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The infection fatality rate of COVID-19 inferred from seroprevalence data

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Objective To estimate the infection fatality rate of coronavirus disease 2019 (COVID-19) from data of seroprevalence studies. Methods Population studies with sample size of at least 500 and published as peer-reviewed papers or preprints as of May 12, 2020 were retrieved from PubMed, preprint servers, and communications with experts. Studies on blood donors were included, but studies on healthcare workers were excluded. The studies were assessed for design features and seroprevalence estimates. Infection fatality rate was estimated from each study dividing the number of COVID-19 deaths at a relevant time point by the number of estimated people infected in each relevant region. Correction was also attempted accounting for the types of antibodies assessed. Results Twelve studies were identified with usable data to enter into calculations. Seroprevalence estimates ranged from 0.113% to 25.9% and adjusted seroprevalence estimates ranged from 0.309% to 33%. Infection fatality rates ranged from 0.03% to 0.50% and corrected values ranged from 0.02% to 0.40%. Conclusions The infection fatality rate of COVID-19 can vary substantially across different locations and this may reflect differences in population age structure and case-mix of infected and deceased patients as well as multiple other factors. Estimates of infection fatality rates inferred from seroprevalence studies tend to be much lower than original speculations made in the early days of the pandemic.
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The infection fatality rate of COVID-19 inferred from seroprevalence data
John P.A. Ioannidis
Departments of Medicine, of Epidemiology and Population Health, of Biomedical Data Science,
and of Statistics and Meta-Research Innovation Center at Stanford (METRICS), Stanford
University, Stanford, CA, USA
E-mail: jioannid@stanford.edu
Funding: METRICS has been supported by a grant from the Laura and John Arnold Foundation
Conflicts of interest: None
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ABSTRACT
Objective To estimate the infection fatality rate of coronavirus disease 2019 (COVID-19) from
data of seroprevalence studies.
Methods Population studies with sample size of at least 500 and published as peer-reviewed
papers or preprints as of May 12, 2020 were retrieved from PubMed, preprint servers, and
communications with experts. Studies on blood donors were included, but studies on healthcare
workers were excluded. The studies were assessed for design features and seroprevalence
estimates. Infection fatality rate was estimated from each study dividing the number of COVID-19
deaths at a relevant time point by the number of estimated people infected in each relevant region.
Correction was also attempted accounting for the types of antibodies assessed.
Results Twelve studies were identified with usable data to enter into calculations. Seroprevalence
estimates ranged from 0.113% to 25.9% and adjusted seroprevalence estimates ranged from
0.309% to 33%. Infection fatality rates ranged from 0.03% to 0.50% and corrected values ranged
from 0.02% to 0.40%.
Conclusions The infection fatality rate of COVID-19 can vary substantially across different
locations and this may reflect differences in population age structure and case-mix of infected and
deceased patients as well as multiple other factors. Estimates of infection fatality rates inferred
from seroprevalence studies tend to be much lower than original speculations made in the early
days of the pandemic.
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The infection fatality rate (IFR), the probability of dying for a person who is infected, is
one of the most critical and most contested features of the coronavirus disease 2019 (COVID-19)
pandemic. The expected total mortality burden of COVID-19 is directly related to the IFR.
Moreover, justification for various non-pharmacological public health interventions depends
crucially on the IFR. Some aggressive interventions that potentially induce also more pronounced
collateral harms1 may be considered appropriate, if IFR is high. Conversely, the same measures
may fall short of acceptable risk-benefit thresholds, if the IFR is low.
Early data from China, adopted also by the World Health Organization (WHO),2 focused
on a crude case fatality rate (CFR) of 3.4%; CFR is the ratio of COVID-19 deaths divided by the
number of documented cases, i.e. patients with symptoms who were tested and found to be PCR-
positive for the virus. The WHO envoy who visited China also conveyed the message that there
are hardly any asymptomatic infections.3 With a dearth of asymptomatic infections, the CFR
approximates the IFR. Other mathematical models suggested that 40-70%,4 or even5 81% of the
global population would be infected. Influential mathematical models5,6 eventually dialed back to
an IFR of 1.0% or 0.9%, and these numbers continue to be widely cited and used in both public
and scientific circles as of this writing (May 12, 2020). The most influential of these models,
constructed by Imperial College estimated 2.2 million deaths in the USA and over half a million
deaths in the UK in the absence of lockdown measures.5 Such grave predictions justifiably led to
lockdown measures adopted in many countries. With 0.9% assumed infection fatality rate and
81% assumed proportion of people infected, the prediction would correspond to a global number
of deaths comparable with the 1918 influenza, in the range of 50 million fatalities.
Since late March 2020, many studies have tried to estimate the extend of spread of the
virus in various locations by evaluating the seroprevalence, i.e. how many people in population
samples have developed antibodies for the virus. These studies can be useful because they may
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inform about the extend of under-ascertainment of documenting the infection based on PCR
testing. Moreover, they can help obtain estimates about the IFR, since one can divide the number
of observed deaths by the estimated number of people who are inferred to have been infected.
At the same time, seroprevalence studies may have several caveats in their design,
conduct, and analysis that may affect their results and their interpretation. Here, data from the first
presented full papers (either peer-reviewed or preprint) as of May 12, 2020 were collected,
scrutinized, and used to infer estimates of IFR in different locations where these studies have been
conducted.
METHODS
Seroprevalence studies
The input data for the calculations of IFR presented here are studies of seroprevalence of
COVID-19 that have been done in the general population, or in samples that might approximate
the general population (e.g. with proper reweighting) and that have been published in peer-
reviewed journals or have been submitted as preprints as of May 12, 2020. Only studies with at
least 500 assessed samples were considered, since smaller datasets would entail extremely large
uncertainty for any calculations to be based on them. Studies where results were only released
through press releases were not considered here, since it is very difficult to tell much about their
design and analysis, and this is fundamental in making any inferences based on their results. Some
key ones that have attracted large attention (e.g. New York seroprevalence) are nevertheless
considered in the Discussion. Preprints should also be seen with caution since they have not been
yet fully peer-reviewed (although some of them have already been revised based on very extensive
comments from the scientific community). However, in contrast to press releases, preprints
typically offer at least a fairly complete paper with information about design and analysis. Studies
done of blood donors were eligible. Studies done on health care workers were not, since they deal
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with a group at potentially high exposure risk. Searches were made in PubMed, LitCOVID,
medRxiv, bioRxiv, and Research Square using the terms “seroprevalence” and “antibodies” as of
May 12, 2020. Communication with colleagues who are field experts sought to ascertain if any
major studies might have been missed.
Information was extracted from each study on location, recruitment and sampling strategy,
dates of sample collection, sample size, types of antibody used (IgG, IgM, IgA), estimated crude
seroprevalence (positive samples divided by all samples test), and adjusted seroprevalence and
features that were considered in the adjustment (sampling process, test performance, presence of
symptoms, other).
Calculation of inferred IFR
Information on the population of the relevant location was collected from the papers.
Whenever it was missing, it was derived based on recent census data. For two studies on blood
donors where the authors stated that they would not extrapolate on people outside the recruited age
group of 17-70 and on people >70 years old, respectively, all calculations were made on the 17-70
and =<70 years old groups, respectively.
The number of infected people was calculated multiplying the relevant population with the
adjusted estimate of seroprevalence. Whenever an adjusted seroprevalence estimate had not been
obtained, the unadjusted seroprevalence was used instead. When seroprevalence estimates with
different adjustments were available, the analysis with maximal adjustment was selected. When
seroprevalence studies had used sequential waves of testing over time, data from the most recent
wave was used, since it would give the most updated picture of the epidemic wave.
For the number of COVID-19 deaths, the number of deaths recorded at the time chosen by
the authors of each study was selected, whenever the authors used such a death count to estimate
seroprevalence themselves. If this had not been done by the authors, the number of deaths within 1
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week of the mid-point of the study period was chosen. This accounts for the differential delay in
developing antibodies versus dying from the infection.
The inferred IFR was obtained by dividing the number of deaths by the number of infected
people. A corrected IFR is also presented, trying to account for the fact that only one or two types
of antibodies (among IgG, IgM, IgA) might have been used. Correcting seroprevalence upwards
(and inferred IFR downwards) by 1.1-fold for not performing IgM measurements and similarly for
not performing IgA measurements may be reasonable, based on some early evidence,7 although
there is uncertainty about the exact correction factor.
RESULTS
Seroprevalence studies
Twelve studies with a sample size of at least 500 have been published either in the peer-
reviewed literature or as preprints as of May 12, 2020.8-19 Dates and processes of sampling and
recruitment are summarized in Table 1, sample sizes, antibody types assessed and regional
population appear in Table 2, and estimated prevalence, number of people infected in the study
region, and inferred IFR are summarized in Table 3. Two studies (Geneva10 and Rio Grande do
Sul17) performed repeated seroprevalence surveys at different time points, and only the most
recent one is shown in these tables.
As shown in Table 1, these studies varied substantially in sampling and recruitment
designs. The main issue is whether they can offer a representative picture of the population in the
region where they are performed. A generic problem is that vulnerable people who are at high risk
of infection and/or death may be more difficult to recruit in survey-type studies. COVID-19
infection seems to be particularly widespread and/or lethal in nursing homes, among homeless
people, in prisons, and in disadvantaged minorities. Most of these populations are very difficult, or
even impossible to reach and sample from and they are probably under-represented to various
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degrees (or even entirely missed) in surveys. This would result in an underestimation of
seroprevalence and thus overestimation of IFR. Four studies (Iran,8 Geneva,10 Gangelt,16 and Ro
Grande do Sul17) explicitly aimed for random sampling from the general population. In principle,
this is a stronger design. However, even with such designs, people who cannot be reached (e.g. by
e-mail or phone or even visiting them at a house location) will not be recruited, and these
vulnerable populations are likely to be missed.
Three of the twelve studies assessed blood donors in Denmark,12 Netherlands,15 and
Scotland.18 By definition these studies include people in good health and without symptoms, at
least recently, and therefore may markedly underestimate COVID-19 seroprevalence in the
general population. A small set of 200 blood donors in Oise, France13 showed 3% seroprevalence,
while pupils, siblings, parents, teachings and staff at high school in the same area had 25.9%
seroprevalence.
For the other studies, healthy volunteer bias may lead to underestimating seroprevalence
and this is likely to have been the case in at least one case (the Santa Clara study)19 where wealthy
healthy people were rapidly interested to be recruited when the recruiting Facebook ad was
released. The design of the study anticipated correction with adjustment of the sampling weights
by zip code, gender, and ethnicity, but it is likely that healthy volunteer bias may still have led to
some underestimation of seroprevalence. Conversely, attracting individuals who might have been
concerned of having been infected (e.g. because they had symptoms) may lead to overestimation
of seroprevalence in surveys.
As shown in Table 2, all studies have tested for IgG antibodies, but only 5 have also
assessed IgM and 2 have assessed IgA. Only one study assessed all three types of antibodies. The
ratio of people sampled versus the total population of the region was better than 1:1000 in only
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three studies (Idaho,9 Denmark blood donors,12 Santa Clara19), which means that the estimates can
have substantial uncertainty.
Seroprevalence estimates
As shown in Table 3, crude prevalence ranged from as little as 0.133% to as high as
25.7%. Studies varied a lot on whether they tried or not to adjust their estimates for test
performance, sampling (striving to get closer to a more representative sample), and clustering
effects (e.g. when including same household members). The adjusted seroprevalence occasionally
differed substantially from the crude, unadjusted value. In principle adjusted values are likely to
be closer to the true estimate, but the exercise shows that each study alone may have some
unavoidable uncertainty and fluctuation, depending on the analytical choices preferred.
Inferred IFR
Interestingly, despite their differences in design, execution, and analysis, most studies
provide IFR point estimates that are within a relatively narrow range. Seven of the 12 inferred
IFRs are in the range 0.07 to 0.20 (corrected IFR of 0.06 to 0.16) which are similar to IFR values
of seasonal influenza. Three values are modestly higher (corrected IFR of 0.25-0.40 in Gangelt,
Geneva, and Wuhan) and two are modestly lower than this range (corrected IFR of 0.02-0.03 in
Kobe and Oise).
DISCUSSION
Inferred IFR values based on emerging seroprevalence studies show a much lower fatality
than initially speculated in the earlier days of the pandemic. Many IFR estimates are in the range
of seasonal influenza IFR, but some are higher, and some others are lower than this range. It
should be appreciated that IFR is not a fixed physical constant and it can vary substantially across
locations, depending on the population structure, the case-mix of infected and deceased
individuals and other, local factors.
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The three higher values (corrected IFR of 0.25-0.40) are in Gangelt, Geneva, and Wuhan.
Gangelt16 represents a situation with a superspreader event (in a local carnival) and 7 deaths were
recorded in the city, all of them in very elderly individuals (average age 81, sd 3.5). COVID-19 is
known to have a very steep age gradient of death risk.20 It is expected therefore that in locations
where the infection finds its way into killing predominantly elderly citizens, the overall, age-
unadjusted IFR would be higher. However, IFR would still be very low in people less than 70 in
these locations, e.g. in Gangelt IFR is 0.000 in non-elderly people. Similarly, in Switzerland, 69%
of the deaths have occurred in people >80 years old20 and this explains the higher age-unadjusted
IFR in Geneva, which was considered a paradise for spending one’s last years until the COVID-19
struck. Similar to Germany, very few deaths in Switzerland have been recorded in non-elderly
people, e.g. only 2.5% have occurred in people <60 years old and the IFR in that age-group would
be in the range of 0.01%. The majority of deaths in most of the hard hit European countries have
happened in nursing homes21 and a large proportion of deaths also in the US22 also seem to follow
this pattern. Moreover, a very large number of these nursing home deaths have no laboratory
confirmation and thus they need to be seen with extra caution in terms of the causal impact of
SARS-CoV-2.
Locations with high burdens of nursing home deaths may have high IFR estimates, but the
IFR would still be very low among non-elderly, non-debilitated people. The average length of stay
in a nursing home is slightly more than 2 years and people who die in nursing homes die in an
median of 5 months23 so it is likely that COVID-19 nursing home deaths may have happened in
people with life expectancy of only a few months. This needs to be verified in careful assessments
of COVID-19 outbreaks in nursing homes with detailed risk profiling of the fatalities. If this
pattern is prominent, it may even create a dent of less than expected mortality in the very elderly
age stratum (e.g. >85 years) in the next 3-6 months following the passage of the coronavirus
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excess mortality wave. Perusal of Euromonitor data24 and similar national mortality death curves
would be interesting to undertake in this regard.
Finally, the estimated IFR of 0.31 in Wuhan may reflect the wide spread of the infection to
hospital personnel and the substantial contribution of nosocomial infections to a higher death
toll.25 It may also reflect unfamiliarity with how to deal with the infection in the first location
where COVID-19 arose.
Massive deaths of elderly individuals in nursing homes, nosocomial infections, and
overwhelmed hospitals may also explain the very high fatality seen in specific locations in
Northern Italy26 and in New York and New Jersey. A very unfortunate decision of the governors
in New York and New Jersey was to have COVID-19 patients sent to nursing homes. Moreover,
some hospitals in New York City hotspots reached maximum capacity and perhaps could not offer
optimal care. With large proportions of medical and paramedical personnel infected, it is possible
that nosocomial infections increased the death toll. Use of unnecessarily aggressive management
(e.g. mechanical ventilation) may also have contributed to worse outcomes. Furthermore, New
York City has an extremely busy, congested public transport system that may have exposed large
segments of the population to high infectious load in close contact transmission and, thus, perhaps
more severe disease. A more aggressive viral clade has also been speculated, but this needs further
verification.27 These factors may explain why preliminary press-released information28 on a
seroprevalence survey in New York State suggests a much higher IFR. With 20% estimated crude
seroprevalence in New York City, including a range between 17.3% in Manhattan to 27.6% in
Bronx28 (adjusted seroprevalence figures have not been released), IFR would be as high as 0.8%
in Bronx and 1% in Queens, and even higher if probable COVID-19 deaths are included in the
calculations. It may not be surprising that IFR may reach very high levels among disadvantaged
populations and settings that have the worst combination of factors predisposing to higher
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fatalities. One may predict also very high IFRs in other select locations with atypically high death
toll, e.g. Bergamo or Brescia in Italy.26 However, these locations are very uncommon exceptions
in the global landscape. Moreover, even in these locations, the IFR for non-elderly individuals
without predisposing conditions may remain very low. E.g. in New York City only 0.6% of all
deaths happened in people <65 years without major underlying conditions.29 Thus the IFR even in
New York City would probably be lower than 0.01% in these people.
The two studies with extremely low inferred IFR, Kobe and Oise, are also worthwhile
discussing. For Kobe, the authors of the study11 raise the question whether COVID-19 deaths have
been undercounted in Japan. Both undercounting and overcounting of COVID-19 deaths is likely
to be a caveat in different locations and this is difficult to settle in the absence of very careful
scrutiny of medical records and autopsies. For the Oise sample,13 it is possible that it may not be
representative of the general population. As discussed above, there is a large difference in the
estimated seroprevalence between the high school-based sampling and a small dataset of blood
donors from the same area, and the true seroprevalence value may be somewhere between these
two extremes that may be biased in opposite directions.
A few seroprevalence studies have also been designed to assess seroprevalence repeatedly
spacing out measurements in the same population over time. Preliminary data from Southern
Brazil17 are still early to judge for meaningful increases, but the data from Geneva suggest that
seroprevalence increased more than 3-fold over a period of three weeks.10 This is interesting,
because the increase corresponds to continued infections during a period where strict social
distancing and other lockdown measures were implemented. Data from Finland30, with repeated
measurements over several weeks (available at the Finnish Institute website, but not submitted as
full paper yet) conversely show fairly steady seroprevalence in a country that maintained a much
lower overall death burden. More repeated measures results may give some stronger evidence on
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whether different measures were associated with curbed transmission or not, and how these might
translate to different IFR values. Any causal inferences need to be extremely cautious. However, it
is expected that measures that manage to avoid transmission of the virus to vulnerable high-risk
populations may lead to lower values of IFR. Measure packages that do not protect these high-risk
populations may lead to higher values of IFR.
The only data from a less developed country among the 12 studies examined here come
from Iran8 and the IFR estimate appears to be the same or lower than the IFR of seasonal
influenza. Iran has a young population with only slightly over 1% of the age pyramid at age >80.
The same applies to almost every less developed country around the world. Given the very sharp
age gradient and the sparing of children and young adults from death by COVID-19, one may
expect COVID-19 IFR to be fairly low in the less developed countries. However, it remains to be
seen whether comorbidities, poverty and frailty (e.g. malnutrition) may have adverse impact on
risk and thus increase IFR also in these countries.
One should caution that the extent of validation of the antibody assays against positive and
negative controls differs across studies. Specificity has typically exceeded 99.0%, which is
reassuring. However, for very low prevalence rates, even 99% specificity may be problematic. The
study with the lowest estimated prevalence (Brazil)17 has nevertheless evaluated also family
members of the people who tested positive and found several family members were also infected,
thus suggesting that most of the positive readings are true rather than false positives. Sensitivity
also varies from 60-100% in different validation exercises and for different tests, but typically it is
closer to the upper than the lower bound. One caveat about sensitivity is that typically the positive
controls are patients who had symptoms and thus were tested and found to be PCR-positive.
However, it is possible that symptomatic patients may be more likely to develop antibodies than
patients who are asymptomatic or have minimal symptoms and thus had not sought PCR
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testing.31,32 Since the seroprevalence studies specifically try to unearth these asymptomatic/mildly
symptomatic missed infections, a lower sensitivity for these mild infections could translate to
substantial underestimates of the number of infected people and substantial overestimate of the
inferred IFR.
The corrected IFR estimates are trying to account for undercounting of infected people
when not all 3 antibodies (IgG, IgM, and IgA) are assessed.7 However, the magnitude of the
correction is uncertain and may also vary in different circumstances. Moreover, it is possible that
an unknown proportion of people may have handled the virus using immune mechanisms
(mucosal, innate, cellular) that did not generate any serum antibodies.33,34 This would lead to an
unknown magnitude of underestimation of the frequency of the infection and a respective
overestimation of the IFR.
An interesting observation is that even under congested circumstances, like cruise ships,
aircraft carriers or homeless shelter, the proportion of people infected does not get to exceed 20-
45%.35,36 Similarly, at a wider population level, values ~33% are the maximum values
documented to-date. It has been suggested37,38 that differences in host susceptibility and behavior
can result in herd immunity at much lower prevalence of infection in the population than
originally expected. COVID-19 spreads by infecting certain groups more than others because
some people have much higher likelihood of exposure. People most likely to be exposed also tend
to be those most likely to spread for the same reasons that put them at high exposure risk. In the
absence of random mixing of people, the epidemic wave may be extinguished even with relatively
low proportions of people becoming infected. Seasonality may also play a role in the dissipation
of the epidemic wave.
A major limitation of the current analysis is that the calculations presented in this paper
depend largely on preprints that have not yet been fully peer-reviewed. Moreover, there is a
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substantially larger number of studies that have made press releases about their results and
probably several more will become available in the near future. Those that include or allow
calculation of IFR estimates in their press releases seem to have values that are similar to those of
the 12 studies analyzed here, and most estimates are in the range of seasonal influenza (e.g. 0.20 in
Los Angeles county, 0.16 in Slovenia, 0.18 in Stockholm, 0.00 in San Miguel county in
Colorado), but obviously these results require extreme caution. The plan is to try to update this
analysis with new emerging data. More clean, vetted data may make the overall picture more crisp
and allow having more granularity on the determinants that lead to higher or lower IFR in
different locations.
A comparison of COVID-19 to influenza is often attempted, but this may be an uneven
comparison. At a very broad, bird’s eye view level, worldwide the IFR of COVID-19 this season
may be in the same ballpark as the IFR of influenza (0.1%, 0.2% in a bad year). According to this
scenario, which needs further verification, COVID-19 may have infected as of May 12
approximately 200 million people (or more), far more than the ~4.2 PCR-documented cases.
However, influenza devastates developing countries, but is more tolerant of wealthy nations,
probably because of the availability and wider use of vaccination in these countries.39 Conversely,
in the absence of vaccine and with a clear preference for elderly debilitated individuals, COVID-
19 may have an inverse death toll profile, with more deaths in wealthy nations than in the
developing world. However, even in the wealthy nations, COVID-19 seems to affect
predominantly the frail, the disadvantaged, and the marginalized – as shown by high rates of
infectious burden in nursing homes, homeless shelters, prisons, meat processing plants, and the
strong racial/ethnic inequalities against minorities in terms of the cumulative death risk.40,41
While COVID-19 is a formidable threat, the fact that its IFR is much lower than originally
feared, is a welcome piece of evidence. The fact that its IFR can vary substantially also based on
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case-mix and settings involved also creates additional ground for evidence-based, more precise
management strategies. Decision-makers can use measures that will try to avert having the virus
infect people and settings who are at high risk of severe outcomes. These measures may be
possible to be far more precise and tailored to specific high-risk individuals and settings than blind
lockdown of the entire society. Of course, uncertainty remains about the future evolution of the
pandemic, e.g. the presence and height of a second wave.42 However, it is helpful to know that
SARS-CoV-2 has relatively low IFR overall and that possibly its IFR can be made even lower
with appropriate, precise non-pharmacological choices.
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Table 1. Seroprevalence studies on COVID-19 published or depositing preprints as of May
12, 2020: dates, sampling and recruitment process
Location Dates Sampling and recruitment
Iran (Guilan)
8
April Population-based cluster random sampling design
through phone call invitation, household-based.
Idaho (Boise)
9
Late April People from the Boise, Idaho metropolitan area,
part of the Crush the Curve initiative.
Switzerland (Geneva)
10
April 20-27 Randomly selected previous participants of the
Bus Santé study with an email (or phone contact,
if e-mail unavailable); participants were invited to
bring all members of their household, aged 5
years and older.
Japan (Kobe)
11
March 31-April 7 Randomly selected patients who visited outpatient
clinics and received blood testing for any reason.
Patients who visited the emergency department or
the designated fever consultation service were
excluded.
Denmark blood donors
12
April 6-17 All Danish blood donors aged 17-69 years giving
blood. Blood donors are healthy and must comply
with strict eligibility criteria; they must self-defer
for two weeks if they develop fever with upper
respiratory symptoms.
France (Oise)
13
March 30-April 4 Pupils, their parents and siblings, as well as
teachers and non-teaching staff of a high-school.
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China (Wuhan)
14
April 3-15 People applying for a permission of resume
(n=1,021) and hospitalized patients during April 3
to 15 (n=381).
Netherlands blood
donors15
April 1-15 Blood donors. Donors must be completely
healthy, but they may have been ill in the past,
provided that they recovered at least two weeks
before.
Germany (Gangelt)
16
March 30-April 6 600 adult persons with different surnames in
Gangelt were randomly selected, and
all household members were asked to participate
in the study.
Brazil (Rio Grande do
Sul)17
April 25-27 Multi-stage probability sampling was used in each
of 9 cities to select 500 households, within which
one resident was randomly chosen for testing.
Scotland blood donors
18
March 21-23 Blood donors. Donors should not have felt unwell
in the last 14 days, also some other deferrals
applied regarding travel and COVID-19
symptoms.
California (Santa Clara)
19
April 2-3 Facebook ad with additional targeting by zip
code.
*population <70 years old, considered relevant.
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Table 2. Sample size, types of antibodies, and population in relevant region
Location Sample size Antibody Population in region
Iran (Guilan) 551 IgG/IgM 2354848
Idaho (Boise) 4856 IgG 392365 (Ada county)
Switzerland (Geneva) 576 IgG 5000000
Japan (Kobe) 1000 IgG 1518870
Denmark blood donors 9496 IgG/IgM 3800000*
France (Oise) 661 IgG 5978000
China (Wuhan) 1401 IgG/IgM 11080000
Netherlands blood donors 7361 IgG/IgM/IgA
13745768**
Germany (Gangelt) 919 IgG/IgA 12597
Brazil (Rio Grande do Sul) 4500 IgG 11377239
Scotland blood donors 500 IgG 5400000
California (Santa Clara) 3300 IgG/IgM 1928000
*population 17-70 years old **population <70 years
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Table 3. Prevalence and inferred infection fatality rates
Location Prev
Adjusted prev
(adjustments)
Estimated
infected Deaths (date)
Inferred IFR
(corrected
)
Iran (Guilan) 22.0 33.0 (test, samp) 770000 617 (4/23) 0.08 (0.07)
Idaho (Boise) 1.79 ND 7023 14 (4/24) 0.20 (0.16)
Switzerland (Geneva) 8.7 9.7 (test, age, sex) 48500 243 (4/30) 0.50 (0.40)
Japan (Kobe) 3.3 2.7 (age, sex) 40999 10 (mid-April) 0.02 (0.02)
Denmark blood donors 1.8 1.7 (test) 64600* 53 (4/21)* 0.08 (0.07
)*
France (Oise) 25.9 ND 1548000 635 (4/7) 0.04 (0.03)
China (Wuhan) 10.0 ND 1108000 3869 (5/2) 0.35 (0.31)
Netherlands blood donors 2.7 ND 371119** 344 (4/15)** 0.09 (0.09)*
*
Germany (Gangelt) 15.0 20.0 (test, cluster, sym)
2519 7 (4/15) 0.28 (0.25)
Brazil (Rio Grande do Sul) 0.133 0.309 (samp, city size) 35153 50 (4/30) 0.14 (0.11)
Scotland blood donors 1.2 ND 64800 47 (4/1) 0.07 (0.06)
California (Santa Clara) 1.5 2.6 (test, samp, cluster)
51000 94 (4/22) 0.18 (0.17)
*population 17-70 years; **population <70 years; Prev: prevalence; samp: sampling; sym:
symptoms; test: test performance; ND: no data available; IFR: infection fatality rate. The inferred
IFR is derived by dividing the number of deaths (at the time chosen by the authors of each study,
or within 1 week of the mid-point of the study dates, whenever the authors had not arbitrated on
death count) by the estimated number of infected people. The corrected IFR is obtained from the
inferred IFR assuming that, as compared with assessing IgG, IgM, and IgA, 20% of the infections
are missed when only IgG is assessed, and 10% of the infections are missed when two of the three
antibodies are assessed.
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... 30 Another study based on the seroprevalence data from 51 locations indicated substantial variation in infection-fatality ratios, ranging from 0·00% to 1·54%, with a median of 0·23%. 31 The lower infection-fatality ratio in our study could be accounted for by several factors, including the completeness of death reporting, variation in the prevalence of comorbidities, and the age structure of the population. 32,33 Due to the absence of age-stratified death data from these 70 districts, and as the study was not powered for age-stratified seroprevalence, we could not calculate age-stratified infection-fatality ratios. ...
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Summary Background The first national severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) serosurvey in India, done in May–June, 2020, among adults aged 18 years or older from 21 states, found a SARS-CoV-2 IgG antibody seroprevalence of 0·73% (95% CI 0·34–1·13). We aimed to assess the more recent nationwide seroprevalence in the general population in India. Methods We did a second household serosurvey among individuals aged 10 years or older in the same 700 villages or wards within 70 districts in India that were included in the first serosurvey. Individuals aged younger than 10 years and households that did not respond at the time of survey were excluded. Participants were interviewed to collect information on sociodemographics, symptoms suggestive of COVID-19, exposure history to laboratory- confirmed COVID-19 cases, and history of COVID-19 illness. 3–5 mL of venous blood was collected from each participant and blood samples were tested using the Abbott SARS-CoV-2 IgG assay. Seroprevalence was estimated after applying the sampling weights and adjusting for clustering and assay characteristics. We randomly selected one adult serum sample from each household to compare the seroprevalence among adults between the two serosurveys. Findings Between Aug 18 and Sept 20, 2020, we enrolled and collected serum samples from 29082 individuals from 15 613 households. The weighted and adjusted seroprevalence of SARS-CoV-2 IgG antibodies in individuals aged 10 years or older was 6·6% (95% CI 5·8–7·4). Among 15084 randomly selected adults (one per household), the weighted and adjusted seroprevalence was 7·1% (6·2–8·2). Seroprevalence was similar across age groups, sexes, and occupations. Seroprevalence was highest in urban slum areas followed by urban non-slum and rural areas. We estimated a cumulative 74·3 million infections in the country by Aug 18, 2020, with 26–32 infections for every reported COVID-19 case. Interpretation Approximately one in 15 individuals aged 10 years or older in India had SARS-CoV-2 infection by Aug 18, 2020. The adult seroprevalence increased approximately tenfold between May and August, 2020. Lower infection-to-case ratio in August than in May reflects a substantial increase in testing across the country. Funding Indian Council of Medical Research.
... The CFR was used prior to the realization that a significant proportion of SARS-CoV-2 "infections" remain asymptomatic and therefore undetected, resulting in an IFR that is much lower than the CFR. A working paper by Oke and Heneghan (2020) estimates the IFR in the range of 0.1% to 0.35%, while a meta-analysis of 36 sero-prevalence studies by Ioannidis (2020b) infers an IFR of 0.27%. Ioannidis was heavily criticized for his early, optimistic estimates, but he was recently vindicated when his updated analysis based on 61 studies confirmed a median IFR of 0.27% and was published in the WHO Bulletin (Ioannidis 2020c). ...
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An indirect in-house immunofluorescent assay was developed in order to assess the serological status of COVID-19 patients in Marseille, France. Performance of IFA was compared to a commercial ELISA IgG kit. We tested 888 RT-qPCR-confirmed COVID-19 patients (1302 serum samples) and 350 controls including 200 sera collected before the pandemic, 64 sera known to be associated with nonspecific serological interference, 36 sera from non-coronavirus pneumonia and 50 sera from patient with other common coronavirus to elicit false-positive serology. Incorporating an inactivated clinical SARS-CoV-2 isolate as the antigen, the specificity of the assay was measured as 100% for IgA titre ≥ 1:200, 98.6% for IgM titre ≥ 1:200 and 96.3% for IgG titre ≥ 1:100 after testing a series of negative controls. IFA presented substantial agreement (86%) with ELISA EUROIMMUN SARS-CoV-2 IgG kit (Cohen’s Kappa = 0.61). The presence of antibodies was then measured at 3% before a 5-day evolution up to 47% after more than 15 days of evolution. We observed that the rates of seropositivity as well as the titre of specific antibodies were both significantly higher in patients with a poor clinical outcome than in patients with a favourable evolution. These data, which have to be integrated into the ongoing understanding of the immunological phase of the infection, suggest that detection anti-SARS-CoV-2 antibodies is useful as a marker associated with COVID-19 severity. The IFA assay reported here is useful for monitoring SARS-CoV-2 exposure at the individual and population levels.
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Background: The pandemic due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has tremendous consequences for our societies. Knowledge of the seroprevalence of SARS-CoV-2 is needed to accurately monitor the spread of the epidemic and to calculate the infection fatality rate (IFR). These measures may help the authorities to make informed decisions and adjust the current societal interventions. The objective was to perform nationwide real-time seroprevalence surveying among blood donors as a tool to estimate previous SARS-CoV-2 infections and the population based IFR. Methods: Danish blood donors aged 17-69 years giving blood April 6 to May 3 were tested for SARS-CoV-2 immunoglobulin M and G antibodies using a commercial lateral flow test. Antibody status was compared between geographical areas and an estimate of the IFR was calculated. The seroprevalence was adjusted for assay sensitivity and specificity taking the uncertainties of the test validation into account when reporting the 95% confidence intervals (CI). Results: The first 20,640 blood donors were tested and a combined adjusted seroprevalence of 1.9% (CI: 0.8-2.3) was calculated. The seroprevalence differed across areas. Using available data on fatalities and population numbers a combined IFR in patients younger than 70 is estimated at 89 per 100,000 (CI: 72-211) infections. Conclusions: The IFR was estimated to be slightly lower than previously reported from other countries not using seroprevalence data. The IFR is likely several fold lower than the current estimate. We have initiated real-time nationwide anti-SARS-CoV-2 seroprevalence surveying of blood donations as a tool in monitoring the epidemic.
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The world faces an unprecedented SARS-CoV2 pandemic where many critical factors still remain unknown. The case fatality rates (CFR) reported in the context of the SARS-CoV-2 pandemic substantially differ between countries. For SARS-CoV-2 infection with its broad clinical spectrum from asymptomatic to severe disease courses, the infection fatality rate (IFR) is the more reliable parameter to predict the consequences of the pandemic. Here we combined virus RT-PCR testing and assessment for SARS-CoV2 antibodies to determine the total number of individuals with SARS-CoV-2 infections in a given population. Methods: A sero-epidemiological GCP- and GEP-compliant study was performed in a small German town which was exposed to a super-spreading event (carnival festivities) followed by strict social distancing measures causing a transient wave of infections. Questionnaire-based information and biomaterials were collected from a random, household-based study population within a seven-day period, six weeks after the outbreak. The number of present and past infections was determined by integrating results from anti-SARS-CoV-2 IgG analyses in blood, PCR testing for viral RNA in pharyngeal swabs and reported previous positive PCR tests. Results: Of the 919 individuals with evaluable infection status (out of 1,007; 405 households) 15.5% (95% CI: [12.3%; 19.0%]) were infected. This is 5-fold higher than the number of officially reported cases for this community (3.1%). Infection was associated with characteristic symptoms such as loss of smell and taste. 22.2% of all infected individuals were asymptomatic. With the seven SARS-CoV-2-associated reported deaths the estimated IFR was 0.36% [0.29%; 0.45%]. Age and sex were not found to be associated with the infection rate. Participation in carnival festivities increased both the infection rate (21.3% vs. 9.5%, p<0.001) and the number of symptoms in the infected (estimated relative mean increase 1.6, p=0.007). The risk of a person being infected was not found to be associated with the number of study participants in the household this person lived in. The secondary infection risk for study participants living in the same household increased from 15.5% to 43.6%, to 35.5% and to 18.3% for households with two, three or four people respectively (p<0.001). Conclusions: While the number of infections in this high prevalence community is not representative for other parts of the world, the IFR calculated on the basis of the infection rate in this community can be utilized to estimate the percentage of infected based on the number of reported fatalities in other places with similar population characteristics. Whether the specific circumstances of a super-spreading event not only have an impact on the infection rate and number of symptoms but also on the IFR requires further investigation. The unexpectedly low secondary infection risk among persons living in the same household has important implications for measures installed to contain the SARS-CoV-2 virus pandemic.
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Most countries are suffering severely from the ongoing covid-19 pandemic despite various levels of preventive measures. A common question is if and when a country or region will reach herd immunity h. The classical herd immunity level hCh_C is defined as hC=11/R0h_C=1-1/R_0, where R0R_0 is the basic reproduction number, for covid-19 estimated to lie somewhere in the range 2.2-3.5 depending on country and region. It is shown here that the disease-induced herd immunity level hDh_D, after an outbreak has taken place in a country/region with a set of preventive measures put in place, is actually substantially smaller than hCh_C. As an illustration we show that if R0=2.5R_0=2.5 in an age-structured community with mixing rates fitted to social activity studies, and also categorizing individuals into three categories: low active, average active and high active, and where preventive measures affect all mixing rates proportionally, then the disease-induced herd immunity level is hD=43%h_D=43\% rather than hC=11/2.5=60%h_C=1-1/2.5=60\%. Consequently, a lower fraction infected is required for herd immunity to appear. The underlying reason is that when immunity is induced by disease spreading, the proportion infected in groups with high contact rates is greater than that in groups with low contact rates. Consequently, disease-induced immunity is stronger than when immunity is uniformly distributed in the community as in the classical herd immunity level.
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Background: Assessing the burden of COVID-19 based on medically-attended case counts is suboptimal given its reliance on testing strategy, changing case definitions and the wide spectrum of disease presentation. Population-based serosurveys provide one avenue for estimating infection rates and monitoring the progression of the epidemic, overcoming many of these limitations. Methods: Taking advantage of a pool of adult participants from population-representative surveys conducted in Geneva, Switzerland, we implemented a study consisting of 8 weekly serosurveys among these participants and their household members older than 5 years. We tested each participant for anti-SARS-CoV-2-IgG antibodies using a commercially available enzyme-linked immunosorbent assay (Euroimmun AG, Lubeck, Germany). We estimated seroprevalence using a Bayesian regression model taking into account test performance and adjusting for the age and sex of Geneva's population. Results: In the first three weeks, we enrolled 1335 participants coming from 633 households, with 16% <20 years of age and 53.6% female, a distribution similar to that of Geneva. In the first week, we estimated a seroprevalence of 3.1% (95% CI 0.2-5.99, n=343). This increased to 6.1% (95% CI 2.6-9.33, n=416) in the second, and to 9.7% (95% CI 6.1-13.11, n=576) in the third week. We found that 5-19 year-olds (6.0%, 95% CI 2.3-10.2%) had similar seroprevalence to 20-49 year olds (8.5%, 95%CI 4.99-11.7), while significantly lower seroprevalence was observed among those 50 and older (3.7%, 95% CI 0.99-6.0, p=0.0008). Interpretation: Assuming that the presence of IgG antibodies is at least in the short-term associated with immunity, these results highlight that the epidemic is far from burning out simply due to herd immunity. Further, no differences in seroprevalence between children and middle age adults are observed. These results must be considered as Switzerland and the world look towards easing restrictions aimed at curbing transmission.
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Introduction: An important unknown during the COVID-19 pandemic has been the infection-fatality rate (IFR). This differs from the case-fatality rate (CFR) as an estimate of the number of deaths as a proportion of the total number of cases, including those who are mild and asymptomatic. While the CFR is extremely valuable for experts, IFR is increasingly being called for by policy-makers and the lay public as an estimate of the overall mortality from COVID-19. Methods: Pubmed and Medrxiv were searched using a set of terms and Boolean operators on 25/04/2020. Articles were screened for inclusion by both authors. Meta-analysis was performed in Stata 15.1 using the metan command, based on IFR and confidence intervals extracted from each study. Google/Google Scholar was used to assess the grey literature relating to government reports. Results: After exclusions, there were 13 estimates of IFR included in the final meta-analysis, from a wide range of countries, published between February and April 2020. The meta-analysis demonstrated a point-estimate of IFR of 0.75% (0.49-1.01%) with significant heterogeneity (p<0.001). Conclusion: Based on a systematic review and meta-analysis of published evidence on COVID-19 until the end of April, 2020, the IFR of the disease across populations is 0.75% (0.49-1.01%). However, due to very high heterogeneity in the meta-analysis, it is difficult to know if this represents the "true" point estimate. It is likely that different places will experience different IFRs. More research looking at age-stratified IFR is urgently needed to inform policy-making on this front.
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Population based data on COVID-19 are urgently needed for informing policy decisions, yet few such studies are available anywhere, as most surveys rely on self-selected volunteers. In the Brazilian State of Rio Grande do Sul (population 11.3 million), we are carrying out fortnightly household surveys in nine of the largest cities. Multi-stage probability sampling was used in each city to select 500 households, within which one resident was randomly chosen for testing. The Wondfo lateral flow rapid test for detecting antibodies against SARS-CoV-2 has been validated in four different settings, including our own, with pooled estimates of sensitivity (84.8%, 95% CI 81.4%;87.8%) and specificity (99.0%, 95% CI 97.8%;99.7%), which are within the acceptable range for epidemiological studies. In the first wave of the study (April 11-13), 4,188 subjects were tested, of whom two were positive (0.0477%; 95% confidence interval (CI) 0.0058%;0.1724%). In the second round (Apr 25-27) there were six positive subjects (0.1333%; 95% CI 0.0489%;0.2900%). We also tested family members of positive index cases, and nine out of 19 had positive results. Testing of reported COVID-19 cases according to RT-PCR confirmed that the test was highly sensitive under field conditions. The epidemic is at an early stage in the State, as the first case was reported on Feb 28, and by Apr 30, 50 deaths were registered. Strict lockdown measures were implemented in mid-March, and our results suggest that compliance was high, with full or near full compliance rates of 79.4% in the first and 71.7% in the second round. As far as we know, this is the only large population anywhere undergoing regular household serological surveys for COVID-19. The results show that the epidemic is at an early phase, and findings from the next rounds will allow us to document time trends and propose Public Health measures.