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The role of dual-use gain-of-function research in SARS-CoV-2 origin

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Abstract

Gain-of-function research involves experimentation that aims or is expected to (or actually does) increase the transmissibility and/or virulence of pathogens. Such research aims to improve understanding of disease causing agents, their interaction with human hosts, and their potential to cause pandemic, but can also pose risks regarding biosecurity and biosafety. Despite claims from prominent scientists that SARS-CoV-2 emerged naturally, there is still open question about the true origin of the virus because the intermediate host necessary for completing a natural zoonotic jump is not indubitably identified and the dual-use gain-of-function research practice that mimics natural zoonotic jump in laboratory can be considered a viable route by which the novel coronavirus arose. Further independent and unbiased research is mandatory.
1
The role of dual-use gain-of-function research in SARS-CoV-2 origin
Domina Petric, MD
Gain-of-function research involves experimentation that aims or is expected to (or actually
does) increase the transmissibility and/or virulence of pathogens. Such research aims to
improve understanding of disease causing agents, their interaction with human hosts, and
their potential to cause pandemic, but can also pose risks regarding biosecurity and
biosafety. Despite claims from prominent scientists that SARS-CoV-2 emerged naturally,
there is still open question about the true origin of the virus because the intermediate host
necessary for completing a natural zoonotic jump is not indubitably identified and the dual-
use gain-of-function research practice that mimics natural zoonotic jump in laboratory can be
considered a viable route by which the novel coronavirus arose. Further independent and
unbiased research is mandatory.
Gain-of-function (GOF) research
involves experimentation that aims or is
expected to (and/or, perhaps, actually does)
increase the transmissibility and/or
virulence of pathogens. Such research,
when conducted by responsible scientists,
usually aims to improve understanding of
disease causing agents, their interaction
with human hosts, and/or their potential to
cause pandemics. The ultimate objective of
such research is to better inform public
health and preparedness efforts and/or
development of medical countermeasures.
Despite these important potential benefits,
GOF research can pose risks regarding
biosecurity and biosafety
1
.
Karl and Dan Sirotkin explained in their
article that despite claims from prominent
scientists that SARSCoV2 indubitably
emerged naturally, the etiology of this
novel coronavirus remains a pressing and
open question: without knowing the true
nature of a disease, it is impossible for
clinicians to appropriately shape their care,
for policymakers to correctly gauge the
nature and extent of the threat, and for the
public to appropriately modify their
behavior. Unless the intermediate host
necessary for completing a natural
zoonotic jump is identified, the dualuse
gainoffunction research practice of
viral serial passage should be considered
a viable route by which the novel
coronavirus arose. The practice of serial
2
passage mimics a natural zoonotic jump,
and offers explanations for SARSCoV2's
distinctive spikeprotein region and its
unexpectedly high affinity for
angiotensin converting enzyme (ACE2),
as well as the notable polybasic furin
cleavage site within it
2
.
The longstanding practice of serial
passage is a form of gainoffunction
research that forces zoonosis between
species, and requires the same molecular
adaptations necessary for a natural
zoonotic jump to occur within a laboratory,
leaving the same genetic signatures behind
as a natural jump but occurring in a much
shorter period of time.
Researchers further explain:
The genetic signatures in question includes
two distinctive features possessed by
SARSCoV2's spikeprotein: the unique
sequence in the receptor binding domain
(RBD), a region known to be critical for
SARSCoV2's utilization of human
angiotensin converting enzyme (ACE2),
which is the cell surface receptor used by
both SARSCoV and SARSCoV2 for
fusion with target cells and subsequent cell
entry. The second feature is the presence of
a polybasic furin cleavage site, which is
also known as a multibasic cleavage site
(MBS)—a four amino acid insertion with
limited sequence flexibility—within the
coronavirus's novel spikeprotein, that is
not found in SARSCoV or other lineage B
coronaviruses. This furin cleavage site,
which is poly or multibasic by definition
since its composed of multiple basic amino
acids, is an important virulence feature
observed to have been acquired by fusion
proteins of avian influenza viruses and
Newcastle Disease Virus either grown
under experimental conditions or isolated
from commercial animal farms—settings
that mimic the conditions of serial
laboratory passage (pseudo-natural origin).
Jean-Claude Perez wrote in his article
that the main result of his updated release
is the formal proof that 2019-nCoV
coronavirus is partially a SYNTHETIC
genome. Author proofs the concentration
in a small region of Wuhan New genome
(300bp) of 3 different regions from HIV1
ENVELOPPE gene and 3 others from
HIV2 and SIV (ENV and POL RT)
3
.
Similar opinion has French Nobel Prize-
winning virologist Luc Montagnier who
believes that the COVID-19 was developed
in a laboratory in the Chinese city of
Wuhan and that the presence of elements
of HIV in the genome of the coronavirus is
highly suspect
4
.
3
CONCLUSION
Despite that the mainstream opinion in
science today is that SARS-CoV-2 is
indubitably natural virus, the role of dual-
use gain-of-function research in the origin
of this virus cannot be completely
excluded and further independent and
unbiased research is mandatory.
REFERENCES
1. Selgelid MJ. Gain-of-Function Research: Ethical
Analysis. Sci Eng Ethics. 2016;22(4):923-964.
2. Sirotkin K, Sirotkin D. Might SARS-CoV-2
Have Arisen via Serial Passage through an Animal
Host or Cell Culture? BioEssays. 2020. DOI:
10.1002/bies-202000091
3. Perez JC. Wuhan COVID-19 synthetic origins
and evolution. Science. 2020; 8(2): 285-324.
4. Pavlovska E. Nobel winning scientist says
COVID-19 originated in Wuhan lab. April 22,
2020. Retrieved from (August 13, 2020)
https://www.neweurope.eu/article/nobel-winning-
scientist-says-covid-19-originated-in-wuhan-lab/
ResearchGate has not been able to resolve any citations for this publication.
Article
Full-text available
Gain-of-function (GOF) research involves experimentation that aims or is expected to (and/or, perhaps, actually does) increase the transmissibility and/or virulence of pathogens. Such research, when conducted by responsible scientists, usually aims to improve understanding of disease causing agents, their interaction with human hosts, and/or their potential to cause pandemics. The ultimate objective of such research is to better inform public health and preparedness efforts and/or development of medical countermeasures. Despite these important potential benefits, GOF research (GOFR) can pose risks regarding biosecurity and biosafety. In 2014 the administration of US President Barack Obama called for a “pause” on funding (and relevant research with existing US Government funding) of GOF experiments involving influenza, SARS, and MERS viruses in particular. With announcement of this pause, the US Government launched a “deliberative process” regarding risks and benefits of GOFR to inform future funding decisions—and the US National Science Advisory Board for Biosecurity (NSABB) was tasked with making recommendations to the US Government on this matter. As part of this deliberative process the National Institutes of Health commissioned this Ethical Analysis White Paper, requesting that it provide (1) review and summary of ethical literature on GOFR, (2) identification and analysis of existing ethical and decision-making frameworks relevant to (i) the evaluation of risks and benefits of GOFR, (ii) decision-making about the conduct of GOF studies, and (iii) the development of US policy regarding GOFR (especially with respect to funding of GOFR), and (3) development of an ethical and decision-making framework that may be considered by NSABB when analyzing information provided by GOFR risk-benefit assessment, and when crafting its final recommendations (especially regarding policy decisions about funding of GOFR in particular). The ethical and decision-making framework ultimately developed is based on the idea that there are numerous ethically relevant dimensions upon which any given case of GOFR can fare better or worse (as opposed to there being necessary conditions that are either satisfied or not satisfied, where all must be satisfied in order for a given case of GOFR to be considered ethically acceptable): research imperative, proportionality, minimization of risks, manageability of risks, justice, good governance (i.e., democracy), evidence, and international outlook and engagement. Rather than drawing a sharp bright line between GOFR studies that are ethically acceptable and those that are ethically unacceptable, this framework is designed to indicate where any given study would fall on an ethical spectrum—where imaginable cases of GOFR might range from those that are most ethically acceptable (perhaps even ethically praiseworthy or ethically obligatory), at one end of the spectrum, to those that are most ethically problematic or unacceptable (and thus should not be funded, or conducted), at the other. The aim should be that any GOFR pursued (and/or funded) should be as far as possible towards the former end of the spectrum.
Article
The main result of this updated release is the formal proof that 2019-nCoV coronavirus is partially a SYNTHETIC genome. We proof the CONCENTRATION in a small région of wuhan New genome (300bp) of 3 different régions from HIV1 ENVELOPPE gene and 3 others from HIV2 and SIV (ENV and POL RT). All this is remarkable and bears the mark of a desire for organization of a human nature: LOGIC, SYMETRIES. In this article, we demonstrate also that there is a kind of global human hosts adaptation strategy of SARS viruses as well as a strategy of global evolution of the genomes of the different strains of SARS which have emerged, mainly in China, between years 2003 first SARS genomes and the last 2019 COVID-19 Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome. This global strategy, this temporal link, is materialized in our demonstration by highlighting stationary numerical waves controlling the entire sequence of their genomes. Curiously, these digital waves characterizing the 9 SARS genomes studied here are characteristic whole numbers: the "Fibonacci numbers", omnipresent in the forms of Nature, and which our research for several decades has shown strong links with the proportions of nucleotides in DNA. Here we demonstrate that the complexity and fractal multiplicity of these Fibonacci numerical waves increases over the years of the emergence of new SARS strains. We suggest that this increase in the overall organization of the SARS genomes over the years reflects a better adaptation of SARS genomes to the human host. The question of a link with pathogenicity remains open. However, we believe that this overall strategy for the evolution of the SARS genomes ensures greater unity, consistency and integrity of the genome. Finally, we ask ourselves the question of a possible artificial origin of this genome, in particular because of the presence of fragments of HIV1, HIV2 and SIV retroviruses.
Have Arisen via Serial Passage through an Animal Host or Cell Culture?
Have Arisen via Serial Passage through an Animal Host or Cell Culture? BioEssays. 2020. DOI: 10.1002/bies-202000091
Nobel winning scientist says COVID-19 originated in Wuhan lab
  • E Pavlovska
Pavlovska E. Nobel winning scientist says COVID-19 originated in Wuhan lab. April 22, 2020. Retrieved from (August 13, 2020)