts of organic acids. Some groups of organic acids produced
by rhizobacteria are citric acid, succinic acid, fumaric acid, gluconic acid, oxalic acid, malic acid, and
gluconic acid [18]. Organic acids produced by microorganisms vary in quality and quantity in liberating
phosphate. Different mechanisms of inorganic phosphate solubilization are acidification due to the
production of organic acids and inorganic acids, as well as H+ excretion, exopolysaccharide production,
and siderophore production [19]. Phosphate-solubilizing bacteria (PSB) have the ability to solubilize
insoluble phosphorus (P) and release soluble P. Phosphate solubilizing rhizobacteria convert unavailable
P to available P to meet the needs of plants through reshuffle and absorption [20].
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
8
Colony size does not always affect the formation of a clear zone around the colony because a large
colony diameter does not always result in a large clear zone diameter. In principle, the clear zone area
can show the ability of rhizobacteria to solubilize phosphate, but it cannot show the amount of phosphate
concentration dissolved in the medium. Isolates of rhizobacteria that form clear zones faster and have a
broad Phosphate Solubilization Index (PSI) value are phosphate solubilizing bacteria that have the
potential as biofertilizers by solubilizing phosphate elements bound to other elements such as Fe, Al,
Ca, and Mg, and thus, phosphate elements become available [21]. A biofertilizer consisting of a
consortium of bacteria that has the ability to dissolve phosphate, dissolve potassium, and produce auxin
can have a high potential for increasing growth and yields [22]. Isolated rhizobacteria with codes PS
4/1, PS 4/2, PS 4/3, PS 4/4, PS 4/6, PS 5/3, PS 5/4, PS 5/5, PS 5/6C, PS 5/6K, PS 6/1, PS 6/2, PS 6/3A,
PS 6/3C, PS 7/1, PS 8/2, PS 8/3, PS 8/4K, PS 8/4P, PS 8/4U, PS 8/5, PS 8/7, PS 8/8C, PS 8/8K, PS
8/8PK, and PS 8/12 were bacterial isolates that have the potential as biological fertilizers because of
their ability to form clear zones compared to other isolates.
4. Conclusion
The results of exploration, identification, and characterization produced 37 isolates of indigenous
rhizobacteria from patchouli rhizosphere located in Purwosari, Nagan Raya, Aceh Province, Indonesia.
Thirty-seven rhizobacteria isolates had the ability to produce IAA. The rhizobacteria isolate PS 5/1
gained the lowest IAA at a concentration of 21.66 ppm, while isolate 5/6 C produced IAA at 83.38 ppm.
Twenty-five rhizobacteria isolates could dissolve phosphate and the remaining 12 isolates did not have
this ability. The rhizobacteria isolate PS 7/1 produced the highest PSI at 2.55 and the isolates PS 8/7
gained the lowest PSI at 1.33. Rhizobacteria isolates that produce IAA and able to solubilize phosphate
have the potential to be used as PGPR candidates.
References
[1] Annonymous 2020 Di Tengah Pandemi, Harga Minyak Nilam Meroket Agrofarm.co.id
[2] Yunus A 2021 Atsiri Minyak Nilam Aceh Jaya Tembus Pasar Luar Negeri rri.co.id
[3] Ahemad M and Kibret M 2014 Mechanisms and applications of plant growth promoting
rhizobacteria: Current perspective J. King Saud Univ. - Sci. 26 120
[4] Widawati S 2015 Isolation And Activity Of Plant Growth Promoting Rhizobacteria
(Rhizobium, Azospirillum, Azotobacter, Pseudomonas) Akt. Plant Growth Promot.
Rhizobacteria dari Tanah Perkeb. Karet 7788
[5] Gutiérrez-Mañero F J, Ramos-Solano B, Probanza A, Mehouachi J, Tadeo F R and Talon M
2001 The plant-growth-promoting rhizobacteria Bacillus pumilus and Bacillus licheniformis
produce high amounts of physiologically active gibberellins Physiol. Plant. 111 20611
[6] Sufriadi E, Meilina H, Munawar A A, Muhammad S and Idroes R 2021 Identification of β-
Caryophyllene (BCP) in Aceh patchouli essential oil (PEO) using gas chromatography-mass
pectrophotometry (GC-MS) IOP Conf. Ser. Earth Environ. Sci. 667
[7] Karpagam T and Nagalakshmi P K 2014 Isolation and characterization of Phosphate
Solubilizing Microbes from Agricultural soil Int.J.Curr.Microbiol.App.Sci 3 60114
[8] Edition S and Four V 2009 Systematic Bacteriology
[9] Sinclair C G 1939 Bergeys Manual of Determinative Bacteriology Am. J. Trop. Med. Hyg. s1-
19 6056
[10] Neubauer P, Craig Crampton M, Li W-J, Rao N M, W-j L, Prabhu Narsing Rao M and Xiao M
2017 Fungal and Bacterial Pigments: Secondary Metabolites with Wide Applications Front.
Microbiol 8 1113
[11] Khan M S, Zaidi A and Ahmad E 2014 Mechanism of phosphate solubilization and
physiological functions of phosphate-solubilizing microorganisms Phosphate Solubilizing
Microorg. Princ. Appl. Microphos Technol. 3162
[12] Massalha H, Korenblum E, Tholl D and Aharoni A 2017 Small molecules below-ground: the
3rd International Conference on Agriculture and Bio-industry (ICAGRI 2021)
IOP Conf. Series: Earth and Environmental Science 951 (2022) 012055
IOP Publishing
doi:10.1088/1755-1315/951/1/012055
9
role of specialized metabolites in the rhizosphere
[13] Kloepper J W 1981 Relationship of in vitro Antibiosis of Plant Growth-Promoting
Rhizobacteria to Plant Growth and the Displacement of Root Microflora Phytopathology 71
1020
[14] Ribeiro C M and Cardoso E J B N 2012 Isolation, selection and characterization of root-
associated growth promoting bacteria in Brazil Pine (Araucaria angustifolia) Microbiol. Res.
167 6978
[15] Mohite B 2013 Isolation and characterization of indole acetic acid (IAA) producing bacteria
from rhizospheric soil and its effect on plant growth J. Soil Sci. Plant Nutr. 13 63849
[16] Antonius S, Budisatria, Rachel and Kumala Dewi T 2016 The use of Sprout as Precursor for
the Production of Indole Acetic Acid by Selected Plant Growth Promoting Rhizobacteria
Grown in the Fermentor Microbiol. Indones. 10 1318
[17] Pambudi A, Noriko N and Sari E P 2017 Isolasi dan Karakterisasi Bakteri Tanah Sawah di
Kecamatan Medan Satria dan Bekasi Utara, Kota Bekasi, Jawa Barat J. Al-AZHAR Indones.
SERI SAINS DAN Teknol. 3 187
[18] Kalayu G 2019 Phosphate Solubilizing Microorganisms: Promising Approach as Biofertilizers
[19] Phrabu Neha 2019 Phosphate solubilization by microorganisms Adv. Biol. Sci. Res. 16176
[20] Liu M, Liu X, Cheng B Sen, Ma X L, Lyu X T, Zhao X F, Ju Y L, Min Z and Fang Y L 2016
Selection and evaluation of phosphate-solubilizing bacteria from grapevine rhizospheres for
use as biofertilizers Spanish J. Agric. Res. 14
[21] Widawati S and Suliasih S 1970 The population of phosphate solubilizing bacteria (PSB) from
Cikaniki, Botol Mountain, and Ciptarasa Area, and the ability of PSB to solubilize insoluble P
in solid pikovskaya medium Biodiversitas J. Biol. Divers. 7 10913
[22] Chaveevan L, Pimtida R, Pikul H, Hidenori S & and Ken S 2010 Bioscience, Biotechnology,
and Biochemistry Development of a New Biofertilizer with a High Capacity for N 2 Fixation,
Phosphate and Potassium Solubilization and Auxin Production Development of a New
Biofertilizer with a High Capacity for N 2 Fixation, Phosphate and Potassium Solubilization
and Auxin Production, Bioscience Biotechnol. Biochem. 74 1098101
... After growing isolates in AG broth media for 3 days, 5 L of each isolate culture was drip on paper disc and it was placed on Pikovskaya's agar media for 24 -48 h [22]. Then, the clear zone that appears was observed and calculated to determine the phosphate solubilization index (PSI) using the equation below [23]: ...
... The PSI values were classified ( Table 1) according to the categories used by Halimursyadah et al. [23]. ...
Article
Full-text available
Rhizobia are bacteria that symbiosis with host plant, as shown in the root nodules formation, and provide nitrogen that can be absorbed by plants in greater quantities than rhizobacteria. Available Nitrogen, which absorbed by plants, is the essential requirement for plant growth because its role in increasing yield and quality, hence it is needed in greater quantities than other nutrients. The study aimed to determine the macroscopic and microscopic diversity of rhizobia isolates from the groundnut nodules and their potential as PGPRs, and to identify 16S rRNA isolates with the best potential as PGPRs molecularly. The methods used were isolation from root nodules, screening of PGPR potential, molecular identification based on the 16S rRNA gene, and phylogenetic analysis to determine their kinship. Based on the isolation results, 17 Gram-negative isolates were obtained white to pink or orange color on AG media with various colony characteristics in terms of shape, margin, elevation, and texture. KT 20, which was selected as rhizobia isolate with the best potential as PGPR, has ammonium concentration of 23.12 ppm, synthesizes IAA with a concentration of 10.36 ppm, and phosphates solubilization activity, although its ability to synthesize proteases is low. The results of molecular identification of 16S rRNA showed that KT 20 belongs to the Rhizobium genus with a similarity of 99.48 % and bootstrap value of 96 %. HIGHLIGHTS Isolate KT 20 (identified rhizobia) has excellent ability in fixing nitrogen, which plants needs the most and legumes requires in large number Beside the ability of Isolate KT 20 to fix nitrogen, it also able to synthesize IAA, solubilize phosphate, and synthesize protease The ability of isolate KT 20 as PGPR was equal or better than other rhizobacteria that has been analyzed in other in vitro studies GRAPHICAL ABSTRACT
Article
Full-text available
Preserving the viability of rhizobacteria during plant application poses a significant challenge when utilizing rhizobacteria as biofertilizers, especially under adverse environmental conditions. Therefore, the selection of a suitable carrier material for rhizobacteria plays a crucial role in ensuring the sustained viability of these microorganisms. Nanomaterials, particularly nanohydroxyapatite (nHA), have garnered attention for sustaining rhizobacterial viability, high loading capacity, high biodegradability, and biocompatibility, which facilitate microbial interactions. In this study, nHA was synthesized using a hydrothermal method and used as a carrier for two rhizobacteria strains (Pd and Tb). The structural and morphological properties of nHA were examined through XRD and scanning electron microscopy analyses. Rhizobacteria were encapsulated within the carrier material, and their viability was evaluated using the total plate count method. Following their immobilization on nHA, the phosphate-solubilizing capacity of rhizobacteria was evaluated using Pikovskaya’s medium. A nitrogen-free bromothymol medium was utilized to qualitatively assess the nitrogen-fixing ability of rhizobacteria. Furthermore, rhizobacteria were identified using 16S rRNA gene sequencing, followed by analysis to construct a phylogenetic tree. nHA was found to meet the required quality criteria, exhibiting a spherical morphology with an average particle size of 68 nm and a porosity of 54.78%. The nHA carrier demonstrated favorable physical attributes to sustaining rhizobacterial viability with pH 8.95 and an electrical conductivity of 55.4 μS/cm. Rhizobacteria loaded onto the nHA carrier maintained comparable viability to those without carriers. The highest viability of the rhizobacterial strains Pd and Tb loaded onto the nHA carrier was observed on the seventh day after inoculation, measuring at 2.480 × 10 ⁷ and 1.040 × 10 ⁷ CFU/mL, respectively. The qualitative tests of nHA as rhizobacterial carrier demonstrated that rhizobacteria retained their ability to solubilize phosphate and fix nitrogen. Furthermore, both rhizobacteria have been identified. Pd rhizobacterium was identified with complete match to Brevundimonas olei strain Prd2. Similarly, Tb rhizobacterium showed 100% similarity to Bacillus altitudinis strain NPB34b. Based on this reseach, nanohydroxyapatite could be the potential carrier to protect rhizobacteria from external stressors and to maintain their viability over the long term. These findings indicate the potential of a nanohydroxyapatite–rhizobacteria system as a promising environmentally friendly fertilizer.
Article
Full-text available
This study aimed to determine the composition of β-Caryophyllene (BCP) content in patchouli oil from various regions in Aceh. The data from GC-MS analysis can also describe the type of BCP isomer most commonly found in Aceh patchouli. This research used Aceh Pogostemon cablin Benth patchouli oil from 17 different locations. Samples were analyzed using TSQ™ 9000 Triple Quadrupole GC-MS/MS (Thermo Scientific) with TraceGOLD TG-1MS GC Columns. The mean BCP retention time was 14.64 minutes, with a standard deviation (SD) of 0.16. Only one type of BCP compound isomer appeared, namely Bicyclo [7.2.0] undec-4-ene, 4,11,11-trimethyl-8-methylene-, [1R- (1R*, 4Z, 9S*)]. The results also showed that the average BCP level was 5.51%. Aceh patchouli contains a much higher BCP level than the minimum commercial target (3.4-3.5%). The MS spectrum data also showed a high similarity between the patchouli oil sample fragmentation and the compound library.
Conference Paper
Full-text available
Twenty one bioactive phytochemical compound were identified in the methanolic extract of Cyperus aucheri Jaub.The identification of phytochemical compounds is based on the peak area ,retention time, molecular weight and MS Fragmentation .GC-MS analysis of Cyperus aucheri Jaub. Revealed the existence of the 3-Phenylheptanoic acid , benzylammonium salt , 2-(benzyloxymethyl)-5-methylfuran , 4-methoxycarbonylphenyl)methyl 4-methylbenzoate, Benzoic acid , 4-methyl-,[4-(methoxycarbonyl)phenyl]methyl ester, dodeca-5,7-diyne-1,12-diol, 4-Isopropyl-3,7-dimethyloctahydro-1H-cyclopenta[1,3]cyclopropa[1,2]benzol-3-ol ,Benzoic acid,4-methyl-,[4-(methoxycarbonyl)phenyl]methyl ester , 6-Oxo-heptanoic acid methyl ester, Benzamide , N-[4-(3-furan-2-ylacryloyl)phenyl]-4-methyl-ester , O-alpha-dextro-glucopyranosyl-(1-3)-beta-dextro-fructofuranosyl-alpha-dextro-glucopyranoside , 1-methyl-5-(propan-2-yl)-3,6,7-trioxatricyclo[3.2.2.02,4]nonane, 2,3-diacetyloxypropyl (9E,12E,15E)-octadeca-9,12,15-trienoate, 2,3-bis(acetyloxy)propyl ester , Methyl 8-oxohexadecanoate , ethyl (3α,5β,7α,12α)-3,7,12-trihydroxycholan-24-oate, Furan-2-carbohydrazide , N2-(3-indolylmethylene) , 1,2-Propanediol , 3-(octadecyloxy)-,diacetate , N,N-Dimethyltetradecylamine, 1-O-butyl 2-O-tetradecyl benzene-1,2-dicarboxylate , 2,7-Diphenyl-1,6-dioxopyridazino[4,5:2',3']pyridazin , 1-Heptadecanecarboxylic acid, Dasycarpidan-1-methanol , acetate (ester) .It contain chemical constitutions which may be useful for various herbal formulation as Antioxidant
Article
Full-text available
Phosphorus (P) is a macronutrient required for the proper functioning of plants. Because P plays a vital role in every aspect of plant growth and development, deficiencies can reduce plant growth and development. .ough soil possesses total P in the form of organic and inorganic compounds, most of them remain inactive and thus unavailable to plants. Since many farmers cannot afford to use P fertilizers to reduce P deficits, alternative techniques to provide P are needed. Phosphate solubilizing microbes (PSMs) are a group of beneficial microorganisms capable of hydrolyzing organic and inorganic insoluble phosphorus compounds to soluble P form that can easily be assimilated by plants. PSM provides an ecofriendly and economically sound approach to overcome the P scarcity and its subsequent uptake by plants. .ough PSMs have been a subject of research for decades, manipulation of PSMs for making use of increasing fixed P in the soil and improving crop production at the field level has not yet been adequately commercialized. .e purpose of this review is to widen the understanding of the role of PSMs in crop production as biofertilizers.
Article
Full-text available
Indole-3-acetic acid (IAA) is the main member of the auxin family that controls many important physiological processes in plant. Such beneficial IAA that produced by plant growth promoting rhizobacteria (PGPR), enhances plant growth and was believed to increase the access to more nutrients in the soil. The precursor for syntetizing IAA is tryptophan, and it was also found in the sprout or other sources of protein. The aim of this study was to investigate the best bacteria and growth medium supplemented with extract of bean sprout or fish meal as the sources of precursor for the IAA production. Several bacterial isolates were screened for highest IAA production. IAA production was measured with High Performance Liquid Chromatography. All of isolates were able to produce IAA and isolates PS1 was selected for the further assay by cultivating under fermentor system. Sequencing of 16S rDNA of PS1 isolate indicated as Acinetobacter sp. The result showed that the highest IAA production during fermetation was 62,428 ppm found in under medium supplemented with mung bean sprout extracts grown in fermentor, after 24 hours incubation.
Article
Full-text available
The demand for natural colors is increasing day by day due to harmful effects of some synthetic dyes. Bacterial and fungal pigments provide a readily available alternative source of naturally derived pigments. In contrast to other natural pigments, they have enormous advantages including rapid growth, easy processing, and independence of weather conditions. Apart from colorant, bacterial and fungal pigments possess many biological properties such as antioxidant, antimicrobial and anticancer activity. This review outlines different types of pigments. It lists some bacterial and fungal pigments and current bacterial and fungal pigment status and challenges. It also focuses on possible fungal and bacterial pigment applications.
Article
Full-text available
Phosphate-solubilizing bacteria (PSB) have the ability to solubilize insoluble phosphorus (P) and release soluble P. Extensive research has been performed with respect to PSB isolation from the rhizospheres of various plants, but little is known about the prevalence of PSB in the grapevine rhizosphere. In this study, we aimed to isolate and identify PSB from the grapevine rhizosphere in five vineyards of Northwest China, to characterize their plant-growth-promoting (PGP) traits, evaluate the effect of stress on their phosphate-solubilizing activity (PSA), and test their ability to stimulate the growth of Vitis vinifera L. cv. Cabernet Sauvignon. From the vineyard soils, 66 PSB isolates were screened, and 10 strains with high PSA were identified by 16S rRNA sequencing. Sequence analysis revealed that these 10 strains belonged to 4 genera and 5 species: Bacillus aryabhattai, B. megaterium, Klebsiella variicola, Stenotrophomonas rhizophila, and Enterobacter aerogenes. The selected PSB strains JY17 (B. aryabhattai) and JY22 (B. aryabhattai) were positive for multiple PGP traits, including nitrogen fixation and production of indole acetic acid (IAA), siderophores, 1-aminocyclopropane-1-carboxylate (ACC) deaminase, chitinase, and protease. JY17 and JY22 showed strong PSA under stress conditions of high pH, high salt, and high temperature. Therefore, these two isolates can be used as biofertilizers in saline-alkaline soils. The inoculation with PSB significantly facilitated the growth of V. vinifera cv. Cabernet Sauvignon under greenhouse conditions. Use of these PSB as biofertilizers will increase the available P content in soils, minimize P-fertilizer application, reduce environmental pollution, and promote sustainable agriculture.
Article
Full-text available
Phosphate solubilizing bacteria (PSB) were collected from plant rhizosphere at Cikaniki (1100 m asl.), soil at Botol Mountain (1000, 1500, and 1800 m asl.), and Ciptarasa (600, 1000, and 1500 m asl.), area at Gunung Halimun National Park (GHNP). The soil ware collected randomly from 3 areas and taken from 0-15 cm depth in the plants rhizosphere at Cikaniki and forest floor soil in Gunung Botol and Ciptarasa. The result showed that the difference of elevation area, soil pH, forest vegetation, and microbial habitat (rhizosphere and forest floor) were not the inhabitation factors of the biodiversity of PSB and their ability to solubilize insoluble phosphate, but the inhabitation factors on the growth of the PSB population. The highest population of PSB at GHNP was founded in the plant rhizosphere of Altingia exelsa Norona and Schima wallichii (Dc.) Korth (107sel/g soil) at Cikaniki and in the forest floor soil (108sel/g soil) at Botol Mountain (1000 m asl.). Pseudomonas sp., Bacillus sp., Bacillus megaterium, and Chromobacterium sp. dominated Cikaniki, Botol Mountain and Ciptarasa area. Those isolates could solubilize insoluble phosphate on solid Pikovskaya medium with the range of diameter is 1.5-2.5 cm.
Article
p> Abstrak - Produksi padi di Indonesia setiap tahun mengalami peningkatan, namun peningkatan ini belum mampu memenuhi kebutuhan nasional sehingga impor masih harus dilakukan. Salah satu masalah dalam produksi beras adalah penggunaan pupuk berlebih yang tidak hanya meningkatkan biaya produksi, namun juga merusak kondisi tanah. Aplikasi bakteri tanah sebagai Plant Growth Promoting Rhizobacteria (PGPR) dapat menjadi salah satu solusi terhadap masalah ini. Penelitian ini bertujuan untuk mengisolasi bakteri tanah dari 3 lokasi sawah daerah Bekasi, membandingkan keberadaan total bakteri pada ketiga lokasi tersebut, dan melakukan karakterisasi isolat berdasarkan karakter yang dapat memicu pertumbuhan tanaman. Dari ketiga lokasi, diperoleh total 59 isolat dan 5 diantaranya berpotensi sebagai PGPR karena kemampuan fiksasi Nitrogen, melarutkan Fosfat, katalase positif, dan motil. Dari ketiga lokasi pengambilan sampel, BK1 memiliki jumlah total bakteri terendah karena aplikasi pemupukan dan pestisida berlebih yang ditandai tingginya kadar P total, serta tingginya residu klorpirifos, karbofuran, dan paration. Kondisi fisik tanah BK1 juga didominasi partikel liat yang menyebabkan tanah menjadi lebih padat. Peningkatan jumlah penggunaan pupuk tidak selalu diikuti peningkatan produktivitas tanaman. Kata Kunci - Bakteri tanah, Rhizosfer sawah, PGPR, Pupuk Hayati Abstract - Rice production in Indonesia has increased annually, but this increase has not reached national demand,so imports still done. One of the problems in rice production is the use of excessive fertilizers that not only increase production costs, but also decreased the soil conditions. The application of soil bacteria as Plant Growth Promoting Rhizobacteria (PGPR) can be the one solution to face this problem. The objective of this study was isolate soil bacteria from 3 locations of rice field in Bekasi, compare the total bacteria in the three locations, and characterize isolates based on the character that can promote plant growth. From three locations, a total of 59 isolates were obtained and 5 of them were potential as a PGPRs due to its Nitrogen fixation activity, Phosphate solubilization, positive catalase, and motility. From three sampling sites, BK1 has the lowest TPC value because of excessive fertilizers and pesticides application which indicated by high total P levels, and also high chlorpyrifos, carbofuran and paration residues. The physical condition of BK1 soil is also dominated by clay particles which causes the soil more solid. Increasing of fertilizer application is not always followed by increased plant productivity. Keywords - Biofertilizer, PGPR, Rice field rhizosphere, Soil Bacteria </p
Chapter
Phosphorus is known as the master key element among all the elements required for plant growth. The diverse soil phosphorus forms can be categorized as soluble orthophosphates, insoluble inorganic and insoluble organic phosphates. Large reactivity of orthophosphate ions with numerous soil constituents convert it into insoluble inorganic and insoluble organic forms. Therefore, it is the least mobile element in most soil and is unavailable for plant uptake. However, numerous microorganisms can enhance plant phosphorus nutrition by solubilizing insoluble phosphates. Phosphate solubilizing microorganisms have diverse mechanisms that aid in the solubilization of fixed or unavailable phosphorus. Different mechanisms of inorganic phosphate solubilization are acidification due to the production of organic acids, inorganic acids, and H+ excretion, exopolysaccharide production, and siderophore production. Phosphatase, phytase, and C-P lyase enzymes aid in the solubilization of organic phosphate. Potential phosphate solubilizing microorganisms have been formulated as biofertilizer and extensively applied in fields for the promotion of plant growth. Interestingly, the property of phosphate solubilization has also found tremendous application in the field of phytoremediation. This chapter presents an overview of phosphate solubilizing microorganisms, different mechanisms used by microorganisms to solubilize insoluble phosphate, and finally applications of phosphate solubilizing microorganisms.
Article
Phosphorus (P) is the second important key plant nutrient after nitrogen. An adequate supply of P is therefore required for proper functioning and various metabolisms of plants. Majority of P in soils is fixed, and hence, plant available P is scarcely available despite the abundance of both inorganic and organic P forms in soils. A group of soil microorganisms capable of transforming insoluble P into soluble and plant accessible forms across different genera, collectively called phosphate-solubilizing microorganisms (PSM), have been found as best eco-friendly option for providing inexpensive P to plants. These organisms in addition to supplying soluble P to plants also facilitate the growth of plants by several other mechanisms, for instance, improving the uptake of nutrients and stimulating the production of some phytohormones. Even though several bacterial, fungal and actinomycetal strains have been identified as PSM, the mechanism by which they make P available to plants is poorly understood. This chapter focuses on the mechanism of P-solubilization and physiological functions of phosphate solubilizers in order to better understand the ecophysiology of PSM and consequently to gather knowledge for managing a sustainable environmental system. Conclusively, PSM are likely to serve as an efficient bio-fertilizer especially in areas deficient in P to increase the overall performance of crops. © Springer International Publishing Switzerland 2014. All rights reserved.