Available via license: CC BY 4.0
Content may be subject to copyright.
Development and Large-Scale Validation of A Highly
Accurate SARS-COV-2 Serological Test Using
Regular Test Strips for Autonomous and Affordable
Finger-Prick Sample Collection, Transportation, and
Storage
Renata G.F. Alvim
Federal University of Rio de Janeiro
Tulio M. Lima
Federal University of Rio de Janeiro
Danielle A. S. Rodrigues
Federal University of Rio de Janeiro
Federico F. Marsili
Federal University of Rio de Janeiro
Vicente B. T. Bozza
Federal University of Rio de Janeiro
Luiza M. Higa
Federal University of Rio de Janeiro
Fabio L. Monteiro
Federal University of Rio de Janeiro
Daniel P. B. Abreu
Federal University of Rio de Janeiro
Isabela C. Leitão
Federal University of Rio de Janeiro
Renato S. Carvalho
Federal University of Rio de Janeiro
Rafael M. Galliez
Federal University of Rio de Janeiro
Terezinha M. P. P. Castineiras
Federal University of Rio de Janeiro
Leonardo H. Travassos
Federal University of Rio de Janeiro
Alberto Nobrega
Federal University of Rio de Janeiro
Amilcar Tanuri
Federal University of Rio de Janeiro
Orlando C. Ferreira Jr.
Federal University of Rio de Janeiro
Leda R. Castilho
Federal University of Rio de Janeiro
Andre M. Vale ( valeam@biof.ufrj.br )
Federal University of Rio de Janeiro
Research Article
Keywords: SARS-COV-2, spike protein ELISA, serological test, dried blood spots, COVID-19 surveillance.
DOI: https://doi.org/10.21203/rs.3.rs-668316/v1
License: This work is licensed under a Creative Commons Attribution 4.0 International License.
Read Full License
1
Development and large-scale validation of a highly accurate SARS-COV-2 serological
test using regular test strips for autonomous and affordable finger-prick sample
collection, transportation, and storage
Renata G. F. Alvim1#, Tulio M. Lima1,2#, Danielle A. S. Rodrigues3,4#, Federico F. Marsili1,5, Vicente B.
T. Bozza3, Luiza M. Higa6, Fabio L. Monteiro6, Daniel P. B. Abreu1, Isabela C. Leitão3, Renato S.
Carvalho7, Rafael M. Galliez8, Terezinha M. P. P. Castineiras8, Leonardo H. Travassos3, Alberto
Nobrega4, Amilcar Tanuri6, Orlando C. Ferreira Jr.6, Leda R. Castilho1,5*, André M. Vale3*,
Federal University of Rio de Janeiro - UFRJ, Brazil: (1) COPPE, Chemical Engineering Program, Cell
Culture Engineering Lab.; (2) School of Chemistry, EPQB Program; (3) Institute of Biophysics Carlos
Chagas Filho, Program in Immunobiology; (4) Institute of Microbiology, Immunology Dept.; (5)
Institute of Chemistry, Biochemistry Program; (6) Biology Institute, Genetics Dept., Molecular Virology
Lab.; (7) School of Pharmacy, Pharmaceutical Biotechnology Dept.; (8) Medical School, Infectious
and Parasitic Disease Dept.
#these authors have contributed equally
*joint senior authors
Corresponding authors: André M. Vale (valeam@biof.ufrj.br) and Leda R. Castilho
(leda@peq.coppe.ufrj.br)
Keywords: SARS-COV-2; spike protein ELISA; serological test; dried blood spots; COVID-19
surveillance.
Abstract
Accurate serological tests are essential tools to allow adequate monitoring and control of COVID-19
spread. Production of a low-cost and high-quality recombinant viral antigen can enable the
development of reliable and affordable serological assays, which are urgently needed to facilitate
epidemiological surveillance studies in low-income economies. Trimeric SARS-COV-2 spike (S)
protein was produced in serum-free, suspension-adapted HEK293 cells. Highly purified S protein was
used to develop an ELISA, named S-UFRJ test. It was standardized to work with different types of
samples: (i) plasma or serum from venous blood samples; (ii) eluates from dried blood spots (DBS)
obtained by collecting blood drops from a finger prick. We developed a cost-effective, scalable
technology to produce S protein based on its stable expression in HEK293 cells. Using this
recombinant antigen, we presented a workflow for test development in the setting of a pandemic,
starting from limited amounts of samples up to reaching final validation with hundreds of samples.
Test specificity was determined to be 98.6%, whereas sensitivity was 95% for samples collected 11
or more days after symptoms onset. A ROC analysis allowed optimizing the cut-off and confirming
the high accuracy of the test. Endpoint titers were shown to correlate with virus neutralization
assessed as PRNT90. There was excellent agreement between plasma and DBS samples,
significantly simplifying sample collection, storing, and shipping. An overall cost estimate revealed
that the final retail price could be in the range of one US dollar. The S-UFRJ assay developed herein
meets the quality requirements of high sensitivity and specificity. The low cost and the use of mailable
DBS samples allow for serological surveillance and follow-up of SARS-CoV-2 vaccination of
populations regardless of geographical and socio-economic aspects. We hope the detailed guidelines
for the development of an affordable and accurate anti-spike SARS-COV-2 ELISA, such as S-UFRJ
described here, will stimulate governmental and non-governmental health agencies in other countries
to engage in much-needed large-scale studies monitoring the spread and immunity to SARS-COV-2
infection.
Funding: CTG, Senai DN/CETIQT, FAPERJ, CNPq, CAPES and Instituto Serrapilheira.
2
Introduction
The COVID-19 pandemic brought an unprecedented global health crisis. The high transmissibility
of SARS-COV-2 caused an avalanche of cases within a short period of time, having caused
approximately more than 130 million cases and 2,8 million deaths as of March 2021. In many cities,
the number of infected individuals needing medical treatment exceeded hospitals capacity, and
healthcare personnel became overwhelmed by the excess of working hours and by adverse mental
health outcomes. In addition to this brutal scenario, the elevated human-to-human contagious rate
obliged a severe restriction of social life including, in some cases, complete lockdown except for
essential activities. As a result, this situation led to economic disruption in many countries
experiencing several months of partial or complete lockdown. If easing of restrictive measures is
unavoidable, it cannot be done without rigorous planning and tight follow-up. Thus, epidemiological
surveillance studies are imperative to measure the spread of the disease and to estimate
seroprevalence, guiding policy decisions regarding the need to keep or ease social distance
measures and to maintain or not other preventive measures.
Accurate serological assays are essential tools for epidemiological surveillance studies to monitor
and control epidemics. The structural spike (S) protein of SARS-COV-2 is known to be a major target
for neutralizing antibodies, thus making it a key antigen for the development of specific and sensitive
sero-diagnostic tests. S protein contains the receptor binding domain in its S1 subunit and is also
responsible for fusion to the cell membrane through its S2 subunit1. Enzyme linked immunosorbent
assays (ELISA) based on the S protein have been developed, showing minimal cross-reactivity with
sera against circulating “common cold” coronaviruses (but some degree of cross reactivity with SARS
and MERS-COV sera)2 and providing correlation to virus neutralizing activity3. However, the current
unavailability of low-cost and high-quality recombinant S protein is a bottleneck for the development
of affordable and reliable serological tests urgently needed by public health agencies, especially in
low-income economies, to deal with the pandemic. Here, we focused on establishing the hallmarks
for a low-cost ELISA based on S protein immunoreactivity, suited to be employed in epidemiological
surveillance studies, evaluation of vaccine immunogenicity, with special relevance for remote regions
and low-income countries with limited clinical laboratory network. Without compromising the
performance of the assay, costs were cut mainly by optimizing antigen production and by simplifying
sample collection and processing. Blood collection by finger prick, using dried blood spots (DBS),
greatly facilitated collection, maintenance, shipping and processing of samples. The overall cost of
the assay was estimated to be approximately one dollar per test.
3
Methods
Stable cell line generation
HEK293-3F6 cells (NRC Canada) growing in suspension in the chemically-defined, animal
component-free HEK-TF (Xell AG) culture medium were stably transfected by lipofection using a
broad-spectrum reagent (Lipofectamine 3000, Thermo Fisher) as described previously4. A total DNA
concentration of 0.9 µg/mL was used, combining two vectors: the pαH vector (at 0.75 µg/mL)
containing the sequence encoding the ectodomain (aminoacids 1-1208) of the spike protein in the
prefusion conformation1 (kindly provided by B. Graham, VRC/NIH, also available from BEI Resources
under #NR-52563), and an empty vector containing the neomycin phosphotransferase gene (at 0.15
µg/mL). Cells were maintained under selection pressure with 100 µg/mL G-418 sulfate (Thermo
Fisher) from 2 days post-transfection on. 24 days post-transfection cell viability had recovered to over
90% viability, and a cell bank was cryopreserved. All steps and materials used during recombinant
cell line generation, expansion and cell banking were documented in detail.
Cell cultivation
After recovery from thawing, stably transfected cells were transferred to the chemically-defined,
animal component-free HEK-GM culture medium (Xell AG) and maintained at 37oC and 5% CO2
under orbital agitation (180 rpm, shaker with 5-cm stroke) in vented Erlenmeyer flasks containing up
to 60% of their nominal volume. In the experiments carried out in fed-batch mode, the culture medium
was supplemented with a concentrated solution of nutrients (HEK-FS, Xell AG) according to the
manufacturer’s instructions. Bioreactor runs were carried out in a 1.5-L stirred-tank bioreactor
(EZControl, Applikon) at setpoints of pH, temperature, and dissolved oxygen of 7.1, 37oC and 40% of
air saturation, respectively. Cell concentration and viability were determined by trypan blue exclusion
using an automated cell counter (Vi-Cell, Beckman Coulter), whereas glucose and lactate
concentrations were monitored using a metabolite analyzer (YSI 2700, Yellow Springs Instruments).
Presence of S protein in the supernatants was determined by spot blots: 3 µL of each sample was
applied to nitrocellulose membranes, serum of SARS-COV-2 convalescent patients (1:1000) was
used as primary antibody, followed by incubation with anti-human IgG(Fc) HRP-labeled antibody
(Sigma, #SAB3701282) and finally addition of chemiluminescent ECL reagent (BioRad). Images were
captured using a FluorChem E system (ProteinSimple), setting exposure time to be automatically
determined based on the samples with strongest signal.
S protein concentration/purification
Cell suspension harvested from cell cultures was clarified by filtration using 0.45-µm PVDF
membranes (Merck Millipore) and used to perform either ultrafiltration/diafiltration (UF/DF) or affinity
chromatography (AC) experiments. Concentration/diafiltration (90-fold concentration by volume) was
4
achieved by UF/DF using centrifugal devices based on cellulose membranes with 100-kDa cut-off
(Merck Millipore). Affinity chromatography was carried out using a 5-mL StrepTrap XT affinity
chromatography column (Cytiva) following manufacturer's instructions. Protein concentration, purity
and identity in the eluted fractions were confirmed by NanoDrop (Thermo Fisher), silver-stained SDS-
PAGE and Western blot analyses, respectively. For Western blots, serum of SARS-COV-2
convalescent patients (1:1000) was used as primary antibody, followed by incubation with anti-human
IgG (Fc) HRP-labeled antibody (Sigma, #SAB3701282) and then chemiluminescent ECL reagent
(BioRad).
S-UFRJ ELISA for anti-S IgG detection
High binding ELISA plates (Corning) were coated with 50 μL of SARS-COV-2 S protein in PBS (Gibco)
at 4 µg/mL concentration (unless otherwise stated in the Figures) and incubated overnight at room
temperature (RT). The coating solution was removed, and 150 μL of PBS 1% BSA (blocking solution)
was added to the plate and incubated at RT for 1-2 hours. The blocking solution was removed, and
50 μL of serum or plasma diluted 1:40 in PBS 1% BSA, and serially three-fold diluted, was added to
the plate and incubated at RT for 2 hours. For ELISA using dried blood spots, at first circles cut from
filter paper using commercially available punching devices, or single filter paper pads cut from plastic
strips were used to prepare eluates by incubating for 1 hour at RT in 100 µL (filter paper circles) or
200 µL (pads) of PBS 1% BSA. In the same way as diluted serum or diluted plasma, 50 µL of eluate
samples were added to the plate and incubated at RT for 2 hours. The plate was then washed five
times with 150 μL of PBS. Next, 50 μL of 1:8000 goat anti-human IgG (Fc) HRP-labeled antibody
(Sigma, #SAB3701282) was added to the plate and incubated for 1.5 hours at RT. The plate was then
washed five times with 150 μL of PBS. At the end, the plate was developed with TMB (3,3',5,5;-
tetramethylbenzidine) (Thermo Fisher). The reaction was stopped with 50 µL of 1 N HCl, and the
optical density (O.D.) was read at 450 nm with 655 nm background compensation in a microplate
reader (BioRad). Results are expressed during test development either as O.D. or O.D. summation5,
and later during application of the final test protocol as the ratio of O.D. of the sample to the cut-off.
Cut-off after optimization by means of the receiver operator characteristic (ROC) analysis was defined
as the sum of O.D. mean of negative controls in the same plate plus 3 times the O.D. standard
deviation of negative controls.
Commercial tests used for comparison to S-UFRJ test
A commercial ELISA to detect anti-SARS-COV-2 IgG produced by Euroimmun (#EI 2606-9601 G)
and a commercial rapid diagnostic test (RDT) with separate bands for IgM and IgG detection were
used following manufacters´ instructions. The RDT is a immunochromatographic test manufactured
by Hangzhou Biotest Biotech Co. and commercialized in several countries/regions, such as Brazil,
Europe, USA and Australia. In Brazil, the brand name of the RDT is MedTeste (Medlevensohn).
5
Sample collection from human subjects
Samples collected at the State Hematology Institute Hemorio followed a protocol approved by the
local ethics committee (CEP Hemorio; approval #4008095). Samples collected at UFRJ COVID
Screening and Diagnostic Center followed a protocol approved by the national ethics committee
(CONEP, Brazil; protocol #30161620000005257; approval #3953368): subjects were initially
interviewed and, if they accepted to participate, they signed the informed consent, answered a
questionnaire (addressing demographic data, onset and type of symptoms, history of travel abroad,
among other information) and had blood (venous blood and/or finger prick) and nasopharyngeal swab
collected. Only symptomatic subjects who presented at least two of the following symptoms were
included: loss of taste or smell, fever, shortness of breath, diarrhea, headache, extreme tiredness,
dry cough, sore throat, runny or stuffy nose, or muscle aches. The protocol approved by the national
ethics committee also covers the collection of samples from vaccinated individuals that had no history
of SARS-CoV-2 infection to study the performance of S-UFRJ assay for evaluation of vaccine
immunogenicity. Dried blood spots (DBS) were obtained by finger pricking with commercially available
sterile lancets and lancing devices. Either plastic strips containing pads of filter paper, or 2.5 cm (W)
x 7.5 cm (L) filter paper with three blood spots from the same volunteer, were used to collect whole
blood from finger pricks. All experimental procedures were conducted in accordance with the relevant
guidelines and regulations.
Plaque reduction neutralization test (PRNT)
In order to determine the titers of neutralizing antibodies in serum samples, sera were first heat-
inactivated at 56°C for 30 min, and two-fold serial dilutions were incubated with 100 PFU of SARS-
COV-2 (GenBank #MT126808.1) for 1 hour at 37°C to enable neutralization to occur. Virus-serum
mixture was inoculated into confluent monolayers of Vero cells seeded in 12-well tissue culture plates.
After 1 hour, inoculum was removed and a semisolid medium (1.25% carboxymethylcellulose in
alpha-MEM supplemented with 1% fetal bovine serum) was added. Cells were further incubated for
72 hours and then fixed with 4% formaldehyde solution. Viral plaques were visualized after staining
with crystal violet dye solution. PRNT end-point titers were expressed as the reciprocal of the highest
serum dilution for which the virus infectivity is reduced by ≥90% (PRNT90) when compared with the
average plaque count of the virus control. All work involving infectious SARS-COV-2 was performed
in a biosafety level 3 (BSL-3) containment laboratory.
Role of the funding sources
6
The funders had no role in study design, data collection, data analysis, data interpretation, or writing
of the report. The corresponding authors had full access to all data in the study and had final
responsibility for the decision to submit for publication.
7
Results
Antigen expression, production and purification
For recombinant production and straightforward purification of a heavily glycosylated protein such
as the SARS-COV-2 spike protein, mammalian cell culture in serum-free media is the option of choice.
We expressed the soluble ectodomain of the spike (S) protein in a stabilized prefusion conformation1
in serum-free, suspension-adapted cell cultures. Initial transient transfections indicated that
expression levels evaluated on days 2 and 4 post-transfection were higher in HEK293 cells than in
CHO-K1 cells (Fig. 1A, left panel). However, differently from previous studies that adopt transient
protein expression techniques3, we focused on stable and constitutive gene expression because
transgene integration in the cell genome enhances scalability and significantly decreases costs of
recombinant protein production in mammalian cells4. Due to the challenges posed by the pandemic,
such as the urgency and the disruption of international supply chains for reagents and synthetic gene
constructs, we decreased time and costs by using an old-fashioned technique of co-transfecting the
plasmid containing the S gene with an intellectual property-free plasmid containing an eukaryotic
selection marker. A stable recombinant HEK293 cell line showing higher expression than transiently
transfected HEK293 cells was generated (Fig. 1A, center panel) and banked 24 days post-
transfection. Stability of S protein expression by this cell line has been proven so far for up to 100
days post-transfection (Fig. 1A, right panel). Hence, confirmation of expression stability is required for
developing cost-saving, long-lasting batch-refeed or perfusion technologies for cell culture.
In order to decrease costs and logistics burden, cell culture media available as dried powdered
media were selected to be tested both in shake flasks and stirred-tank bioreactors at 300-mL and 1.5-
L scale, respectively. The chosen medium (HEK-GM) was able to provide robust cell growth and
efficient recombinant protein production (Fig. 1B). Carrying out cell culture in fed-batch mode by
adding pulses of a concentrated nutrient solution over cell cultivation time avoided nutrient depletion
and significantly increased viable cell density and secreted S protein levels, allowing enhanced
production of the recombinant protein (Fig. 1B, right panel). Protein isolation from cell culture
supernatant was investigated by ultrafiltration/diafiltration (UF/DF) and affinity chromatography (AC)
techniques. In spite of the large S protein size (~170 kDa) and the use of a 100-kDa cut-off membrane
device, UF/DF was not able to efficiently remove all smaller contaminating proteins, and an AC resin
bearing a streptavidin mutein ligand was used to obtain the protein in high purity (Fig. 1C). The affinity
resin has shown a relatively high dynamic binding capacity for the S protein (Fig. 1D), and has so far
been used for 50+ adsorption/elution/regeneration cycles with no detectable decrease in
performance, reducing its impact on the final costs of the purified protein.
8
Early development of the assay from a limited number of samples
Early on in the pandemic in Brazil, March / April 2020, development of the test was started by
using a relatively limited number of samples that were available by then to compare S protein
preparations of lower (UF/DF) or higher purity (AC) for the detection of anti-S antibodies in plasma
samples. Nineteen positive or negative samples, collected from individuals scored as positive by PCR
for SARS-COV-2 (n=16), from a healthy non-infected individual (“post-pandemic negative”, n=1) or
collected before SARS-COV-2 emergence (“pre-pandemic negative”, n=2), were tested for
immunoreactivity against S protein preparations obtained either by UF/DF or AC. Considering the
limited number of samples available at this stage, the threshold value to discriminate between
negative and positive samples was considered as the mean plus 3 standard deviations of O.D. of the
three negative controls added to each plate.
Comparison of the results of the ELISAs carried out with S protein of different purities (UF/DF or
AC) showed that the assay performance could be greatly improved by the use of the highly purified
AC antigen, showing much better discrimination between positive samples and negative controls (Fig.
2A). For comparison, the samples were evaluated also by means of an imported rapid diagnostic test
(RDT), which is approved for commercialization in many countries including Brazil. Interestingly,
sample #1, which was positive by PCR, but negative for IgG by RDT, clearly scored as positive in the
AC S-protein ELISA.
Better discrimination between positive and negative samples enabled by the AC antigen was also
evident in titration curves (Fig. 2B), which were used to calculate the O.D. summation for each sample,
evidencing again the superiority of the highly pure S protein as ELISA antigen (Fig. 2C). Using
selected plasma samples from negative controls and PCR-confirmed patients, we established that a
minimum of 150 ng of high-purity S protein per well (i.e. by coating wells with 50 µL of a 3 µg/mL
antigen solution) enables clear discrimination of positive and negative samples (Fig. 2D). Additionally,
we evaluated antigen lot-to-lot consistency, as well as inter- and intra-operator variability of the ELISA.
Representative data from experiments done by different operators and using different lots of the AC-
purified S protein are shown in Fig. 2E and corroborate the reliability of the recombinant antigen and
of the test as a whole. The ELISA test with AC-purified S protein was named S-UFRJ test.
Late assay development using a broader panel of samples
As broader sample panels became available, a final development of the test was performed. We
applied the S-UFRJ ELISA to evaluate the presence of anti-S IgG in 210 samples, including pre-
pandemic negative controls and samples from symptomatic individuals diagnosed by PCR as positive
for SARS-COV-2. The PCR-positive cohort consisted of 66 samples from 38 symptomatic individuals
whose blood samples were obtained at different time points after symptoms onset. Negative control
samples were collected either until 2018 from healthy individuals (pre-pandemic negative controls,
9
n=124) or in early 2020 from healthy individuals who tested negative for SARS-COV-2 by PCR (post-
pandemic negative controls, n=20), comprising a total of 144 negative control samples.
Results of serological tests are usually interpreted based on the ratio of the O.D. of the given
sample to a pre-established cut-off. Since at this stage of development an optimized cut-off was not
yet available, we adopted a conservative rationale of classifying as undetermined all samples having
an O.D. value between one and two times the mean plus standard deviation (SD) of the O.D. of
negative controls in the same plate. All samples showing an O.D. below the lower threshold value
(mean + 1 SD) were considered negative, and all samples having an O.D. above the higher threshold
value (2*[mean + 1 SD]) were considered positive.
Out of 144 negative control samples, 142 scored as negative, revealing a very high specificity of
the test of 98.6% (Fig. 3A). Interestingly, we have observed that a large fraction of these pre-pandemic
negative samples display immunoreactivity against spike proteins from other “common-cold”
coronaviruses, highlighting the ability of the S-UFRJ assay to discriminate immunity among different
coronaviruses (data not shown).
Considering all samples from PCR-positive individuals, regardless of the time of collection after
symptoms onset, 53 out of 66 samples (80.3%) were IgG positive (Fig. 3A). For comparison, all
samples were also tested for IgG using the RDT, and only 30 out of 66 samples were positive for IgG
(45.5%) (Fig. 3B). In order to gain insight into the samples from symptomatic PCR-positive individuals
that scored negative for anti-S IgG in the S-UFRJ ELISA, samples were grouped as IgM- and IgM+
according to the RDT (Fig. 3C). We found that 14 out of 15 samples that scored negative for anti-S
IgG in our ELISA, also scored as negative for IgM in the rapid test (Fig. 3C). This result suggests that
samples from PCR+ individuals that scored negative for anti-S IgG in our ELISA, may have been
collected in the very beginning of the disease, only a few days after symptoms onset (DASO), and for
that reason also scored negative for IgM in the RDT. Indeed, when the results of S-UFRJ ELISA were
charted against DASO, this was confirmed: samples were increasingly scored as positive for anti-S
IgG according to the time point they had been collected after symptoms onset (Fig. 3D). Accordingly,
PCR+ individuals that have been sequentially sampled on different DASO and scored negative in
their first sampling, later converted to seropositivity for anti-S IgG (data not shown). Anti-S IgG
seroconversion rate, as scored by S-UFRJ ELISA, increased progressively from 41.66% (days 0-4)
to 100% (20+ days) as a function of DASO, being above 90% for all samples collected 10 or more
days after symptoms onset (Fig. 3E). Of note, even for DASO of 20+ days, the RDT reached a
maximum positive rate of 71.4%, whereas the S-UFRJ ELISA scored a rate of 100%. The results
show the superiority of S-UFRJ ELISA when compared to the commercial RDT used for comparison,
with higher sensitivity and earlier detection of seroconversion in PCR-positive symptomatic
individuals.
A previous study using another S protein-based ELISA has observed a correlation between anti-
S or anti-RBD (the receptor binding domain within the S protein) IgG titers and virus neutralization3.
10
To address whether the S-UFRJ ELISA could also bring information about the neutralizing capacity
of positive samples, we compared anti-S IgG titers and virus neutralizing titers. We tested plasma
samples of COVID-19 convalescent donors for their SARS-COV-2 in vitro neutralization capacity as
measured by classic plaque reduction neutralization test (PRNT), using a Brazilian SARS-COV-2
isolate. Importantly, analogously to what has been shown by Amanat and colleagues3, we found that
the higher the anti-S IgG ELISA endpoint titers (Fig. 3F), also the higher the neutralization titers were
(Fig. 3G), resulting in a high correlation between those titers (Pearson’s R=0.9143, p<0.00001).
Hence, S-UFRJ ELISA also provides an important functional correlation with SARS-COV-2
neutralization capacity.
ROC analysis and cut-off optimization
The receiver operator characteristic (ROC) analysis is a standard procedure for assessing
diagnostic performance, since it allows both to evaluate accuracy with no need for a predetermined
cut-off6 and to determine an optimized cut-off value7. Using a sample panel provided by the state
blood bank of Rio de Janeiro (Hemorio) comprising of 420 positive and 68 pre-pandemic negative
samples, a ROC analysis was performed. The ROC curve (Supplementary Fig. S1) revealed a very
high accuracy of the S-UFRJ test as given by an area under the curve (AUC) approaching 1. The
curve was built by determining the sensitivity and specificity of the test for a wide range of cut-off
values, and allowed establishing the optimized cut-off resulting in the best combination of specificity
and sensitivity. The optimized cut-off was determined to be equal to the O.D. mean of the negative
controls in the same plate (also usually known as calibrators) plus 3 times the standard deviation that
was previously determined for a plate full of pre-pandemic negative controls (3*0.016 = 0.048).
Importantly, by establishing an optimized cut-off determined based on a large amount of samples, the
definition of a realistic (instead of conservative) range for undetermined samples became possible.
Thus, for final application of the S-UFRJ test using the optimized cut-off value determined herein, the
recommended range for classification of samples as undetermined is a ratio of O.D. to cut-off between
0.9 and 1.1, as also used by most commercial diagnostic ELISA tests.
Performance validation and comparison to a widely available commercial ELISA assay
To validate S-UFRJ test performance, an additional sample panel comprising of 437 positive
samples from individuals who had tested positive by PCR and were followed over time, providing well-
characterized samples with a wide range of days after symptoms onset (DASO of 0-98 days), was
used. These samples were measured side-by-side by the S-UFRJ ELISA and by a high-reputation
IgG ELISA based on the S1 subunit of the spike protein, which is commercialized worldwide by the
company Euroimmun.
Side-by-side comparison of tests using the same sample panel is important, because sensitivity
data can change a lot according to DASO of samples included in a given panel. We chose to use a
11
sample panel having 17.2% of samples collected at early timepoints (DASO of 0-10 days), when
seroconversion possibly had not yet occurred, in order to get a true insight into performance of both
assays.
As shown in Table 1, the S-UFRJ ELISA allows earlier detection of seroconversion and presents
a greater sensitivity than the Euroimmun S1-ELISA. Considering samples with DASO of 11-98 days,
S-UFRJ sensitivity was 95.0% and Euroimmun sensitivity was 86.5%. If all 437 samples of the panel
are included in the computation (i.e. if early samples with DASO of 0-10 days are also included), then
S-UFRJ sensitivity was 82.4% and Euroimmun sensitivity was 73.7%. Importantly, the higher
sensitivity of the S-UFRJ assay is not achieved at the expense of specificity, since both assays
present very similar specificities (98.6% for S-UFRJ as determined herein, and 98.7% for the
Euroimmun IgG ELISA according to the product package insert).
Simplification of sample collection by using eluates from dried blood spots obtained by finger
prick
The cost per sample of serological assays for COVID-19 is an important aspect concerning large-
scale public health actions, especially in low-income countries. ELISA samples are routinely based
on venous blood collection followed by serum or plasma preparation. This requires clinical laboratory
services, as well as refrigerated sample storage and transport, which would significantly increase the
cost of the S-UFRJ ELISA. More relevant, it would severely limit the usage of the assay for
epidemiological surveillance studies in world regions lacking an appropriate network of clinical
laboratories. To overcome this critical limitation, we evaluated a simple means for storage and
transport of blood samples, by collecting blood drops obtained by finger prick in filter paper, resulting
in dried blood spots (DBS) that enable sampling in remote regions, or regions lacking a laboratory
network. For that, the assay was further standardized to use eluates from DBS (Fig. 4A), a simple,
low-cost and low-complexity method8. Importantly, titration curves of plasma samples, or eluates from
DBS collected in filter paper, displayed comparable results (Figs. 4B and 4C). Additionally, plastic
strips with one or more filter paper pads allowed further precision in sampling and storing for eventual
retesting (Fig. 4D). Consistently, O.D. ratios obtained for plasma samples and DBS, either in filter
paper or in pads, showed very high correlation (Figs. 4E and 4F), as well as high reproducibility
between pads from a given strip (Fig. 4G). Thus, by using dried blood spots, the low cost of the test
was further warranted. We have confirmed that blood samples collected in filter paper and kept in
plastic bags can be preserved for at least 2 months without altering their serological result (data not
shown). Importantly, the elution volume of 200µL used for DBS pads allows up to 4 experiment
replicates per pad. Additionally, as each plastic strip can contain multiple pads, it also permits
additional testing for immunoreactivity against other SARS-COV-2 antigens (e.g. RBD or
nucleocapsid protein), or for cross-reactivity evaluation against related viruses2.
12
Application of the S-UFRJ assay for evaluation of vaccine immunogenicity
Vaccination against SARS-COV-2 infection has already started in several countries including
Brazil. Multiple vaccine preparations using different antigenic preparations and adjuvants are currently
being employed. Phase 3 clinical studies have reported variable effectiveness depending not only on
the vaccine preparation but also on population being addressed. In Brazil, as of march 2021, two
different vaccine preparations are being administered: Coronavac and Astra/Zeneca. The Coronavac
vaccine is based on antigenic preparations from inactivated SARS-COV-2 purified after replication in
VERO cells, in vitro; the substance used as adjuvant is aluminium hydroxide. Compared to other
vaccines, such as those produced by Pfizer, Moderna, Astra/Zeneca and the Sputnik V by the
Gamaleya Institute, the effectiveness of Coronavac was the lowest 15-18. Therefore, the real-time
monitoring of the immunogenicity of vaccination with Coronavac, shortly after administration of the
first and second doses is a key information for the prognostic of the real impact of this vaccine in the
population.
Here we had the opportunity to obtain serum samples from a small cohort of 15 individuals that
have no history of SARS-COV-2 infection and were vaccinated with Coronavac. We have tested these
samples for Ig seroconversion using the S-UFRJ ELISA. For each individual, the surveyal study
contains samples collected on different time points, before and after the first and second doses of the
vaccine. The results revealed that 11 out of 15 individuals developed IgG titers anti-S above the cut-
off after the first dose of the vaccine. Of note, all individuals developed IgG titers anti-S after the
administration of the second dose (Fig. 5). It is interesting to note that the IgG anti-S titers after
vaccination are comparable with the titers presented by asymptomatic patients that recovered from
natural infection (Fig. 4E).
S-UFRJ test costs
Taking into account the simplicity of the DBS method, the overall cost of the S-UFRJ test is
significantly decreased. In terms of raw materials (consumables) needed for collecting samples and
performing the assay, a detailed calculation revealed that consumables costs vary between two and
four USD dimes per test. Two scenarios were considered (Supplementary Table S1): one scenario
considering items sold by international vendors in the country, and the second one considering items
produced locally and adopting other saving measures that we confirmed not to compromise the
performance of the test (data not shown). Based on techniques routinely employed in economic
feasibility studies9, shown in Supplementary Table S2, the final price of the test was estimated by
including in the computation other manufacturing costs (that include labor, utilities, laboratory
charges, insurance, among others) and general expenses (which account for administrative,
research, development, distribution and marketing costs). Costs can vary significantly from country to
country, but we expect that the two scenarios in Tables S1 and S2 can represent most realities
13
reasonably well. The final retail price estimated for the S-UFRJ test from sample collection to test
result is approximately USD 1 per single-well test of the sample.
Discussion
Serological tests for the detection of anti-SARS-COV-2 antibodies are instrumental for
epidemiological surveillance studies in the present COVID-19 global health crisis. Assessing the
spread of SARS-COV-2 with the help of serological assays provides the data input needed for policy
decisions about social distancing and other preventive measures. As discussed for the case of
Spain10, population-based epidemiological studies are a key element to inform authorities about the
need for maintaining public health measures to avoid new epidemic waves, thus allowing scientifically
driven decision making by governments.
Reliable epidemiological data require accurate diagnostic tests. A systematic review and meta-
analysis on serological tests for COVID-19 showed that the evidence on the accuracy of existing
point-of-care lateral flow tests (rapid diagnostic tests - RDT) is particularly weak and does not support
their continued use11. Traditional ELISA tests and chemiluminescent assays showed better
performance11, but depend on collecting venous blood to obtain serum or plasma, thus being
demanding in regard to sample collection, processing, storage and transport. Of note, both these
types of tests are expensive, with retail prices in the range of $50 to $150 being common even in
lower income countries as Brazil. In this context, S-UFRJ ELISA stands out as an instrumental tool
for epidemiological surveillance studies. It combines low cost and simple sample collection by finger
prick/DBS, with the important advantage of a high accuracy, given by a specificity of 98.6% and
sensitivity of 95.0% for samples collected 11 or more days after symptoms onset. The quality of the
assay is warranted by the use of the spike protein, which is less conserved in coronaviruses and thus
less prone to induce cross-reactivity12-13. Moreover, the recombinant, highly purified spike protein
used herein consists of the full-length ectodomain and is produced in the prefusion trimeric
conformation, thus maintaining the most neutralization-sensitive epitopes1 and reliably mimicking the
antigenic properties of the virus upon infection and spread in the organism.
Serological surveillance studies are urgently needed for many reasons, including to establish
priorities for vaccination policies and evaluation of vaccine immunogenicity. In spite of more vaccines
being manufactured and approved for human use, it is expected that a large percentage of the world
population may wait long before being vaccinated because of insufficient industry production. Thus,
monitoring seroprevalence will still remain highly relevant for many years. Considering that most
vaccines under development are based on the spike protein (administered either as protein itself or
as a nucleic acid or viral vector encoding it for in vivo expression), in the future discrimination between
immunity resulting from infection or vaccination could in principle be assessed by using the DBS
eluate volume to perform in parallel the S-UFRJ test and another serological assay using a different
14
viral antigen not present in the vaccine(s) to be approved. Furthermore, it is important to note that
immunity though vaccination may not be long lasting, therefore periodic monitoring of anti-S IgG will
be necessary to evaluate the decline of humoral protection and the need for a new round of
vaccination.
Rapid diagnostic tests are currently in widespread usage around the globe. However, beside their
poor accuracy, their high cost pose a major obstacle for large-scale epidemiological surveillance,
rendering these studies virtually unfeasible in less wealthy nations. In this regard, the S-UFRJ ELISA
test presented a much superior performance when compared to a RDT employed for comparison,
which is broadly commercialized in Brazil and also globally available. S-UFRJ also showed similar or
even better sensitivity when compared to a high-reputation ELISA test produced in Europe and
available globally. Importantly, the S-UFRJ test has an estimated cost of just one US dollar per single-
well evaluation of samples. This is an essential feature of the assay: it can not only enable broad and
reliable serological surveillance in populations, regardless of their geographical and socio-economic
aspects, but can also allow governments to save very significant amounts of financial resources that
could be invested in other types of countermeasures to fight the health and socio-economic
consequences of COVID-19 pandemic14 , with special relevance for low-income countries. The S-
UFRJ assay is being currently used in Brazil in a large-scale serological study involving 10,000
individuals in the state of Rio Grande do Sul (Epicovid-RS)19. This study was only possible to be done
because of the low costs of the assay. We hope the detailed guidelines for the development of an
affordable and accurate anti-spike SARS-COV-2 ELISA, such as S-UFRJ described here, will
stimulate governments and non-governmental health agencies in other countries to engage in similar
large scale studies monitoring the spread and immunity to SARS-COV-2 infection.
Contributors
AMV, LRC and OCFJ had the idea for the study and contributed to study design. RGFA, TML, DASR,
DPBA, OCFJ and AMV were involved in the experiments related to antigen production, assay
development and validation. FFM, VBTB, RSC and LHT gave practical laboratory support and
performed analyses. LMH and FLM performed the virus neutralization assays. ICL, RMG, TMPPC,
OCFJ and AT contributed to sample collection and characterization. LHT, AN, OCFJ, AMV and LRC
contributed to data analysis and interpretation. AN, AMV and LRC wrote the manuscript. LMH, LHT,
RSC, RGFA, TML, AT and OCFJ contributed to a detailed revision of the manuscript.
Declaration of interests
We declare no competing interests.
Acknowledgements
15
Authors gratefully acknowledge Dr. B. Graham and Dr. K. Corbett (VRC/NIAID/NIH, USA) for sharing
the plasmid encoding the S protein gene construct; Prof. E. Durigon (USP, Brazil) for providing the
SARS-COV-2 isolate used in neutralization assays; Dr. S. Garcia and Dr. L. Amorim from Hemorio
for plasma samples; all study participants for donation of blood samples; and the team of volunteers
working in the UFRJ COVID-19 screening center. We thank D. Mucida, C. Lucas and M. Bellio for
critical reading and editing of the manuscript. This work was supported by Senai CETIQT, Senai DN
and CTG, and by the Brazilian research funding agencies Fundação de Amparo à Pesquisa do Estado
do Rio de Janeiro (FAPERJ), Conselho Nacional de Desenvolvimento Científico e Tecnológico
(CNPq), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Instituto
Serrapilheira. DASR was supported by a fellowship from CNPq (DTI-A; 401209/2020-2).
References
1. Wrapp D, Wang N, Corbett KS, et al. Cryo-EM structure of the 2019-nCoV spike in the
prefusion conformation. Science 2020; 367:1260-3.
2. Freeman B, Lester S, Mills L, et al. Validation of a SARS-CoV-2 spike protein ELISA for use
in contact investigations and sero-surveillance. Biorxiv 2020;
https://doi.org/10.1101/2020.04.24.057323.
3. Amanat F, Stadlbauer D, Strohmeier S, et al. A serological assay to detect SARS-CoV-2
seroconversion in humans. Nat Med 2020; 26:1033-6.
4. Alvim RGF, Itabaiana Jr I, Castilho LR. Zika virus-like particles (VLPs): stable cell lines and
continuous perfusion processes as a new potential vaccine manufacturing platform. Vaccine 2019;
37:6970-7.
5. Hartman H, Wang Y, Schroeder Jr HW, Cui X. Absorbance summation: A novel approach for
analyzing high-throughput ELISA data in the absence of a standard. PLoS One 2018; 13:e0198528.
6. Linden A. Measuring diagnostic and predictive accuracy in disease management: an
introduction to receiver operating characteristic (ROC) analysis. J Eval Clin Pract 2006; 12:132-39.
7. Tourinho RS, Amado LA, Villar LM, et al. Importance of the cutoff ratio for detecting antibodies
against hepatitis A virus in oral fluids by enzyme immunoassay. J Virol Methods 2011; 173:169-74.
8. Lim MD. Dried blood spots for global health diagnostics and surveillance: opportunities and
challenges. Am J Trop Med Hyg 2018; 99:256-65.
9. Peters MS, Timmerhaus KD, West RE. Plant Design and Economics for Chemical Engineers,
McGraw-Hill Education, New York, 5th edition, 2003.
16
10. Pollán M, Pérez-Gómez B, Pastor-Barriuso R, et al. Prevalence of SARS-CoV-2 in Spain
(ENE-COVID): a nationwide, population-based seroepidemiological study. Lancet 2020;
https://doi.org/10.1016/S0140-6736(20)31483-5.
11. Bastos ML, Tavaziva G, Abidi SK, et al. Diagnostic accuracy of serological tests for covid-19:
systematic review and meta-analysis. BMJ 2020; 370:m2516.
12. Forcelloni S, Benedetti A, Dilucca M, Giansanti A. Identification of conserved epitopes in
SARS-CoV-2 spike and nucleocapsid protein. Biorxiv 2020;
https://doi.org/10.1101/2020.05.14.095133.
13. Krammer F, Simon V. Serology assays to manage COVID-19. Science 2020; 368:1060.
14. Forbes, April 8, 2020. https://www.forbes.com/sites/williamhaseltine/2020/04/08/pricing-and-
profiteering-from-covid-19-tests/#fca18f01ccbc
15. Fernando P Polack et al. Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine
Clinical Trial N Engl J Med 2020 Dec 31;383(27):2603-2615. doi: 10.1056/NEJMoa2034577.
16. Lindsey R Baden et al. Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine. N Engl J
Med. 2021 Feb 4;384(5):403-416. doi: 10.1056/NEJMoa2035389.
17. Merryn Voysey, DPhil at al.. Safety and efficacy of the ChAdOx1 nCoV-19 vaccine (AZD1222)
against SARS-CoV-2: an interim analysis of four randomised controlled trials in Brazil, South Africa,
and the UK Lancet. 2021 Jan 9;397(10269):99-111. doi: 10.1016/S0140-6736(20)32661-1
18. Peter English. Expert reaction to announcement of results of phase III of Sinovac vaccine in
China. https://www.sciencemediacentre.org/expert-reaction-to-announcement-of-results-of-phase-iii-
of-sinovac-vaccine-in-china.
19. http://www.epidemio-ufpel.org.br/site/content/sala_imprensa/noticia_detalhe.php?noticia=3191
17
Figure 1: S protein production by stable recombinant HEK293 cells and its purification from
cell culture supernatant. (A) Left panel: CHO-K1 and HEK293-3F6 were transiently transfected with
plasmid DNA containing the S protein gene. Center panel: due to the higher levels of protein secreted
by HEK293 cells, this cell line was used in transient transfections at high (H, 2 µg/mL of pαH plasmid)
and low (L, 0.75 µg/mL of pαH plasmid) DNA concentration, as well as in a stable transfection that
comprised co-transfection of a second vector containing the neo selection marker. A well documented
cell bank was cryopreserved on day 24 post-transfection. Right panel: stability of expression of the
18
secreted protein has been confirmed so far for up to 100 days post-transfection. (B) Left panel: high
cell viabilities and viable cell densities (VCD) were achieved in the cultivation of the stable cell line in
shake flasks and 1.5-L stirred-tank bioreactors, in batch and fed-batch mode, using chemically-
defined, animal component-free media. Right panel: spot blot for detection of S protein in the cell
culture supernatant on different days of culture, showing high titers of secreted S protein. (C) S protein
identity was confirmed by Western blot analysis, confirming the molecular mass of approximately 180
kDa. SDS-PAGE showed a rather low purity for the concentrated/diafiltered (UF/DF) sample, but a
very high purity for the sample purified by affinity chromatography (AC). 1: Cell culture supernatant
from non-transfected parental HEK293-3F6 cells. 2: Molecular-mass standard containing proteins at
250, 150, 100 and 75 kDa. 3: UF/DF sample after 90-fold volumetric concentration and buffer
exchange into PBS. 4. Eluate from affinity chromatography. 5. Supernatant from stable recombinant
cell line. Two pictures were taken of the membrane in the same position and overlapped. One with
white light to see the MW standard and the other capturing the chemiluminescence emitted by the
reaction of the HRP with the luminol reagent. (D) A typical chromatogram of the affinity
chromatography purification. Fractions of the flow-through (fr1 to fr8) were collected during sample
injection and analyzed by spot blot to evaluate progressive saturation of affinity ligands, showing a
high binding capacity and a low degree of S protein leakage. For comparison, spot blots of the injected
cell culture supernatant, or a 1:10 dilution, are shown in the box above the chromatogram. In all
immunoblots, presence of S protein was detected using a pooled serum of SARS-COV-2
convalescent patients (1:1000) as primary antibody, followed by incubation with anti-human IgG-HRP
and chemiluminescent detection.
19
Figure 2: Comparison of ELISAs with UF/DF- or AC-purified S protein. (A) ELISA performance
using low-purity (UF/DF) or high-purity (AC) S protein antigen to coat plates. A total of 22 samples
were used: 15 sera from COVID-19 convalescent patients (SARS-COV-2 samples, open circle), two
control samples collected until 2018 (pre-COVID-19, yellow diamond), one post-COVID-19 control
sample from a healthy individual, two samples from SARS-COV-2 infected individuals characterized
as PCR+/RDT- (#1 light gray filled circle, #2 dark gray filled circle), and one sample from a SARS-
COV-2 convalescent patient who had the severe form of the disease (#3, red square). The cut-off for
antigen evaluation was defined as [mean + 3 standard deviations (X+3SD)] of the O.D. of negative
controls. (B) Samples used in (A) were titrated in four serial dilutions (1:40, 1:120, 1:360 and 1:1080),
both for UF/DF or AC ELISA. (C) O.D. summation of the titration curves shown in (B); symbols as in
(A). (D) Samples used in (A) were titrated in four serial dilutions (1:40, 1:120, 1:360 and 1:1080) for
AC ELISA using different S-protein coating concentrations (0.3 – 10 µg/mL, corresponding to 15 –
500 ng/well). (E) Three selected samples from (D) were diluted 1:40 to evaluate antigen lot-to-lot
consistency, inter- and intra-operator variability of the AC ELISA. Representative data from 3
experiments using 3 different lots of the AC-purified S protein (lots A to C) are shown. Experiment
with lot A was performed by one operator, and a second operator performed experiments with lots B
and C.
BUF/DF AC
Reciprocal dilution
Absorbance (λ450)
O.D. sum (λ450)
40
120
360
1080
0
1
2
3
4
cut-off
40
120
360
1080
0
1
2
3
4
cut-off
0.1
1
10
100
cut-off
0.1
1
10
100
cut-off
500ng/well
40
120
360
1080
0
1
2
3
4
Absorbance (λ450)
D
40
120
360
1080
0
1
2
3
4150ng/well
40
120
360
1080
0
1
2
3
450ng/well
40
120
360
1080
0
1
2
3
4
post-pandemic neg
pre-pandemic neg
(PCR+/RDT-) #1
(PCR+/RDT-) #2
(PCR+/RDT+) #3
15ng/well
C
0.1
1
10
cut-off
Absorbance (λ450)
AUF/DF
0.1
1
10
cut-off
UF/DF ACAC
Reciprocal dilution
pre-pandemic neg
post-pandemic neg
(PCR+/RDT-) #1
(PCR+/RDT-) #2
(PCR+/RDT+) #3
SARS-CoV-2 samples
pre-pandemic neg
post-pandemic neg
(PCR+/RDT-) #1
(PCR+/RDT-) #2
(PCR+/RDT+) #3
SARS-CoV-2 samples
pre-pandemic neg
post-pandemic neg
(PCR+/RDT-) #1
(PCR+/RDT-) #2
(PCR+/RDT+) #3
SARS-CoV-2 samples
pre-pandemic neg
post-pandemic neg
(PCR+/RDT-) #1
(PCR+/RDT-) #2
(PCR+/RDT+) #3
SARS-CoV-2 samples
pre-pandemic neg
post-pandemic neg
(PCR+/RDT+) #3
0.0
0.5
1.0
1.5
2.0
2.5
Lot B
Lot C
Lot A
E
Absorbance (λ450)
20
Figure 3: Validation of S-UFRJ ELISA, which comprises the AC-purified antigen, for early
detection and quantification of anti-S IgG serum antibodies. (A) Anti-S IgG antibody detection in
samples from healthy individuals, obtained as pre-pandemic controls (n=124, yellow diamond) or
post-pandemic controls from individuals who tested negative for the virus by PCR (n=20, open
square), and samples from COVID-19 patients who were PCR-positive (n=66, open circle). Relative
levels of antibodies are shown as O.D. ratio of values of individual samples to the [mean + 1 standard
deviation (X+1SD)] of the O.D. average of the negative controls in the same ELISA plate. Sera
samples were routinely diluted at 1:40. For this stage of development of the assay, it was
conservatively established that an O.D. ratio below 1 indicates a negative result (N), an O.D. ratio
above 2 indicates a positive result (P), and an O.D. ratio between 1 and 2 is considered undetermined
(U). (B) The PCR-positive samples shown in (A) were tested for anti-SARS-COV-2 IgG by a
commercial rapid diagnostic test (RDT) (MedTeste, Medlevensohn, Brazil, imported from Hangzhou
Biotest Biotech Co.). Samples were then grouped by IgG reactivity according to the RDT result (RDT
IgG-, open circle; RDT IgG+, red filled circle), and their anti-S IgG levels measured by the S-UFRJ
ELISA are plotted. (C) Anti-S IgG levels measured by the S-UFRJ ELISA for the RDT IgG-negative
samples shown in (B), grouped according to the RDT IgM result as RDT IgM- (open circle) or RDT
IgM+ (open red circle). (D) Levels of anti-S IgG in samples grouped according to the timepoint of
sample collection given in days after symptoms onset (DASO); symbol legends are indicated in the
figure. (E) Positive rates versus DASO for anti-S IgG measured by S-UFRJ ELISA (open circle), for
A
EG
0
20
40
60
80
100
0-4
5-9
10-14
15-19
20+
Days after symptoms onset
Positive rate (%)
S-UFRJ IgG
RDT IgG
RDT IgM
F
Absorbance (λ450)
SARS-CoV-2 samples
Lowest titer sample
Highest titer sample
P
U
N
pre-pandemic
neg
PCR-
PCR+
0.01
0.1
1
10
100
C.O.
S-UFRJ IgG-ELISA
(O.D. ratio)
C
S-UFRJ IgG-ELISA
(O.D. ratio)
B
0.1
1
10
100
C.O.
0.1
1
10
100
C.O.
S-UFRJ IgG-ELISA
(O.D. ratio)
P
U
N
P
U
N
10
100
1,000
10,000
100,000
0
1
2
3
4
C.O.
Reciprocal dilution
1
10
100
1,000
10,000
100,000
0.1
1
10
100
1,000
10,000
Endpoint titer
PRNT90
R = 0.9143
p < 0.00001
Days after symptoms onset
D
0-4
5-9
10-14
15-19
20-24
>24
0.1
1
10
100
C.O.
S-UFRJ IgG-ELISA
(O.D. Ratio)
RDT Ig- RDT IgG+RDT IgM+
P
U
N
RDT IgG-
RDT IgG+
RDT IgM-
RDT IgM+
21
IgM measured by RDT (open red circle) and for IgG measured by RDT (red filled circle). (F) S-UFRJ
IgG titration of 16 samples from COVID-19 convalescent patients (SARS-COV-2 samples); samples
with the highest and lowest endpoint titer of the group are indicated in solid red and solid black colors,
respectively. (G) Correlation between S-UFRJ ELISA IgG endpoint titers and neutralization (PRNT90)
for samples titrated in (F) (n=16). Three samples with PRNT90 values <10 are plotted as 1. Statistical
analysis was performed using Pearson’s test.
22
Figure 4: S-UFRJ test optimization for sample collection amenable for field studies. (A) Dried
blood spots (DBS) obtained by finger pricking with commercially available lancing devices: a 2.5 cm
(W) x 7.5 cm (L) filter paper with three blood spots from the same volunteer and a commercially
available paper hole punching device were used to prepare a DBS disk (arrowhead) from which blood
was eluted for ELISA testing. (B) S-UFRJ ELISA comparing the O.D. values for plasma samples in
increasing serial dilutions and for the corresponding eluates prepared by incubating the DBS disks in
increasing volumes of buffer. (C) O.D. summation of the data shown in (B). (D) Dried blood spots
collected in plastic strips containing 1, 2 or 3 pads of filter paper. (E-G) correlations of O.D. ratios
between samples collected in the strip pad 1 and either the respective plasma sample (E), the
respective DBS in filter paper (F), or the second pad of the same strip (G). In E-G, plasma dilution
was 1:40, DBS in filter paper disks were eluted in 100 µL of PBS 1% BSA, and DBS in single pads
were eluted in 200 µL PBS 1% BSA. Statistical analysis was performed using Pearson’s test.
0.1 1 10
0.1
1
10
0.1 1 10
0.1
1
10
0.1 1 10
0.1
1
10
A
Absorbance (λ450)
B
DE F G
40
120
360
1080
0
1
2
3
4
100
300
900
2700
0
1
2
3
4
Elution volume (µL)
Plasma DBS filter paper
0
5
10
15
Individual
samples
O.D. sum (λ450)
C
Plasma samples
DBS filter paper
R = 0.9684
p < 0.0001
R = 0.9733
p < 0.0001
Pad 1 (O.D. ratio)
R = 0.9265
p < 0.0001
Pad 1
Pad 2
Plasma (O.D. ratio)
Pad 1 (O.D. ratio)
DBS filter paper (O.D. ratio)
Pad 1 (O.D. ratio)
Pad 2 (O.D. ratio)
Reciprocal dilution
23
Figure 5: S-UFRJ test applied to periodic monitoring of anti-S IgG antibodies following
vaccination. Dried blood spots were collected in plastic strips containing three pads of filter paper.
For each vaccinated individual (V01 to V15), DBS were collected on different time points, before and
after the first and second doses of the vaccine, indicated by the red arrows.
P
U
N
-51
0
6
18
28
33
41
48
0.1
1
10
P
U
N
P
U
N
P
U
N
P
U
N
P
U
N
P
U
N
P
U
N
-51
0
9
18
21
28
33
41
0.1
1
10
Days
V01
S-UFRJ IgG-ELISA
(O.D. Ratio)
V02
P
U
N
V04
P
U
N
V05V03
Days
0
18
20
28
41
0.1
1
10
Days Days Days
0
6
28
41
0.1
1
10
Days
V06
S-UFRJ IgG-ELISA
(O.D. Ratio)
-51
0
20
28
33
41
0.1
1
10
V07
Days
V08
Days
-52
0
20
28
33
0.1
1
10
V09
Days
0
20
28
33
0.1
1
10
V10
Days
P
U
N
P
U
N
P
U
N
P
U
N
P
U
N
Days
V11
S-UFRJ IgG-ELISA
(O.D. Ratio)
V12
Days
V13
Days
V14
Days
V15
Days
0
21
28
41
0.1
1
10
-43
0
20
28
33
41
0.1
1
10
-45
0
11
21
28
33
0.1
1
10
C.O.
C.O.
C.O.
0
6
18
28
33
41
49
0.1
1
10
0
6
28
41
48
0.1
1
10
-43
0
20
28
33
48
0.1
1
10
-52
0
20
28
33
41
0.1
1
10
-190
0
20
28
48
0.1
1
10
24
Table 1. Evaluation of the S-UFRJ ELISA and of an IgG ELISA commercialized by the company
Euroimmun. A panel of 437 samples from PCR-positive individuals who were followed along time
was used. For S-UFRJ data analysis, the final optimized assay parameters were adopted (cut-off
equal to mean + 3*SD, and O.D. ratio interval of 0.9-1.1 for undetermined samples). For the
Euroimmun ELISA, test was carried out according to manufacturer’s instructions.
Days after
symptoms
onset
(DASO)
Number of
samples
S-UFRJ ELISA
Euroimmun ELISA (S1 protein)
Number of
positive samples
Sensitivity
(%)
Number of
positive samples
Sensitivity
(%)
00-05
33
3
9.1
1
3.0
06-10
42
13
31.0
8
19.0
11-15
83
70
84.3
53
63.9
16-20
62
59
95.2
53
85.5
21-25
56
54
96.4
50
89.3
26-30
54
54
100.0
53
98.1
31-98
107
107
100.0
104
97.2
11-98
362
344
95.0
313
86.5
All (0-98)
437
360
82.4
322
73.7