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Estado de conservación de la Flora de la Región Mediterránea: realidad y retos de futuro
Abstract
La cuenca del Mediterráneo alberga una de las floras más ricas y diversas del mundo, formada por unas 25.000 especies (Greuter, 1991 y 1994; Médail & Quézel, 1997), gran parte de la cual, más del 50 % según algunas estimaciones, es endémica de este territorio o de alguno de los que los países ribereños. Sin embargo, su estudio y conocimiento está aún lejos de ser completo. Simplemente el inventario, la relación de especies que viven en este territorio, no ha podido completarse pese a los esfuerzos realizados en las últimas décadas del siglo XX y las primeras del XXI (Greuter et al., 1984-2008). Sirvan como ejemplo las aún inacabadas floras de Grecia (Strid & Tan, 1997-2002) o la Península Ibérica (Castroviejo, 1986-2019), los dos extremos del Mediterráneo, donde se concentra la mayor diversidad de especies (Heywood, 2002; Aedo et al., 2013).
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Founder analysis is a method for analysis of nonrecombining DNA sequence data, with the aim of identification and dating of migrations into new territory. The method picks out founder sequence types in potential source populations and dates lineage clusters deriving from them in the settlement zone of interest. Here, using mtDNA, we apply the approach to the colonization of Europe, to estimate the proportion of modern lineages whose ancestors arrived during each major phase of settlement. To estimate the Palaeolithic and Neolithic contributions to European mtDNA diversity more accurately than was previously achievable, we have now extended the Near Eastern, European, and northern-Caucasus databases to 1,234, 2, 804, and 208 samples, respectively. Both back-migration into the source population and recurrent mutation in the source and derived populations represent major obstacles to this approach. We have developed phylogenetic criteria to take account of both these factors, and we suggest a way to account for multiple dispersals of common sequence types. We conclude that (i) there has been substantial back-migration into the Near East, (ii) the majority of extant mtDNA lineages entered Europe in several waves during the Upper Palaeolithic, (iii) there was a founder effect or bottleneck associated with the Last Glacial Maximum, 20,000 years ago, from which derives the largest fraction of surviving lineages, and (iv) the immigrant Neolithic component is likely to comprise less than one-quarter of the mtDNA pool of modern Europeans.
Significance
Since the discovery that all non-Africans inherit 2% of their genomes from Neandertal ancestors, there has been a great interest in understanding the fate and effects of introgressed Neandertal DNA in modern humans. A number of recent studies have claimed that there has been continuous selection against introgressed Neandertal DNA over the last 55,000 years. Here, we show that there has been no long-term genome-wide removal of Neandertal DNA, and that the previous result was due to incorrect assumptions about gene flow between African and non-African populations. Nevertheless, selection did occur following introgression, and its effect was strongest in regulatory regions, suggesting that Neandertals may have differed from humans more in their regulatory than in their protein-coding sequences.
Dengue virus (DENV) has re‐emerged in Europe driven by the geographic expansion of the mosquito species Aedes albopictus and Aedes aegypti (Diptera: Culicidae) and the introduction of the virus by viraemic travellers. In the present study, the vector competence (VC) of Ae. albopictus collected in Catalonia (northeast Spain) was evaluated for two different DENV strains, DENV‐1 and DENV‐2, the serotypes responsible for all outbreaks of dengue that have occurred in Europe. Mosquitoes were reared under environmental conditions mimicking the mean temperature and humidity recorded in July on the Mediterranean coast of Catalonia. Mosquitoes were fed on an artificial infectious bloodmeal and, at 14 days post‐exposure, infection, disseminated infection and transmission rates (IR, DIR, TR) and transmission efficiency (TE) were determined by testing the virus in the body, legs and saliva. The tested Ae. albopictus strain was found to be susceptible to both DENV‐1 and DENV‐2 and to be able to transmit DENV‐1. This is the first time that the VC of Ae. albopictus for DENV has been tested in Europe in this specific context (i.e. mimicking the Mediterranean temperature and humidity recorded in Catalonia in July). This study confirms the potential of Ae. albopictus to start autochthonous DENV transmission cycles in the Mediterranean basin.
After many recent findings regarding geographical distribution and nomenclatural changes, an updated and revised checklist
of the Egyptian endemic flora was needed. This study provides an up to date checklist of vascular taxa exclusive to Egypt and
their distribution within the administrative provinces. Egypt hosts 48 endemic taxa (including 35 species, seven subspecies
and six varieties) belonging to 42 genera, 18 families and representing 2.3% of the total flora. The most represented families
are Asteraceae, Lamiaceae, Caryophyllaceae, Fabaceae, Asparagaceae and Brassicaceae, while the most represented genus is
Silene (three endemic taxa). Therophytes and chamaephytes are the most represented life-forms among Egyptian endemics.
The richest regions in Egyptian endemic taxa are Southern Sinai (14 taxa), Northern Sinai and Matrouh (12 taxa each).
Agglomerative hierarchical clustering (AHC) enabled the division of Egypt into three main regions based on the occurrence
of endemic taxa: Eastern Egypt (31 taxa, 25 exclusive and six shared taxa), Western Egypt (14 taxa, seven exclusive and
seven shared taxa) and Middle Egypt (12 taxa, eight exclusive and four shared taxa). This checklist will help to focus
conservation efforts and provide a framework for research, protection and policy implementations for these endemic taxa.
The Phoenicians emerged in the Northern Levant around 1800 BCE and by the 9th century BCE had spread their culture across the Mediterranean Basin, establishing trading posts, and settlements in various European Mediterranean and North African locations. Despite their widespread influence, what is known of the Phoenicians comes from what was written about them by the Greeks and Egyptians. In this study, we investigate the extent of Phoenician integration with the Sardinian communities they settled. We present 14 new ancient mitogenome sequences from pre-Phoenician (~1800 BCE) and Phoenician (~700–400 BCE) samples from Lebanon (n = 4) and Sardinia (n = 10) and compare these with 87 new complete mitogenomes from modern Lebanese and 21 recently published pre-Phoenician ancient mitogenomes from Sardinia to investigate the population dynamics of the Phoenician (Punic) site of Monte Sirai, in southern Sardinia. Our results indicate evidence of continuity of some lineages from pre-Phoenician populations suggesting integration of indigenous Sardinians in the Monte Sirai Phoenician community. We also find evidence of the arrival of new, unique mitochondrial lineages, indicating the movement of women from sites in the Near East or North Africa to Sardinia, but also possibly from non-Mediterranean populations and the likely movement of women from Europe to Phoenician sites in Lebanon. Combined, this evidence suggests female mobility and genetic diversity in Phoenician communities, reflecting the inclusive and multicultural nature of Phoenician society.
The Valencian Community (eastern Spain) was the pioneer territory establishing plant micro-reserves (PMRs). Its model to protect small sites for endemic and endangered plants has been exported to several countries around the globe. This paper highlights 1) the role of PMRs to complement the protection provided by large protected areas, 2) how the establishment of PMRs fosters the increase of floristic knowledge, and 3) the fact that continuous monitoring of PMRs also yields new records of endangered species found within the same PMRs. The flexibility of the PMR approach -it can be adapted to other national and regional legislations-allows its transfer to other rich-biodiversity regions and countries such as China.
Fossil evidence points to an African origin of Homo sapiens from a group called either H. heidelbergensis or H. rhodesiensis. However, the exact place and time of emergence of H. sapiens remain obscure because the fossil record is scarce and the chronological age of many key specimens remains uncertain. In particular, it is unclear whether the present day 'modern' morphology rapidly emerged approximately 200 thousand years ago (ka) among earlier representatives of H. sapiens1 or evolved gradually over the last 400 thousand years2. Here we report newly discovered human fossils from Jebel Irhoud, Morocco, and interpret the affinities of the hominins from this site with other archaic and recent human groups. We identified a mosaic of features including facial, mandibular and dental morphology that aligns the Jebel Irhoud material with early or recent anatomically modern humans and more primitive neurocranial and endocranial morphology. In combination with an age of 315 ± 34 thousand years (as determined by thermoluminescence dating)3, this evidence makes Jebel Irhoud the oldest and richest African Middle Stone Age hominin site that documents early stages of the H. sapiens clade in which key features of modern morphology were established. Furthermore, it shows that the evolutionary processes behind the emergence of H. sapiens involved the whole African continent.
Important gaps remain in our understanding of the spread of farming into Europe, due partly to apparent contradictions between studies of contemporary genetic variation and ancient DNA. It seems clear that farming was introduced into central, northern, and eastern Europe from the south by pioneer colonization. It is often argued that these dispersals originated in the Near East, where the potential source genetic pool resembles that of the early European farmers, but clear ancient DNA evidence from Mediterranean Europe is lacking, and there are suggestions that Mediterranean Europe may have resembled the Near East more than the rest of Europe in the Mesolithic. Here, we test this proposal by dating mitogenome founder lineages from the Near East in different regions of Europe. We find that whereas the lineages date mainly to the Neolithic in central Europe and Iberia, they largely date to the Late Glacial period in central/eastern Mediterranean Europe. This supports a scenario in which the genetic pool of Mediterranean Europe was partly a result of Late Glacial expansions from a Near Eastern refuge, and that this formed an important source pool for subsequent Neolithic expansions into the rest of Europe. ©2017 The Author(s) Published by the Royal Society. All rights reserved.
Ethnic groups can display differential genetic susceptibility to infectious diseases. The arthropod-born viral dengue disease is one such disease, with empirical and limited genetic evidence showing that African ancestry may be protective against the haemorrhagic phenotype. Global ancestry analysis based on high-throughput genotyping in admixed populations can be used to test this hypothesis, while admixture mapping can map candidate protective genes. A Cuban dengue fever cohort was genotyped using a 2.5 million SNP chip. Global ancestry was ascertained through ADMIXTURE and used in a fine-matched corrected association study, while local ancestry was inferred by the RFMix algorithm. The expression of candidate genes was evaluated by RT-PCR in a Cuban dengue patient cohort and gene set enrichment analysis was performed in a Thai dengue transcriptome. OSBPL10 and RXRA candidate genes were identified, with most significant SNPs placed in inferred weak enhancers, promoters and lncRNAs. OSBPL10 had significantly lower expression in Africans than Europeans, while for RXRA several SNPs may differentially regulate its transcription between Africans and Europeans. Their expression was confirmed to change through dengue disease progression in Cuban patients and to vary with disease severity in a Thai transcriptome dataset. These genes interact in the LXR/RXR activation pathway that integrates lipid metabolism and immune functions, being a key player in dengue virus entrance into cells, its replication therein and in cytokine production. Knockdown of OSBPL10 expression in THP-1 cells by two shRNAs followed by DENV2 infection tests led to a significant reduction in DENV replication, being a direct functional proof that the lower OSBPL10 expression profile in Africans protects this ancestry against dengue disease.
Significance
The Neolithic expansion in Europe took place at an average rate of 1 km⋅y ⁻¹ . In the West Mediterranean, the archaeological record yields a much faster rate of spread, one that cannot be explained by classical overland models. Voyaging has been put forward as an alternative line of explanation. Here, we develop a computational model to identify the key elements and mechanisms and to estimate the values that yield outcomes that fit the observations. The results show that voyaging is indeed required to explain the pattern. We have also found that interactions with local hunter-gatherers played a lesser part in the fast rate of spread.
Since 1998 the Valencian Community (Spain) has pioneered the establishment of plant micro-reserves (PMR), which has resulted in a network currently comprising 299 sites. The PMR are compatible with large protected areas including natural parks (NP, 22 areas). In fact, 73 PMR are included within the NP network (internal subnet of PMR) and 226 PMR are outside NP (external subnet). Here we analyze how the PMR network complements that of NP in capturing rare (RS, twp categories), endemic (ES, three categories) and endangered (TS, four categories) plants. The external subnet increases the number of plant species with territorial protection by 10.8% in RS, 15.8% in ES and 21.0% in TS categories. Additionally, when comparing number of species in the external and internal PMR subnets not shared with the alternative subnet type, the former has higher absolute and relative values for the nine categories analyzed. We propose that the internal network should be increased only to capture populations of the species that are not included in the external subnet.
Supplementary information on taxonomy, nomenclature, distribution within Greece, total range, life form and ecological traits of vascular plants known to occur in Greece is presented and the revised data are quantitatively analysed. Floristic discrepancies between Vascular plants of Greece: An annotated checklist (Dimopoulos & al. 2013) and relevant influential datasets (Flora europaea, Med-Checklist, Euro+Med PlantBase, etc.) are explained and clarified. An additional quantity of synonyms and misapplied names used in previous Greek floristic literature is presented. Taxonomic and floristic novelties published after 31 October 2013 are not considered.
Jellyfish are important predators of fish eggs and larvae and predation is believed to be the main factor determining fish recruitment. The diet of different life stages of Pelagia noctiluca and their potential predation impact on ichthyoplankton were investigated in the NW Mediterranean Sea. In June, the spatial distribution of jellyfish and fish larvae, particularly those of anchovy, overlapped in the study area. Gut content analyses showed relatively high abundance of ichthyoplankton in large medusae, while siphonophores were the most numerous prey of ephyrae. Gut contents, digestion times (DT), and prey and predator abundances were used to estimate predation effects (% of standing stock consumed time⁻¹) of P. noctiluca. Medusae consumed 0.1–0.9% h⁻¹ of the anchovy larvae, while ephyrae consumed 1.5–2.7% h⁻¹ of all fish larvae and 1.5–10.4% h⁻¹ of anchovy larvae. We estimate that medusae and ephyrae consumed 0.02–3.2% h⁻¹ and 0.4–7.1% h⁻¹ of fish eggs, respectively. P. noctiluca can reach extremely high numbers and in a bloom situation it can be an important predator of fish larvae, in particular anchovy. Hence it may play an important role in the planktonic food web with a possible impact on anchovy populations.
In being at the base of the marine food web, phytoplankton is particularly important for marine ecosystem functioning (e.g., biodiversity). Strong anthropization, over-exploitation of natural resources, and climate change affect the natural amount of phytoplankton and, therefore, represent a continuous threat to the biodiversity in marine waters. In particular, a concerning risks for coastal waters is the increase in nutrient inputs of terrestrial/anthropogenic origin that can lead to undesirable modifications of phytoplankton concentration (i.e., eutrophication). Monitoring chlorophyll (Chl) concentration, which is a proxy of phytoplankton biomass, is an efficient tool for recording and understanding the response of the marine ecosystem to human pressures and thus for detecting eutrophication. Here, we compute Chl trends over the Mediterranean Sea by using satellite data, also highlighting the fact that remote sensing may represent an efficient and reliable solution to synoptically control the “good environmental status” (i.e., the Marine Directive to achieve Good Environmental Status of EU marine waters by 2020) and to assess the application of international regulations and environmental directives. Our methodology includes the use of an ad hoc regional (i.e., Mediterranean) algorithm for Chl concentration retrieval, also accounting for the difference between offshore (i.e., Case I) and coastal (i.e., Case II) waters. We apply the Mann-Kendall test and the Sens’s method for trend estimation to the Chl concentration de-seasonalized monthly time series, as obtained from the X-11 technique. We also provide a preliminary analysis of some particular trends by evaluating their associated inter-annual variability. The high spatial resolution of our approach allows a clear identification of intense trends in those coastal waters that are affected by river outflows. We do not attempt to attribute the observed trends to specific anthropogenic events. However, the trends that we document are consistent with the findings of several previous studies.
While Phoenician culture and trade networks had a significant impact on Western civilizations, we know little about the Phoenicians themselves. In 1994, a Punic burial crypt was discovered on Byrsa Hill, near the entry to the National Museum of Carthage in Tunisia. Inside this crypt were the remains of a young man along with a range of burial goods, all dating to the late 6th century BCE. Here we describe the complete mitochondrial genome recovered from the Young Man of Byrsa and identify that he carried a rare European haplogroup, likely linking his maternal ancestry to Phoenician influenced locations somewhere on the North Mediterranean coast, the islands of the Mediterranean or the Iberian Peninsula. This result not only provides the first direct ancient DNA evidence of a Phoenician individual but the earliest evidence of a European mitochondrial haplogroup, U5b2c1, in North Africa.
This first issue of The State of Mediterranean and Black Sea Fisheries is a comprehensive review of the status and trends of fisheries in the Mediterranean and Black Sea. It includes eight chapters, separated in two parts: a first part on the status and trends of Mediterranean and Black Sea fisheries under different aspects such as fleet, catches, socio-economic variables, bycatch, small-scale fisheries and stock status, and a second part describing management measures adopted by the GFCM towar ds the sustainability of fisheries in its area of application. The report is based to a large extent on the most up-to-date data available submitted by GFCM contracting and cooperating non-contracting parties, including information on stock status, national catches, fleet and socio-economic information up to 2014. It is also complemented with information from other sources, including literature review and, for small-scale fisheries, the outcomes of the First Regional Symposium on Sustainable Small-Scale Fisheries in the Mediterranean and Black Sea, organized in 2013 in Malta.
Cities with a Mediterranean-type climate (Med-cities) are particularly susceptible to health risks from climate change since they are located in biogeographical hot-spots that experience some of the strongest effects of the changing climate. The study aims to highlight health impacts of climate change in Med-cities, analyze local climate adaptation plans and make adaptation policy recommendations for the Med-city level. We identified five Med-cities with a climate change adaptation plan: Adelaide, Barcelona, Cape Town, Los Angeles and Santiago. Beyond their similar Med-climate features (although Santiago's are slightly different), the cities have different socio-economic characteristics in various aspects. We analyzed each plan according to how it addresses climate change-related drivers of health impacts among city dwellers. For each driver, we identified the types of policy adaptation tools that address it in the urban climate adaptation plans. The surveyed cities address most of the fundamental climate change-related drivers of risks to human health, including rising temperatures, flooding and drought, but the policy measures to reduce negative impacts vary across cities. We suggest recommendations for Med-cities in various aspects, depending on their local needs and vulnerability challenges: assessment of health risks, extreme events management and long-term adaptation, among others.
Determining the timing, identity and direction of migrations in the Mediterranean Basin, the role of "migratory routes" in and among regions of Africa, Europe and Asia, and the effects of sex-specific behaviors of population movements have important implications for our understanding of the present human genetic diversity. A crucial component of the Mediterranean world is its westernmost region. Clear features of transcontinental ancient contacts between North African and Iberian populations surrounding the maritime region of Gibraltar Strait have been identified from archeological data. The attempt to discern origin and dates of migration between close geographically related regions has been a challenge in the field of uniparental-based population genetics. Mitochondrial DNA (mtDNA) studies have been focused on surveying the H1, H3 and V lineages when trying to ascertain north-south migrations, and U6 and L in the opposite direction, assuming that those lineages are good proxies for the ancestry of each side of the Mediterranean. To this end, in the present work we have screened entire mtDNA sequences belonging to U6, M1 and L haplogroups in Andalusians-from Huelva and Granada provinces-and Moroccan Berbers. We present here pioneer data and interpretations on the role of NW Africa and the Iberian Peninsula regarding the time of origin, number of founders and expansion directions of these specific markers. The estimated entrance of the North African U6 lineages into Iberia at 10 ky correlates well with other L African clades, indicating that U6 and some L lineages moved together from Africa to Iberia in the Early Holocene. Still, founder analysis highlights that the high sharing of lineages between North Africa and Iberia results from a complex process continued through time, impairing simplistic interpretations. In particular, our work supports the existence of an ancient, frequently denied, bridge connecting the Maghreb and Andalusia.
The Mediterranean Sea ranks among the ocean regions warming fastest. There is evidence for impacts of climate change on marine Mediterranean organisms but a quantitative assessment is lacking. We compiled the impacts of warming reported in the literature to provide a quantitative assessment for the Mediterranean Sea. During the last three decades the summer surface temperature has increased 1.15°C. Strong heat wave events have occurred in years 1994, 2003, and 2009. Impacts of warming are evident on growth, survival, fertility, migration and phenology of pelagic and benthic organisms, from phytoplankton to marine vegetation, invertebrates and vertebrates. Overall, 50% of biological impacts in the Mediterranean Sea occur at summer surface temperature anomaly ≤ 4.5°C and at summer surface temperature of 27.5°C. The activation energy (geometric mean 1.58 ± 0.48 eV), the slope of the Arrhenius equation describing the temperature-dependence of biological processes, for the response of Mediterranean marine biota to warming reveals that these responses in the Mediterranean are far steepest than possibly explained by the direct effect of warming alone. The observations are biased toward the northern and western sectors of the basin, likely underestimating the impacts of warming in areas where warming is particularly intense.
Posidonia oceanica meadows are declining at alarming rates due to climate change and human activities. Although P. oceanica is considered the most important and well-studied seagrass species of the Mediterranean Sea, to date there has been a limited effort to combine all the spatial information available and provide a complete distribution of meadows across the basin. The aim of this work is to provide a fine-scale assessment of (i) the current and historical known distribution of P. oceanica, (ii) the total area of meadows and (iii) the magnitude of regressive phenomena in the last decades. The outcomes showed the current spatial distribution of P. oceanica, covering a known area of 1,224,707 ha, and highlighted the lack of relevant data in part of the basin (21,471 linear km of coastline). The estimated regression of meadows amounted to 34% in the last 50 years, showing that this generalised phenomenon had to be mainly ascribed to cumulative effects of multiple local stressors. Our results highlighted the importance of enforcing surveys to assess the status and prioritize areas where cost-effective schemes for threats reduction, capable of reversing present patterns of change and ensuring P. oceanica persistence at Mediterranean scale, could be implemented.
Stachys virgata, a rare Greek member of S. subsect. Rectae, was hitherto known from historical collections made in the north-eastern and southern parts of Peloponnisos, the last one dated in 1844. Its only recent record, on Poros Island in 1940, is not supported by a herbarium specimen. The species was rediscovered in 2005, 161 years after its last collection, and subsequently documented in 18 populations (1 of them now extinct) distributed along the eastern slopes of Mt. Parnonas and Mt. Madara in east Peloponnisos. We review the species’ description and distribution based on both historical records and recent collections, select a specimen deposited in the Natural History Museum, Paris (P) as a lectotype, and count its
chromosome number, 2n = 34, for the first time. We evaluate the species’ taxonomic relationships and consider its threats and conservation status based on our own field work and several years of monitoring. S. virgata totals 355 mature plants and 12 out of its 18 populations comprise 20 plants or fewer. Based on the IUCN criteria, S. virgata falls under the Endangered (EN) category and specific conservation measures are proposed. Finally, we provide a key distinguishing S. virgata from the other Greek members of S. subsect. Rectae.
The Mediterranean region is vulnerable to climatic changes. A warming trend exists in the basin with changes in rainfall patterns. It is expected that vector-borne diseases (VBD) in the region will be influenced by climate change since weather conditions influence their emergence. For some diseases (i.e., West Nile virus) the linkage between emergence andclimate change was recently proved; for others (such as dengue) the risk for local transmission is real. Consequently, adaptation and preparation for changing patterns of VBD distribution is crucial in the Mediterranean basin. We analyzed six representative Mediterranean countries and found that they have started to prepare for this threat, but the preparation levels among them differ, and policy mechanisms are limited and basic. Furthermore, cross-border cooperation is not stable and depends on international frameworks. The Mediterranean countries should improve their adaptation plans, and develop more cross-sectoral, multidisciplinary and participatory approaches. In addition, based on experience from existing local networks in advancing national legislation and trans-border cooperation, we outline recommendations for a regional cooperation framework. We suggest that a stable and neutral framework is required, and that it should address the characteristics and needs of African, Asian and European countries around the Mediterranean in order to ensure participation. Such a regional framework is essential to reduce the risk of VBD transmission, since the vectors of infectious diseases know no political borders.
The proportion of Europeans descending from Neolithic farmers ∼10 thousand years ago (KYA) or Palaeolithic hunter-gatherers has been much debated. The male-specific region of the Y chromosome (MSY) has been widely applied to this question, but unbiased estimates of diversity and time depth have been lacking. Here we show that European patrilineages underwent a recent continent-wide expansion. Resequencing of 3.7 Mb of MSY DNA in 334 males, comprising 17 European and Middle Eastern populations, defines a phylogeny containing 5,996 single-nucleotide polymorphisms. Dating indicates that three major lineages (I1, R1a and R1b), accounting for 64% of our sample, have very recent coalescent times, ranging between 3.5 and 7.3 KYA. A continuous swathe of 13/17 populations share similar histories featuring a demographic expansion starting ∼2.1-4.2 KYA. Our results are compatible with ancient MSY DNA data, and contrast with data on mitochondrial DNA, indicating a widespread male-specific phenomenon that focuses interest on the social structure of Bronze Age Europe.
This publication has been prepared by IUCN (International Union for Conservation of Nature).
The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of the European Commission or IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of the European Commission or IUCN
At the crossroads between Africa and Eurasia, Arabia is necessarily a melting pot, its peoples enriched by successive gene flow over the generations. Estimating the timing and impact of these multiple migrations are important steps in reconstructing the key demographic events in the human history. However, current methods based on genome-wide information identify admixture events inefficiently, tending to estimate only the more recent ages, as here in the case of admixture events across the Red Sea (∼8-37 generations for African input into Arabia, and 30-90 generations for "back-to-Africa" migrations). An mtDNA-based founder analysis, corroborated by detailed analysis of the whole-mtDNA genome, affords an alternative means by which to identify, date and quantify multiple migration events at greater time depths, across the full range of modern human history, albeit for the maternal line of descent only. In Arabia, this approach enables us to infer several major pulses of dispersal between the Near East and Arabia, most likely via the Gulf corridor. Although some relict lineages survive in Arabia from the time of the out-of-Africa dispersal, 60 ka, the major episodes in the peopling of the Peninsula took place from north to south in the Late Glacial and, to a lesser extent, the immediate post-glacial/Neolithic. Exchanges across the Red Sea were mainly due to the Arab slave trade and maritime dominance (from ∼2.5 ka to very recent times), but had already begun by the early Holocene, fuelled by the establishment of maritime networks since ∼8 ka. The main "back-to-Africa" migrations, again undetected by genome-wide dating analyses, occurred in the Late Glacial period for introductions into eastern Africa, whilst the Neolithic was more significant for migrations towards North Africa.
Early Neolithic sea voyaging and organized colonization of large islands involving crossings in the range of 100 km are well documented in the Eastern and Central Mediterranean. In the west, the distribution of obsidian from Tyrrhenian sources and the lack of human settlement in the Balearic archipelago until later prehistoric times suggest a pattern of contact, exchange and dispersal where navigation would have been restricted to small-scale, insight of land crossings and cabotage journeys. For the spread of farming into Iberia to have followed a North African route, the path of entry must therefore have been the Straits of Gibraltar, which presupposes an earlier emergence of the Neolithic in the Maghreb, where the associated impressed ware material culture in turn implies an ultimate origin in southern Italy and, therefore, the crossing of the Siculo-Tunisian Strait. In North Africa, however, the earliest directly dated domesticates postdate by several centuries similar evidence from Valencia, Andalucía and Portugal, while the presence of Pantelleria obsidian in the nearest mainlands substantiates prehistoric navigation between Europe and Africa in the central Mediterranean after ~7000 cal BP, only at a time when farming economies were already several centuries old in Iberia. The material culture similarities perceived in the Early Neolithic of southern Iberia and the Maghreb may indicate a North-to-South diffusion of farming across the Straits of Gibraltar but not the reverse.
Nearly two decades since the first retrieval of Neanderthal DNA, recent advances in next-generation sequencing technologies have allowed the gen-eration of high-coverage genomes from two archaic hominins, a Neanderthal and a Denisovan, as well as a complete mitochondrial genome from remains which probably represent early members of the Neanderthal lineage. This genomic information, coupled with diversity exome data from several Neanderthal specimens is shedding new light on evolutionary processes such as the genetic basis of Neanderthal and modern human-specific adaptations—including morphological and behavioural traits—as well as the extent and nature of the admixture events between them. An emerging picture is that Neanderthals had a long-term small population size, lived in small and isolated groups and probably practised inbreeding at times. Dele-terious genetic effects associated with these demographic factors could have played a role in their extinction. The analysis of DNA from further remains making use of new large-scale hybridization-capture-based methods as well as of new approaches to discriminate contaminant DNA sequences will pro-vide genetic information in spatial and temporal scales that could help clarify the Neanderthal's—and our very own—evolutionary history.
Protection and management of closely related endangered species and subspecies at a very narrow regional scale is the origin of multiple dysfunctional conservation decisions. These include artificially increased IUCN risk assessment categories and derived consequences: poor effectiveness in allocating public and private funds or repeat of unnecessary actions/facilities. Data provided by the revisited study of a group of W Mediterranean larkspurs (Delphinium ser. Fissa), including new data on demography, niche modeling, genetic diversity and phylogeography, contributed to a new and wider analysis of causes of threat. Although current IUCN Red List regulations did not allow for assessments at levels higher than a specific rank, scientific information suggests that in some cases this could be a better approach for sound scientifically-based biodiversity conservation planning and action.
Prevalence of many complex diseases, including dengue disease, is not even across the world. Dengue is endemic in several overpopulated urban centers in poor Asian and American countries, representing a risk to two-thirds of the human population. High-throughput genomic screenings and new algorithms of admixture mapping are allowing confirming that ancestry plays a major role in dengue disease. Allele and haplotype candidate frequencies display high heterogeneity between population groups, especially in comparison with Africans. Genetic risk evaluation testifies African ancestry protection against the more severe forms of the disease, most probably due to natural selection of protective variants. European genetic predisposition is identical to the Asian for severer forms, but lower for mild dengue fever.
A detailed study of 15 sediment cores from Blanes Canyon and its immediate surroundings (NW Mediterranean Sea) was conducted to compare historic sedimentation rates and evaluate the possible impact of bottom-trawling intensification on the sedimentary regimes over the past 50 years. The canyon axis and flanks, as well as the adjacent open slope, were sampled at water depths ranging from 300 m to 2200 m. Grain size, dry bulk density, and ²¹⁰Pb concentration profiles were measured to assess possible changes in sedimentation rates over the last century and their temporal and spatial relationship to bottom trawling effort. Sedimentation rates in the upper canyon axis (900–1200 m) had the highest rates of 0.9–2.1 cm·yr⁻¹, quantified since the 1970s. Farther downcanyon, sedimentation rates increased two to five times after the 1970s, from 0.1–0.2 cm·yr⁻¹ to 0.2–0.8 cm·yr⁻¹, which coincides with a rapid growth of the total engine power of the fishing fleet operating in the study area. The enhanced sedimentation rates occur downslope of the main fishing grounds and decrease downcanyon as the distance from trawling grounds increases. These results highlight the ability of bottom trawling to resuspend bottom sediments, leading to net erosion of the canyon rims and flanks. In turn, large volumes of sediment are advected towards the canyon's interior, ultimately increasing sediment deposition along the canyon axis. Natural sedimentation rates at similar along-canyon distance from shore in the untrawled continental slope (900–1500 m) and in the lower canyon axis (1500–2200 m) are comparable (0.08–0.20 cm·yr⁻¹), suggesting distance from coastal sediment sources as the main control on regional sedimentation in deeper parts of the margin. While submarine canyons have been regarded as preferential cross-margin conduits for sediment dispersal, they can also potentially function as modern depocenters for trawling-induced sedimentation.
The Global Strategy for Plant Conservation (GSPC) seeks to assess the conservation status of the world vascular plants by 2020, and to guarantee that at least 75% threatened taxa are conserved in situ. A comprehensive evaluation of IUCN categories for 7269 Spanish vascular plants (GSPC Target 2), using distribution data and environmental niche models, is presented. A gap analysis to assess the percentage of threatened plants effectively conserved in situ (considering national parks, plant micro-reserves and recovery or conservation plans) was also conducted (Target 7). The result is that only 44.4% threatened species are subject to an adequate in situ protection. An appropriate management of additional natural protected areas towards the conservation of threatened plants would make Spain meet this threshold, but severe deficiencies should be corrected. The methodology presented here is proposed as a tool to assess the degree of achievement of GSPC targets. This procedure can be quickly implemented and allows an easy evaluation of the progress, as well as the pending tasks in a given period of time.
In the Mediterranean, blue whiting, Micromesistius poutassou, constitutes a traditional fisheries resource. Over several decades, blue whiting landings in the Catalan coast (northwestern Mediterranean) have displayed cyclical variations, of c. 6 yrs, slightly decreased to five in the last two decades, as shown through wavelet analysis. These fluctuations have persisted under very different levels of fishing effort. This study evaluates the hypothesis that deep-water formation in the adjacent Gulf of Lions, and the enhanced primary productivity related to it, determines recruitment strength in blue whiting that results ultimately in the observed periodicity of the blue whiting landings. The link between landings and environmental drivers was explored using lagged cross-correlations, with 0- and 1-yr lag. The variables considered included large-scale indices [North Atlantic Oscillation (NAO) and the Atlantic Multi-decadal Oscillation (AMO)], Mediterranean climate indices [MO and Western Mediterranean Oscillation (WeMO)], and variables defining the local environmental conditions in the northwestern Mediterranean (sea-air heat flux, winter air temperature anomaly and Rhône river runoff). Significant correlations were only found between landings (1961-2011) and sea-air heat flux, which is generally taken as an indicator of processes of deep water convection, at 0 and 1-yr lag. These results suggest that the observed fluctuations in blue whiting landings respond to oceanographic processes taking place in the Gulf of Lions.
Outlines the early evolution of the Tethys and Mediterranean seas, including comments on the evolution of the Atlantic Ocean and the relationships of the alpine belts to the genesis of the Mediterranean basin. Closer attention is paid to the evolution of the W Mediterranean Basin, examining the Balearic Basin, Alboran Sea and Tyrrhenian Sea, and noting the stratigraphic record of this region. Global events leading to the Messinian salinity crisis when, during the Late Miocene, the Mediterranean became separated from the Atlantic, and geological evidence for this crisis are reviewed, and a dynamic model of the crisis is essayed. Regional depositional patterns during the Pliocene and Quaternary are discussed, particularly in terms of likely primary factors influencing sedimentation, and an attempt is made at modelling these phenomena.-P.J.Jarvis
This paper reports the re-discovery of Barbarea auriculata Hausskn. ex Bornm. var. auriculata (Brassicaceae), Onobrychis nitida Boiss. (Fabaceae), Onosma discedens Hausskn. ex Bornm. (Boraginaceae), and Silene oligotricha Hub.-Mor. (Caryophyllaceae). All of these taxa had been listed as Extinct (EX), according to the World Conservation Union Red List Categories. This study provides the re-descriptions of these taxa, presents field observations of these taxa, and suggests new IUCN categories.
The overall counterclockwise alongslope circulation of Atlantic Water (AW) in the western basin of the Mediterranean Sea is now generally accepted. As the eastern basin displays similar general features, why is it generally assumed to function in a different way, and why is AW now said to circulate across the interior of the eastern basin? Relatively huge mesoscale anticyclonic eddies induced by the instability of the AW circulation in the south of the western basin have lifetimes up to several years. It is possible that they extend down to the sea bottom and play a major role in the distribution of all water masses. Why have apparently similar eddies generated in the eastern basin never received specific attention? Once formed, Mediterranean Waters (MWs) must spread and circulate before outflowing. Why have simple dynamical arguments for understanding the circulation of AW, such as the Coriolis effect, rarely been considered for the circulation of MWs? In this paper we address these major aspects of water circulation in the Mediterranean Sea. In order to be as objective and convincing as possible, and to write a paper that can be understood by as broad a readership as possible, we have chosen to present only raw data sets that can be easily interpreted by the reader without any help from the author. Based on the evidence provided by these data sets, we specify the current debates and list what we think are the main unanswered questions.
The Valencian region, in eastern Spain, is home to ≈3050 vascular plant species, 68 of which are listed under the critically endangered IUCN category. To afford protection to our endangered, rare and endemic flora, a network of small (2–20 ha) statutory reserves has been created by the Regional Wildlife Service. These are termed “micro-reserves” and encompass a large number of individual species and natural habitats. The objective is to monitor long term changes in the plant populations and to carry out active management of the protected plants. In the selection of plots, criteria of distinctiveness and endangerment of plants was followed. Eight years after the onset of this initiative, plant micro-reserves have become an essential tool for the effective protection of the diverse flora of this Mediterranean region.
Aim:
Predicting the impact of climate change on marine ecosystems or how fish and other species are adapting to rising sea temperatures is still subject to much uncertainty, despite considerable progress in recent years. In this study we assess whether our understanding of the impact of sea warming on marine fish can be enhanced with an interdisciplinary approach that collates data from fisheries, fishermen and scientific research. By doing this, we aim to shed light on the major changes in the abundance and diversity of warm and cold water fish in recent decades in relation to sea warming.
Location:
This study was conducted in the north-western Mediterranean, where the impacts of global warming are particularly critical because range shifts are physically constrained.
Methods:
We collected and combined statistical data from fisheries, the traditional ecological knowledge of fishermen (TEK), reproductive data (histological gonad analyses and ichthyoplankton surveys) and extensive research into the relevant literature (including systematic catalogues and museum collections and their databases).
Results:
We have found that changes in the abundance of fish have followed a particular spatio-temporal sequence, with three different phases of colonization in the case of warm-water species (occasional occurrence, common presence and establishment), and three phases of regression (abundance reduction, range contraction and disappearance from the catch) in the case of cold-water species.
Main conclusions:
Overall, the results show that this multidisciplinary approach, combining qualitative and quantitative information from different sources, provides new insight into the observed changes in fish diversity and abundance in relation to climate change.