The results of restoration of the balanced structures of the sedimentary cover for Greater Caucasus in the rank of "structural cells" are used as a source material for the analysis of geodynamic processes of formation of the entire structure using factor analysis. The data set for 78 structural cells includes 6 parameters, which have relation to the development of the Greater Caucasus: the depth of the basement top at the pre-folded stage (stage 1), at the post-folded and modern stages (stages 2 and 3), the shortening value of the structure, the amplitude of the uplift and the difference in the depths of the basement top for stages 1 and 3. Factor analysis showed that the dispersion of all signs is provided the process of "Isostasy" (weight 47%) and "Shortening" (40%). Both processes are related to the processes of changing the density of the crust and mantle rocks. The combination of factor analysis of the two major regions and due to the addition of materials on Dagestan to them revealed that a good combination of the two mechanisms exists in the form of two processes only in the main structure of the Greater Caucasus, and especially reliably – in its western part.