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The spread of drug resistance in P. vivax vs. P.falciparum malaria – the effect of hypnozoites

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Abstract

Abstract: Despite the efforts to control malaria, it still remain one of the major challenges to global development. The spread of drug-resistance of malaria parasites is a serious threat to global health. While this problem is widespread and urgent in P. falciparum malaria, it is less present in P. vivax malaria. Here, we introduce a population-genetic model for the evolutionary dynamics of anti-malaria drug-resistance. The model incorporates relapses of dormant parasites as they occur in P. vivax and P. ovale, and it is applicable to all human pathogenic-malarial species. Importantly, the effects of the distribution on evolutionary dynamics of drug-resistance are studied. Finally, we show and explain how the presence of dormant hypnozoites in P. vivax and P. ovale delays the evolutionary process underlying drug-resistance in P. vivax compared to P. falciparum malaria
@MalariaMath
1192 The spread of drug resistance in P. vivax vs. P. falciparum malaria –
the effect of hypnozoites
Sulyman Iyanda, Kristan A. Schneider
Hochschule Mittweida, University of Applied Sciences
Abstract
Background: Despite the efforts to control and eradicate malaria worldwide, it remains one of the major chal-
lenges to global development. The use of anti-malaria drugs still is the keystone in malaria control and prevention.
However, the spread of drug-resistance in P. falciparum is a serious threat. While many drugs became ineffective
to treat P. falciparum malaria, drug-resistance is uncommon in P. vivax malaria. It has been argued that differen-
cies in the life-histories of the two species, deftermining fitness-components lead to a more effective mechanism
selecting for resistance in P. falciparum . These include in particular the onset of gametocytogenesis and the
longevity of gametocytes. The presence of hypnozoites in P. vivax is a further life-history differfence that has not
been taken into account yet.
Methods: A population-genetic model for the evolutioinary dynamics of anti-malaria drug resistance, that explic-
itly incorporates the sleeping sporozoites in the liver, hypnozoites which make it more general and applicable to
every woman pathogenic malaria species.
Results: By implemeting the model with simulation, it displays how the presence of dormant hypnozoites delays
the evolutionary process underlying drug-resistance in P. vivax compared with P. falciparum. Moreover, the
presence of hypnozoites (and hence relapses) does not affect the fitness driving drug resistance, but only delays
the evolutionary dynamics.
Conclusions: There is need to take into consideration, species specific life history for an effective malaria control
and eradictaion programes. Specificaly, to nullify the challengies being facing when dealing with p.vivax malaria.
The model per se is applicable to all malaria species.
1. Introduction
What triggers the slower spread of Drug resistance in P. vivax compared to P. falciparum?
Drug resistance evolutionary process;
Primaquine, Hypnozoites Drug restricted by G6PD defficiency;
Drugs with resistance:
Chloroquine remains choice to combat P. vivax;
Sulfadoxine-pyrimethamine;
Artemisinin increase concern;
Mefloquine.
Different life history:
Onset of gametocytogenesis;
Longevity of gametocytes;
Dormant parasites, Hypnozoites, in the liver.
Hypothesis: Hypnozoite, a further life history is responsible for slower spread in P.vivax ;
Transmission cycle:
Similar for all plasmodium species Different life-stage mophology of parasites;
2-non-overlaping stages: Asexual/Sexual.
2. Assumptions
Simple special case model for illustration;
4-haplotypes formed by 2 bi-allelic loci, a selective and neutral;
A selective locus with two alleles Asand Arfor sensitive and resistant, respectively;
Initial frequency of Ar, p0=1
pop.size ,ptfrequency of Arin generation t;
Host heterogeneity host falling into particular discrete strata;
One parasite haplotype drop to the host by individual vector;
Fitness is time independent.
3. Evolutionary Dynamic
Fitness: Probability of sporozoites having gametocyte
offsprings, picked up by mosquito:
wsand wrare average fitness of sensitive and
resistant alleles, As, Arrespectively;
Fitness Parameters:
cMetabolic cost;
dsEffect of drug on fitness of As;
drEffect of drug on fitness of Ar.
Naturally: ds> dr;
wr/wsin p. falciparum is greater than wr/wsin
p.vivax;
sSelection coefficient, 1 + s=wr
ws
;
Selection is vary in each class Treated/untreated
Fitness Determined by allele at selected locus;
Χ
Χ
Χ
Χ
Χ
Χ
Χ
Χ
haplotype reservoir
mosquito stage human stage mosquito stage
1-α
α
1-α
α
qa relapses from generations t-1, t-2,... q0 infections from generation t
haplotype distributions
from prev. generations
haplotype reservoir
haplotype distributions
from prev. generations
p1(t)
p3(t)
p2(t)
p4(t)
p1(t-a)
p2(t-a)
p3(t-a)
p1(t-a)
p2(t-a)
p3(t-a)
p4(t-a)
p4(t+1)
p3(t+1)
p2(t+1)
p1(t+1)
p4(t-a)
p1(t)
p3(t)
p2(t)
p4(t)
p1(t-a)
p2(t-a)
p3(t-a)
p1(t-a)
p2(t-a)
p3(t-a)
p4(t-a)
p4(t+1)
p3(t+1)
p2(t+1)
p1(t+1)
p4(t-a)
untreated
treated
untreated
treated
Fig1: Model Idealization
Relapse:
Various period of time Weeks, months or even
years;
No specific distribution;
Absence of vector does not matter.
Multiplicity of infection (MOI, cf. Fig. 2):
Dynamics is independent on MOI;
Absence of co-infection but Super-infection.
w(T)
1w(T)
2w(U)
1w(U)
2
(1 c)(1 dr) 1 ds1c1
Table1: Fitness scale
recomb. generates
new genetic variation
eectively no recomb.
single infection (MOI=1)
x
4 super-infections (MOI=4)
vector-host transmission infection host-vector transmission
& recombination
x
x
Fig2: MOI vs inbreeding
4. Dynamics of P. vivax/P. falciparum
Evolutionary dynamics depends on wr/wsand
p0=1
pop.size :
Earlier gametocytogenesis in p.vivaxinitially
more gametocytes from sensitive than resistant
merozoites;
Slower spread in p. vivax, due to smaller fitness
ratio wr/ws.
qaProportion of infection relapse from agenera-
tions. in the past (a= 1, . . . , A);
q0Probability. of new infection in gen. t;
Frequency change (cf. fig.1);
pt+1 =
wr
A
X
a=0
qap(ta)
wr
A
X
a=0
qap(ta)+ws 1
A
X
a=0
qap(ta)!.(1)
If
A
X
a=0
qa= 1 . . .,vivax dynamics (1) reduce to Falci-
parum (2);
0 2000 4000 6000 8000 10000
0.0 0.2 0.4 0.6 0.8 1.0
generations
frequency of resistance
P. vivax 80% relapses
P. vivax 60% relapses
P. vivax 40% relapses
P. vivax 20% relapses
P. falciparum no relapse
Fig3: Effect of selection coefficient/ relapses
Frequency change, generation tt1:
pt+1 =wrpt
wrpt+ws(1 pt).(2)
Numerical examples presented;
Illustration of effects of relapses (cf. fig.4 & 5);
A sufficiently small initial frequency considered;
First resistant parasite occurs in generation 0;
Dynamics depend on:
Relapse proportion;
Frequency in present/previous generations;
Averagee fitness.
Generation time (t, discrete) 6=real time;
Low transmission area larger initial frequency
/more relapses.
0 2000 4000 6000 8000 10000
0.0 0.2 0.4 0.6 0.8 1.0
generations
frequency of resistance
P. vivax 80% relapses
P. vivax 60% relapses
P. vivax 40% relapses
P. vivax 20% relapses
P. falciparum no relapse
Fig4: Effect of initial freq. p0/ relapses
5. Conclusions/Discussion
Model acounts for relapsestailored to p. vivax and p. ovale, hence applicable to other plasmodium species;
Effects of the proportion of relapses from previous generations are clearly visible;
Initial frequency of mutant alleles, positively correlated to delay of the dynamics but not the case for selection
coeficient;
Relapses slow-down the spread of resistance as they act as a "seed bank" that brings back the frequency
distribution of the previous generations in the future Hypnozoites;
Time-average of the past generations responsible for the slow-down of the evolutionary dynamics in P. vivax.
Acknowledgements
This research was supported by grants from the DAAD (“Mathematics against malaria within the AIMS network”, project-ID
57417782), DFG (“Ökologisch nachhaltige Wertschöpfungsketten in in der Landwirtschaft durch Optimierung des Insektizid-
Gebrauchs aufgrund von automatisiertem Schädlings-Monitoring”), and the SMWK (“Vorlaufforschung Technologieentwick-
lung 4.0”).
Reference
[1] K. SCHNEIDER,Charles darwin meets ronald ross - a population-genetic framework for the evolutionary dynamics of
malaria, Submitted, (2019).
[2] SCHNEIDER K. A, ESCALANTE A. A. Fitness components and natural selection: why are there different patterns on the
emergence of drug resistance in Plasmodium falciparum and Plasmodium vivax?, Malaria journal. 2013;12(1):15.
Contact
Sulyman Iyanda
University of Applied Sciences, Mittweida
Technikumplatz 17, 09648, Mittweida, Germany
e-mail: siyanda@hs-mittweida.de
Prof. Dr. Kristan A. Schneider
University of Applied Sciences Mittweida
Technikumplatz 17, 09648, Mittweida, Germany
e-mail: kristan.schneider@hs-mittweida.de
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Article
Full-text available
Background Considering the distinct biological characteristics of Plasmodium species is crucial for control and elimination efforts, in particular when facing the spread of drug resistance. Whereas the evolutionary fitness of all malarial species could be approximated by the probability of being taken by a mosquito and then infecting a new host, the actual steps in the malaria life cycle leading to a successful transmission event show differences among Plasmodium species. These “steps” are called fitness components. Differences in terms of fitness components may affect how selection imposed by interventions, e.g. drug treatments, differentially acts on each Plasmodium species. Thus, a successful malaria control or elimination programme should understand how differences in fitness components among different malaria species could affect adaptive evolution (e.g. the emergence of drug resistance). In this investigation, the interactions between some fitness components and natural selection are explored. Methods A population-genetic model is formulated that qualitatively explains how different fitness components (in particular gametocytogenesis and longevity of gametocytes) affect selection acting on merozoites during the erythrocytic cycle. By comparing Plasmodium falciparum and Plasmodium vivax, the interplay of parasitaemia and gametocytaemia dynamics in determining fitness is modelled under circumstances that allow contrasting solely the differences between these two parasites in terms of their fitness components. Results By simulating fitness components, it is shown that selection acting on merozoites (e.g., on drug resistant mutations or malaria antigens) is more efficient in P. falciparum than in P. vivax. These results could explain, at least in part, why resistance against drugs, such as chloroquine (CQ) is highly prevalent in P. falciparum worldwide, while CQ is still a successful treatment for P. vivax despite its massive use. Furthermore, these analyses are used to explore the importance of understanding the dynamic of gametocytaemia to ascertain the spreading of drug resistance. Conclusions The strength of natural selection on mutations that express their advantage at the merozoite stage is different in P. vivax and P. falciparum. Species-specific differences in gametocytogenesis and longevity of gametocytes need to be accounted for when designing effective malaria control and elimination programmes. There is a need for reliable data on gametocytogenesis from field studies.
Chapter
Malaria is a resilient disease characterized by complex life histories of the pathogen and the vector, and still is a major threat to global development. We introduce a population-genetic framework for the evolutionary processes, exemplified but not restricted to anti-malarial drug resistance, which accurately incorporates malaria transmission. In particular, the dynamics of resistance-conferring mutations and their impact on neutral genetic variation (genetic hitchhiking) are modeled. It is shown that the processes of selection and recombination cannot be separated as in standard population-genetic models. Indeed the interplay of selection and recombination is mediated by multiplicity of infection (MOI), i.e., the number of (super-) infections within the course of the disease. Importantly, the extent of genetic hitchhiking (or, equivalently, linkage disequilibria) around resistance-conferring alleles crucially depends on MOI. The advantage of the framework is that vector dynamics and intra-host dynamics do not need to be modeled explicitly. Vector dynamics enter the model via MOI, while intra-host dynamics are subsumed by fitness parameters. Complementary models can be incorporated to elucidate the mechanisms underlying these parameters. In particular, it is shown how MOI and selection parameters can be estimated from molecular data. Furthermore, we discuss how the parasite’s life history inside the host translates to evolutionary fitness. These considerations explain why anti-malarial drug-resistance evolution is faster in P. falciparum than in P. vivax.