ArticlePDF Available

Abstract and Figures

The genus Marasmius is distributed worldwide, along with a precise identification of this fungus as a pathogen on the Imperata cylindrical plant, although its bioactive role is not well understood. The current work was designed to examine the population of Marasmius palmivorus and its antagonistic patterns. Sequencing the ITS genetic region of this fungus occurs through verifying the cladistics nature, and taxonomic validity, in addition to studying the antagonistic potential of this fungus. M. palmivorus (MG717877.1) was recorded in this plant, which represents a new finding in Iraq mycobiota. Data from the sequence alignment were used to plot a phylogenetic tree, using the Neighbor-Joining method (NJ) in molecular evolutionary genetics analysis based on Mega 7. Phylogenetic trees show a close relationship of 99% between this strain of M. palmivorus (MG717877.1) and international strains. On the other hand, the maximum antagonistic effect of M. palmivorus has been found to act against Fusarium solani and F. thapsinum, and to a lesser degree against Penicillium sp., T. harzianum, and P. cyclopium after 6 to 8 days of incubation. Results confirm the precise nomination of this taxon is M. palmivorus, which may act as a bioherbicidal and could be used as bioagent against various phytopathogenic fungi.
Content may be subject to copyright.
*Correspondence: jka.uobsci.iq@gmail.com; +964783193359
(Received: 28 June 2019; accepted: 04 September 2019)
Hassan A. Tamur, Haider Jawad Al-Janabi, Jawad K. Abood Al-Janabi, Liqaa Y. Mohsin, Zahraa A.N. Al-Yassiry,
Characterizaon and Antagonisc Acvity of New Causal Agent of Wilt Disease in Imperata cylindrica (Marasmius palmivorus),
J Pure Appl Microbiol., 2019; 13(3): 1525-1536. hps://doi.org/10.22207/JPAM.13.3.24
© The Author(s) 2019. Open Access. This arcle is distributed under the terms of the Creave Commons Aribuon 4.0 Internaonal License which
permits unrestricted use, sharing, distribuon, and reproducon in any medium, provided you give appropriate credit to the original author(s) and
the source, provide a link to the Creave Commons license, and indicate if changes were made.
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019
Arcle 5684 | hps://doi.org/10.22207/JPAM.13.3.24
Print ISSN: 0973-7510; E-ISSN: 2581-690X
RESEARCH ARTICLE OPEN ACCESS
www.microbiologyjournal.org1525Journal of Pure and Applied Microbiology

Imperata cylindrica
(Marasmius palmivorus)
Hassan A. Tamur122,
Liqaa Y. Mohsin33
1Genec Engineering Department, Biotechniques College, Green University of Al Qasim, Iraq. 2Al-Mustaqbal
University College, Iraq. 3Department of Biology, College of Science, University of Babylon, Iraq.

      
Imperata cylindrical
Marasmius palmivorus 
ITS
M. palmivorus

      
            
M. palmivorus On the
M. palmivorusFusarium
solani and F. thapsinum, Penicillium sp., T. harzianum, and P. cyclopium
M. palmivorus,

 Marasmius palmivorus, Phylogenec structure, Antagonism.
www.microbiologyjournal.org1526
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology

Marasmius is a genus of mushroom-
forming fungi in the family Marasmiaceae, order:
Agaricales, class: Agaricomycetes, division:
Basidiomycota1. In 2005, Kirk2 listed 955 species
belonging to Marasmius in the Index Fungorum.
There has been recent aenon in understanding
worldwide biodiversity and the evolution of
Marasmius3-7.
Marasmius palmivorus is most
phonecally like to a complex of the Marasmiellus
species, which is reportedly pathogenic in a range
of economically important monocots, including
bananas, oil palms, sugar cane, corn, maize, taro
(Colocasia esculenta), turf grass, cocoa, and reed
plants8-14. Marasmius is not closely related to the
species Marasmiellus, as it is best to use its present
taxon – where it was originally described15, and
unl more data from mulple genes and a large
Marasmiaceae dataset provide the informaon to
clarify its taxonomic posion16.
Members of the genus Marasmius are
saprotrophic fungi, oen in forests, that play a
key role in the breakdown of wood and leaf lier,
nutrient cycling, and soil genesis; this is where
they serve an important ecological role in the
biodegradaon of lignocellulosic material17. Fiy
cultures, invesgated for enzyme acvies and
anmicrobial and anoxidant properes, indicate
that the Marasmius species may have potenal
applicaons in biotechnology17.
Based on our knowledge, there is no
scienc report available to characterize Imperata
cylindrical wilt disease, caused by the Marasmiys
genus. Therefore, the current study was carried
out to determine the molecular sequence of the
causave agent of this disease by sequencing the
ITS-5.8s-ITS2 region of rDNA and invesgang the
antagonisc potenal of this agent against fungal
pathogens; however, this is poorly documented,
and may be used to develop new biocontrol
agents.


Fusarium solani, F. thapsinum, Penicillium
sp., T. harzianum and Penicillium cyclopium are
procured from the Advanced Mycology Unit,
Biology Department, College of Science, University
of Babylon.

Disease samples from stems and rhizomes
of I. cylindrical are grown close to the reed plant
or in agricultural elds, and were collected from
20 agricultural elds in Babylon Province, Iraq,
in November, 2017. Samples were transferred to
the laboratory, with inoculaon and incubaon
conducted as described14. Identification of
fungal isolates were based on morphological and
microscopic features, such as characteriscs of
colony and mycelium clamp connecons, using
40X Microscopic Objecve Lens18,19.

Due to the similarity among all isolates of
Imperata Cylindrical Wilt Disease Fungus (IcWDF),
only one isolate was chosen for the following
experiments. The microbial cultures include IcWDF
isolate, Fusarium solani, F. thapsinum, Penicillium
sp., T. harzianum, and Penicillium cyclopium, which
were separately inoculated in petri dishes with
potato dextrose agar (PDA) (pH 7.0), followed
by incubaon for 5 days at 26 ± 2oC. To make the
slants, 20 ml of PDA was poured into glass tubes
and left until solidified. Fungal isolates were
maintained at 50C in a refrigerator, followed by
subculturing at regular intervals (every 30 days)20.

The inoculum of IcWDF was prepared
with 250 ml of millet seeds (Panicum miliaceum
L.) in conical asks, according to the procedure
described by Dewan and Sivasithamparam (1989)21
and others14,22.

Twenty uniform I. cylindrical plants at
similar age were selected from vegetable elds
and from the channels of irrigaon and planted
as described by Tamur et al.14. I. cylindrical plants
were grown for 2 months under glasshouse
condions (25±5 oC). The pots were then inoculated
individually with a causal agent, by mixing the
previously prepared inoculum in the pot soil at
a rate of 5% each. Ten pots without inoculaon
served as controls. The symptoms of disease were
reported at 15 days aer inoculaon14.

The fungal isolate from IcWDF was
recultured on PDA, as previously menoned, and
incubated at 28 ± 2oC for 3 days. The fungus cells
were collected and then transported to a new
sterilized tube for DNA extraction, which was
www.microbiologyjournal.org1527Journal of Pure and Applied Microbiology
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
achieved with a special puricaon kit (Genomic
DNA purification kit, Zymogene, Orlando, FL,
USA), and used according to the manufacturer’s
protocol.

Detecon of ITS gene was conducted by
using primers for amplicaon. A fragment 565 bp
of ITS was amplied using a forward primer (ITS1
F: 5' - TCCGTAGGTGAACCTGCGG -3') and a reverse
primer (ITS4 R:5' TCCTCCGCTTATTGATATGC-3')
(Primer set supplied by IDT (Integrated DNA
Technologies, Coralville, IA, USA). The PCR
amplicaon was performed in a volume of 25µl,
containing 1.5µl DNA, 5 µl Taq PCR Pre Mix (Intron
Biotechnology, Seoul, S. Korea), 1 µl of each primer
(10 pmol), at which point dislled water was added
into a tube for a total volume of 25 µl. The thermal
cycling condions were as follows: denaturaon at
94°C for 3 min, followed by 35 cycles of 94°C for
45 s, 52°C for 1 min, and 72°C for 1 min, with nal
incubaon at 72°C for 7 min, using a thermal cycler
(Gene Amp, PCR system 9700; Applied Biosystem,
Waltham, MA, USA). The PCR products were
separated by 1.5% agarose gel electrophoresis and
visualized by exposure to ultraviolet light (302 nm)
aer red staining (Intron, Seoul, S. Korea).
Gene sequencing was done at the
Naonal Instrumentaon Center for Environmental
Management (nicem) online (hp://nicem.snu.
ac.kr/main/?en_skin=index.html), biotechnology
lab, with a DNA sequencer 3730XL, Applied
Biosystems, Waltham, MA, USA). A homology
search was conducted using a Basic Local Alignment
Search Tool (BLAST) program, available at the
National Center of Biotechnology Information
(NCBI) online at (hp:// www.ncbi.nlm.nih.gov)
and the BioEdit program. Aer morphological and
molecular idencaon, these experiments were
carried out:
Marasmius palmivorus Temperature
The growth of M. palmivorus was
measured at various temperatures (15, 20, 25,
and 30oC). 20 ml PDA were added to sterile petri
dishs, each plate, was inoculated by taking 0.5 cm
from the edge of colonies. Plates were separated
into 5 groups before incubation for 3 days (4
replicates each). Radial growth of this fungus (from
two intersecng lines in the center of the dish.)
was daily esmated on an Petri plate unl full
expansion of growth, with dierent temperature
treatments clearly determined.
pH
Dierent ranges of pH (4.5, 5.5, 6.5, 7.5,
and 8.5) were established for the growth of M.
palmivorus, using a sterilized petri-dishes (20 ml
of PDA each). The inoculation, the incubation
process, and the fungal growth measurement were
achieved as described in the previous paragraph
(for temperature).
  Marasmius palmivoru  
nutrient sources
Dierent nutrient sources were prepared
by collecng leaves of wheat, I. cylindrical, and
reed (youngest expanded). Leaf samples were
dried in the shade, as well as in an oven (60÷C) for
48 h, and grinded into ne powder by an electronic
blender14. All leaf powders were stored in sterilized
containers unl usage23.
Preparaon of media was achieved by
dissolving 2 g of each nutrient source, in 100
ml of dislled water with or without dextrose
using a magnec srrer. Supplementaon with
dextrose and agar growth medium were carried
out at the same rate as for PDA, then mixed gently
and autoclaved at 15 psi for 15 min, with PDA
as a control treatment. Autoclaved media were
poured into petri plates for each type, with the
plates inoculated aer solidicaon with fungal
ssue (0.5 cm) taken from the edge of an M.
palmivorus colony (4 days old). Three replicates of
each source were taken and incubated for 6 days
at 28 ± 20C24. Radial growth was regularly recorded
as menoned before.
  Marasmius palmivorus:

The antagonistic activity of M .
palmivorus isolate was screened for the growth
of pathogenic and nonpathogenic fungi, including
Fusarium solani, F. thapsinum, Penicillium sp., T.
harzianum, and Penicillium cyclopium by using the
dual culture technique25. Five mm discs of tested
fungus were placed individually in the center of
each PDA plate half, whereas the other half was
inoculated with IcWDF followed by incubaon
at 26 ± 2°C, in a controlled experiment, with
each fungus grown on PDA. Growth inhibitory
antagonisc acvity of the tested fungus against
phytopathogenic fungi was assessed in terms of
www.microbiologyjournal.org1528
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology
percent inhibion in cm by using this formula26:
Inhibion % = (r1-r2/r1) ×100,
where, r1 is the diameter of
phytopathogenic fungal growth without IcWDF,
while r2 is represents the radial growth of the
pathogenic fungus with IcWDF. Furthermore, all
treatments were carried out in three replicates.

The current work were arranged in a
randomized complete block design. Data were
assessed by analysis of variance. The level of
significance was determined by Fisher’s least
signicant dierence (LSD) comparisons at the 5%
probability level.

Marasmius palmivorus

Infecon of I. cylindrical by IcWDF fungus
was appeared as wilt symptoms on stems and
rhizomes, which produced blight symptoms on the
leaves. Symptoms primarily iniated on the base
of the stem’s lower secon as brown to black rot
lesions. Mycelium which was grown rapidly show
u as white coony growth around the plant base
(Fig. 1A).
IcWDF isolate was tentavely idened
as M. palmivorus, according to colony features.
Microscopic observaon revealed that this fungus
produced wilt colonies on petri dishes and covered
the plate within 3 to 4 days at 28 ± 2oC, with
hairy-branched and hyaline mycelium (Fig. 1B).
Colonies were creamy aer 10 days of inoculaon.
Septaon is recognized in the fungal mycelium (Fig.
1C), with clamp connecons clearly disnguished
(Fig. 1D). Spores, and reproductive aspects
were not observed under the light microscope
examinaon, with a temperature range of 28 ± 2oC.
The macroscopic fruing body of M. palmivorus
was not detected under lab condions.

The signs and symptoms of M. palmivorus
were conrmed according to Koch’s postulates.
Dierent symptoms of I. cylindrical wilt disease
were recorded aer 2 weeks and found to be
similar to symptoms observed during natural
 Disease symptoms of wilt disease caused by M. palmivorus on I. cylindrical plants at 15 days aer inoculaon
(A), morphological feature of M. palmivorus growing on PDA at 28 ± 2oC aer 4 days of incubaon (B), septal wall
of fungal hyphae (C), and clamp connecons (D), under a light compound microscope, 25 µm (40X-1 at 10 days
aer incubaon)
www.microbiologyjournal.org1529Journal of Pure and Applied Microbiology
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
 Phylogenec tree, depicng the relaonship of M. palmivorus
infection. In controlled experimentation, no
disease symptoms appeared. Death of I. cylindrical
plants tended to occur aer 3 weeks, while the
infecon process increased in moist circumstances.

In this study, the conrmaon process
of one isolate, M. palmivorus, was conducted by
convenonal PCR technique to detect the presence
of a specic gene, with sequence analysis of the
ITS1-5.8s-ITS2 region, and BLAST analysis from
the NCBI database. Aer sequencing, this isolate
was idened. The extracted genomic DNA of
these isolates was used as a template spacer
(ITS). The PCR amplicaon products show that
M. palmivorus yielded about 565 pb. The product
is shown in Fig. 2.
PCR product, the band size of 565 bp. The product was electrophoresis on 1.5% agarose at 5 volt/cm2. Also,
1x TBE buer for 1.5 h, DNA ladder (100), lane (1 to 2) PCR product of band size 565 bp, visualized under UV light
Phylogenec analysis by rDNA sequencing
found a genec variaon among isolates from M.
palmivorus in other countries. BLAST results were
explored by searching with partial nucleotide
sequences at the gene bank database (Table 1).
A phylogenec isolate tree in Iraq showed
a close relaonship with M. palmivorus in India,
idened at 99% (4 KC771224.1), in the Philippines
at 98% (4 KR05 6289.1), and in Kenya at 98% (9
KT27 3356.1). M. palmivorus in Malaysia was
idened at 98% (7 JQ65 3440.1), with a distant
relaonship to M. palmivorus (MG717877) in Iraq
(Fig. 3 and Table 1).
 Marasmius palmivorus
Temperature
The results of this study revealed a
substanal eect of temperature (Fig. 4) for the
growth of M. palmivorus. The opmum growth
occurred at 30°C after a 3-day incubation,
followed by 25°C, then 20°C, while the lowest
growth occurred at 15oC. The rising or lessening
temperatures below 15°C, or higher than 30°C,
caused obstrucon of M. palmivorus growth.
www.microbiologyjournal.org1530
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology
 Eect of dierent temperatures: 15oC (A), 20oC (B), 25oC (C), and 30oC (D) in the growth diameter of M.
palmivorus on PDA aer 3 days of incubaon (LSD(0.05)=0.263)
pH
As a constant, pH (4.5, 5.5, 6.5, 7.5, and
8.5) has a signicant eect on the growth of M.
palmivorus with PDA, at temperatures 28 ± 2˚C.
Maximum growth of M. palmivorus was obtained
at pH 7.5 (8 cm), followed by pH 6.5 (6.3 cm), with
the radial growth of this fungus increasing at pH
5.5 (6 cm), which was less than pH 7.5 and 6.5, and
higher than pH 8.5 (5 cm). Growth of this fungus
decreased to 4.5 cm at pH 4.5 at the end of the
incubaon (Figs. 5A and 5B).
  Marasmius palmivorus  
nutrient sources
Growth of M. palmivorus varied
considerably, according to the composition of
growth media, which was most profound with
wheat and reed leaves, supplemented with
powdered material in the medium (Fig. 6).
Therefore, the growth diameter of M. palmivorus
was dramacally aected by the source of the
added nutrient. Aer 4 days of incubaon, the
growth of the tested fungus signicantly diered in
Eect of dierent pH levels (4.5, 5.5, 6.5, 7.5, and 8.5 on colony growth of M. palmivorus aer 4 days of
incubaon)
Homology sequence idened for local Marasmius palmivorus isolate
Accession Gene country Source Compability
ID: MG251431.1 18S ribosomal RNA India Marasmius palmivorus 99%
ID: MF100969.1 18S ribosomal RNA USA Marasmius palmivorus 98%
ID: KR056289.1 18S ribosomal RNA Philippines Marasmius palmivorus 98%
ID: KJ865843.1 18S ribosomal RNA India Marasmius palmivorus 98%
ID: JQ653445.1 18S ribosomal RNA Malaysia Marasmius palmivorus 98%
ID: JQ653435.1 18S ribosomal RNA Malaysia Marasmius palmivorus 98%
ID: MF100965.1 18S ribosomal RNA USA\ California Marasmius palmivorus 98%
ID: KT273356.1 18S ribosomal RNA Kenya Marasmius palmivorus 98%
ID: KR056290.1 18S ribosomal RNA Philippines Marasmius palmivorus 98%
ID: JQ653446.1 18S ribosomal RNA Malaysia Marasmius palmivorus 98%
www.microbiologyjournal.org1531
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology
Eect of dierent pH levels (4.5, 5.5, 6.5, 7.5, and 8.5) on growth diameter of M. palmivorus aer 4 days
of incubaon (LSD(0.05)=0.377)
  Colony growth of M. palmivorus on culture
media from powdered leaves of the following plants
with dextrose (1) and without dextrose (2): A (wheat),
B (reed), C (I. cylindrica), and D (PDA) aer 4 days of
incubaon at 30oC
wheat (6.8), reed (9), caladium (8.5) supplemented
with dextrose, compared to PDA. In contrast, the
average growth reached 5.5, 8.3, and 7.1 in wheat,
reed, and caladium, respecvely, which were not
supplemented with dextrose (compared to PDA).
Thus, proporonal fungal growth was increased in
all formulated media with and without dextrose,
except in the wheat treatment, which was not
supplemented with dextrose (Fig. 7).

Substantial antagonistic effect of M.
palmivorus was appeared against F. solani and
F. thapsinum, in the range of 70-100% at 6 to 8
days aer incubaon, respecvely. The growth
inhibitory percentages of RBDF isolate were 33%
(Penicillium sp.), 14-62% (T. harzianum), and 20-
Growth diameter of M. palmivorus on culture media of powdered leaves of the following plants with dextrose
(1) and without dextrose (2): A (Wheat), B (Reed), C (I. cylindrica), and D (PDA) aer 4 days of incubaon at 30oC.
(LSD(0.05)=0.631)
www.microbiologyjournal.org1532Journal of Pure and Applied Microbiology
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
50% (P. cyclopium) within the 6th – 8th days aer
incubaon, respecvely. The most remarkable
antagonism was observed with T. harzianum, in
which Marasmiellus sp. started to grow over the
already-grown ssues of T. harzianum. Another
excing results about antagonism were occurred
between Penicillium sp. and M. palmivorus, where
in spite of the fast growth of the Penicillium sp.
covering nearly 70% of the petri area, the fungal
mycelia of M. palmivorus rapidly approached
Penicillium sp.; this then directly inhibited its
growth upon contact (Figs. 8 & 9).
Antagonisc eciency of M. palmivorus towaed: F. solani (A1), F. solani + M. palmivorus- front face (A2), F.
solani + M. palmivorus- reverse face (A3), F. thapsinum- alone (B1), F. thapsinum + M. palmivorus- upper face (B2),
F. thapsinum + M. palmivorus- lower face (B3), Penicillium sp. alone (C1), Penicillium sp. + M. palmivorus- front face
(C2), Penicillium sp + M. palmivorus - reverse face (C3), T. harzianum (D1), T. harzianum. + M. palmivorus-4 d.a.i.
(D2), T. harzianum + M. palmivorus- 8 d.a.i. (D3), Penicillium cyclopium (E1), Penicillium cyclopium. + M. palmivorus-
fron face (E2), Penicillium cyclopium + M. palmivorus- reverse face (E3), Control, M. palmivorus (F) at 28 ± 2oC
www.microbiologyjournal.org1533
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology

Imperata cylindrical plants are known
to invade agriculture elds and irrigaon channel
systems in the majority of agriculture lands in
Iraq. In the present study, the observaons of
disease symptoms and the distribuon of disease
demonstrated that the rate of wilt disease on I.
cylindrical by M. palmivorus varied according to
agricultural region, weed intensity, and type of soil.
Based on colony characteristics, like
the appearance of clamp connecons in fungal
tissues (mycelium), this fungus was identified
as Marasmius palmivorus. This nding is closely
harmonious with the observaons presented by
Singer (1973)8.
The generic situaon of M. palmivorus
is quesonable, since it’s morphology is quite
similar to that in Marasmiellus than to Marasmius
sensu stricto19. The original was published as M.
palmivorus by Corner (1996)27. In 2005, Wilson and
Desjardin7 formally proposed including this taxon
as Marasmiellus palmivorus, but the proposal
was not accepted, and there is no taxon available
as Marasmiellus palmivorus. Some workers read
the formal proposal of Wilson and Desjardin, but
wrongly named their collected taxon Marasmiellus
palmivorus; they published some of this work as
well16.

The transformave history was deduced
by ulizing the Neighbor-Joining method (NJ)28.
The ideal tree with the enrety branch length
= 0.01559401 is appeared. The tree is drawn to
scale, with branch lengths in the similar units
as the evoluonary distances used to conclude
the phylogenec tree. These separaons were
processed with the most extreme Composite
Likelihood Method29, and are in units of the
number of base substitutions per site. The
invesgaon included 21 nucleode sequences.
Codon positions included were
1st+2nd+3rd+Noncoding. All posions containing
gaps and missing data were eliminated. There
were a enre of 325 locaons in the nal dataset.
Evoluonary analyses were conducted in MEGA730.
The mulple sequence alignment analysis
of paral 18S ribosomal RNA gene sequence for
local M. palmivorus isolate and the NCBI gene
bank, using Mega 7, was a mulple alignment
analysis tool. Sequence comparisons of the ITS
region are broadly utilized in taxonomy and
molecular phylogeny, as it is direct to enhance
from lile amounts of DNA (due to the high copy
number of rRNA genes), including that there is
a high level of variaons between rmly related
species
It has been demonstrated that paral
18S ITS1 5.8S ITS2, and paral 28S ribosomal RNA
gene sequence data on an individual strain with
the nearest neighbor, and exhibing a similarity
score of < 97%, represents a new species; however,
the meaning of similarity scores > 97% is not
as clear. The rst step of alignment analysis for
all sequences in this study with other selected
references used the (Clustal W) program step in
MEGA 6.0. This program demonstrated an accurate
degree of identity with all world sequences,
including those in this study. The results with
Inhibion percentage in A (F. solani), B (F. thapsinum), C (Penicillium sp.), D (T. harzianum) and E (Penicillium
cyclopium) grown in PDA aer 6 and 8 days of incubaon during the antagonism with Marasmius palmivorus
www.microbiologyjournal.org1534Journal of Pure and Applied Microbiology
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
(Clustal W) are important, because they were
directly used in the phylogenec tree construcon,
and agreed with previous studies using specic
primers, The rmly related taxa possess similar
fragment distribuons, while the remotely related
taxa are increasingly dissimilar, thus providing
impressive phylogenec data 31.
The mulple alignment analysis showed
similarity and dierences in 18S ribosomal RNA
gene nucleotide sequences. This corresponds
to the study by Tom ovsk et al.32, in which it
was revealed that all Trametes species form a
single clade. The ITS region showed the highest
fungi ecology33 and was recommended to be the
universal fungal barcode sequence34.
A nucleode was used with a maximum
likelihood of detecng the relaonship of world
and local sequences, which was the preferred
method of nucleode sequences in MEGA 6.0: it
uses the NJ method, a simplied version of the
Minimum Evoluon (ME) method. The NJ method
produces an unrooted tree, as it does not require
a constant rate of evolution. Finding the root
requires an out-group taxon28. Further studies
with dierent gene sequences will resolve this in
the phylogenec analysis of fungi35.
Dua and Acharya (2018) reported that
nrITS and nrLSU sequences of M. palmivorus
were 760 and 593 bp, respecvely, which were
deposited in the GenBank database with accession
numbers MG251431 (for nrITS) and MG251441
(for nrLSU). Based on BLAST searches in the NCBI
database, they had the most similarity to the taxon
from Malaysia [GenBank JQ653433; identities
= 717/726(99%), gaps = 3/726(0%)], Hawaii
[GenBank AY639434; idenes = 592/593(99%),
and gaps = 0/593(0%)]16.
Marasmius palmivorus
Culture media is viewed as one of the
fundamental necessies for the development and
improvement of fungi. M. palmivorus was found
to grow a lot quicker in supplemented growth
medium of powdered leaves, comprising of wheat,
reed, and caladium, compared with PDA; this
suggests that there are preferable growth sources
with the possibility to substute the ulizaon of
PDA for culturing M. palmivorus.
The alteraon in growth paerns was
studied by Thiruchchelvan et al.36
, which observed
that at 4 days’ incubaon of fungus on PDA, King
yam and Elephant foot yam media were more
preferable for fungal growth than that in lter
paper, sago nutrient agar, and water agar. Another
study acheived by Ravimannan et al.37 showed
the ulity of legume seeds (cowpea, green gram,
black gram, and soya meat) for the growth of
Trichoderma, Scleroum, Fusarium, Aspergillus,
and Penicillium sp.
The antagonisc eect of Basidiomycetes
mushroom on the growth of plant pathogenic
fungi can be used as a promising biocontrol
system. The results of this study show the
broad spectrum of antagonistic activity of M.
palmivorus to pathogenic fungi, such as F. solany,
F. thapsinum, P. cyclopium, and T. harzianum. M.
palmivorus surprisingly colonizes the anbioc
eect of T. harzianum, which indicates overgrowth
of M. palmivorus or production of antifungal
substance(s) against the tested fungi.
However, the growth of M. palmivorus
was found to be suppressed by Penicillium sp., as
they reached the vicinity of the other. This might
be due to the producon of toxic substance(s)
by Penicillium sp., which undermine the growth
of M palmivorus. In the present scenario, one
interesng aspect to be invesgated is the possible
mechanisc insight behind the biocontrol acvies
of such a fungus. One potenal mechanism of
antagonism behavior of M. palmivorus can be
associated with nutrients and niche compeon.
In addion, the anbiosis eect of M. palmivorus
against soil-borne fungi, as well as weed plants,
may also be associated with the producon of
volale and nonvolale compounds. Previously,
it was documented that the antagonisc eect
of a living cell might be due to the release of
extracellular bioacve molecules.
The present results disagree with
those of Thiruchchelvan et al.36, in which they
report that Trichoderma sp. causes growth
inhibion of Marasmiellus sp. up to 92% under
in vitro conditions. The antifungal activity of
T. harzianum to fungal pathogens have been
reported: Aspergillus niger, A. avus, Phytophthora
sp., Fusarium oxysporum, Rhizoctonia solani,
Penicillium notatum, and Alternaria solani38.

To the best of our informaon, this is
the rst record of the presence of M. palmivorus
www.microbiologyjournal.org1535
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology
in Iraq, and likely around the world for weeds.
Using M. palmivorus as a biocontrol agent against
I. cylindrical plants is a new approach. The earliest
experimental studies also show the selective
acon of M. palmivorus against weeds, without
causing any deterioraons to neighboring plant
seedlings. However, further studies are required
to explore its selecve herbicidal acvity in the
near future.

Authors would like to thank the Ministry of Science
and Technology - Babylon Secon - for providing
formal facilies to Mr. Tamur, and the Department
of Biology, University of Babylon, for technical
assistance. Authors are also thankful to Prof. Ali
H. K. El-Bahadili for scienc advice.
CONFLICT OF INTEREST
The authors declares that there is no
conict of interest.

All authors listed have made a substanal,
direct and intellectual contribuon to the work,
and approved it for publicaon.

This work was nancially supported by
the Department of Biology, College of Science,
University of Babylon, Iraq.

All datasets generated or analyzed during
this study are included in the manuscript.
ETHICS STATEMENT
This arcle does not contain any studies
with human parcipants or animals performed by
any of the authors.
REFERENCES
1. Tan Y-S, Desjardin DE, Vikineswary S, Noorlidah A.
Basidiomycota: The genus Marasmius in Peninsular
Malaysia. In: Malaysian Fungal Diversity (eds. E.B.G.
Jones, K.D. Hyde and S. Vikineswary). Xxxx, Malaysia,
2007, 61-73.
2. Kirk PM. Species Fungorum (version 18th May 2015).
In: Species 2000 & ITIS Catalogue of Life. 2015.
Retrieved 2015-06-17.
3. Antonםn V. Supplements to the monograph of
tropical African species of Marasmius (Basidiomycota,
Marasmiaceae). Cryptogamie Mycol. 2013; (2): 113–
135. hps://doi.org/10.7872/crym.v34.iss2.2013.113.
4. Antonםn V, Noordeloos ME. A monograph of
marasmioid and collybioid fungi in Europe. Eching,
IHW Verlag. 2010; .
5. Wannathes N, Desjardin DE, Hyde KD, Perry BA,
Lumyong S. Fungal Div. 2009; 37: 209–306.
6. Desjardin DE, Ovrebo CL. New species and new records
of Marasmius from Panama. Fungal Div. 2006; 21: 19-
39.
7. Wilson AW, Desjardin DE. Phylogenec relaonships in
the gymnopoid and marasmioid fungi (Basidiomycetes,
euagarics clade). Mycol. 2005; (3): 667–679. hps://
doi.org/10.1080/15572536.2006.11832797
8. Singer, R. The genera Marasmiellus, Crepidotus and
Simocybe in the neotropics. Beih. Nova Hedwigia.
1973; : 1–517.
9. Miller GL, Desjardin DE, Tredway LP. First Report of
Marasmiellus mesosporus causing Marasmiellus Blight
on Seashore Paspalum. Plant Dis. 2010; (11): 1374.
hps://doi.org/10.1094/PDIS-06-10-0424
10. Almaliky BSA, Mior Ahmad MA, Kadir J, Mui W.
Pathogenicity of Marasmiellus palmivorus (Sharples)
Desjardin comb. Prov. on Oil Palm Elaeis guineensis.
Wulfenia 2012; (8): 144-160.
11. Pong VM, Zainal Abidin MA, Almaliky BSA, Kadir J,
Wong MY. Isolaon, Fruing and Pathogenicity of
Marasmiellus palmivorus (Sharples) Desjardin (comb.
prov.) in Oil Palm Plantations in West Malaysia.
Pertanika J. Trop. Agric. Sci. 2012; : 38 – 48.
12. Thiruchchelvan N, Thirukkumaran G, Mikunthan G.
Banana stem rot disease; causal agent (Marasmiellus
sp.), host range and selecon of low cost media for
its culvaon. J. Nat. Prod. Plant Resour. 2013; 3(2):
97-104.
13. Amoako-Aah I, Akro AY, Bin Hakeem R, Asamoah
M, Kumi-Asare E. White thread blight disease
caused by Marasmiellus scandens (Massee) Dennis
& Reid on cocoa and its control in Ghana. African J.
Agricultural Res. 2016; 11(50): 5064-5070. hps://
doi.org/10.5897/AJAR2016.11681
14. Tamur HA, Mohsin LY, Al-Janabi JKA, Al-Yassiry ZAN.
Marasmiellus palmivorus as a new causal agent of
Reed Wilt disease in Iraq. Pak. J. Biotechnol. 2018;
(1): 29-35.
15. Sharples A. Palm diseases in Malaya. Malayan Agric.
J. 1928; (9–10): 313–360.
16. Dua, AK, Acharya K. A new host for the parasic
macrofungus Marasmius palmivorus Sharples
(Marasmiaceae). Current Sci. 2018; 114 (7): 1400-1402.
hps://doi.org/10.18520/cs/v114/i07/1400-1402
17. Tan Y-S, Desjardin DE, Perry BA, Vikineswary S,
Noorlidah A. Marasmius sensu stricto in Peninsular
Malaysia. Fungal Diver. 2009; 37: 9-100.
18. Kirk PM, Cannon PF, Minter DW, Stalpers, JA. Diconary
of the Fungi, 10th ed. CABI, Wallingford, UK, 2008.
19. Desjardin DE, Perry BA. The gymnopoid fungi
(Basidiomycota, Agaricales) from the Republic of
Sדo Tomי and Prםncipe, West Africa. Mycosph.
2017; 8(9): 1317–139. https://doi.org/10.5943/
mycosphere/8/9/5
20. Obaid AJ, Al-Janabi JKA, Taj-Aldi WR. Antifungal
www.microbiologyjournal.org1536Journal of Pure and Applied Microbiology
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Acvity of Anise Essenal Oil against Growth and
Morphological Characteristics of Trichophyton
Rubrum. J. Global Pharma. Technol. 2017; 7(9): 53-68.
21. Dewan MM, Sivasithamparam K. Ecacy of treatment
with a sterile red fungus for control of take-all in wheat.
New Zealand J. Crop Horcul. Sci. 1989; 17: 333-336.
hps://doi.org/10.1080/01140671.1989.10428053
22. Alnuaimy, AA, Al-Janabi JKA, Al-Obaidi LAH, Marjan
AF. The expression of resistance genes in tomato
induced by abioc and bioc factors against Fusarium
oxysporum f. sp. lycopersici. Internaonal J. Chem.
Tech. Res. 2017; (6): 838-850.
23. Umechuruba CF, Elenwo EN. Diagnosc Techniques
in Mycology. Beek Publishers, Port Hercout. 1999,
30 – 56.
24. Mohsen LY, Kadhim HJ, Al-Janabi JKA, Al-Yassiry ZAN.
Alternave culture media for growth and sporulaon
of Trichoderma harzianum. Pak. J. Biotechnol. 2017;
(4): 587-593.
25. Cherif M, Benhamou N. Cytochemical aspects of
chitin breakdown during the parasitic action of
a Trichoderma sp. on Fusarium oxysporum f. sp. radicis-
lycopersici. Phytopathol. 1990; : 1406-1414.
26. Kulkarni NS, Lingappa S. Compatibility of
entomopathogenic fungus Nomuraea rileyi (Farlow)
Samson with a fungicide carbendazim. Karnataka J.
Agric. Sci. 2001; (3): 819-821.
27. Corner EJH. The agaric genera Marasmius,
Chaetocalathus, Crinipellis, Heimiomyces, Resupinatus,
Xerula and Xerulina in Malesia. Beih. Nova Hedwigia
1996; 111: 1-175.
28. Saitou N, Nei M. The neighbor-joining method: A new
method for reconstrucng phylogenec trees. Mol.
Biol. Evol. 1987; (4):406-25.
29. Tamura K, Nei M, Kumar S. Prospects for inferring
very large phylogenies by using the neighbor-joining
method. Proc. Nat. Acad. Sci. (USA) 2004; : 11030-
11035. hps://doi.org/10.1073/pnas.0404206101
30. Kumar S, Stecher G, Tamura K. MEGA7: Molecular
Evoluonary Genecs Analysis version 7.0 for bigger
datasets. Mol. Biol. Evol. 2015; 33(7):1870–1874.
hps://doi.org/10.1093/molbev/msw054
31. Frye SR, Healy M. Molecular strain typing using
repetitive sequence-based PCR, In: Tang, Y.-W.,
Stratton, C.W. (Eds.), Advanced Techniques in
Diagnosc Microbiology, 1st ed. Springer, New York,
2006, 444–471. hps://doi.org/10.1007/0-387-32892-
0_26
32. Tom ovsk M, Kolaֽםk MS, Paסoutovב S, Homolka
L. Molecular phylogeny of European Trametes
(Basidiomycetes, Polyporales) species based on
LSU and ITS (nrDNA) sequences. Nova Hedwigia
2006; 3: 269-280. https://doi.org/10.1127/0029-
5035/2006/0082-0269
33. Peay KG, Kennedy PG, Bruns TD. Fungal community
ecology: a hybrid beast with a molecular master. BioSci.
2008; : 799–810. hps://doi.org/10.1641/B580907
34. Schoch, CL, Seifert KA, Huhndorf S, Robert V, Spouge
JL, Levesque CA, et al. Nuclear ribosomal internal
transcribed spacer (ITS) region as a universal DNA
barcode marker for Fungi. Proc. Nat. Acad. Sci. (USA)
2012; : 6241–6246.
35. Pe CA. Detecon and idencaon of microorganisms
by gene amplicaon and sequencing. Clin. Infect. Dis.
2007; : 1108–1114. hps://doi.org/10.1086/512818
36. Thiruchchelvan N. Thirukkumaran G, Mikunthan G. In
vitro Biological Control of Marasmiellus sp. The Causal
of Stem Rot of Banana Grown in Jana Peninsula, Sri
Lanka. Acad. J. Plant Sci. 2012; (3): 94-101.
37. Ravimannan N, Arulanantham R, Pathmanathan S,
Niranjan K. Alternave culture media for fungal growth
using dierent formulaon of protein sources. Ann.
Biol. Res. 2014: : 36-39.
38. Patale SS, Mukadam DS. Management of plant
pathogenic fungi by using Trichoderma species. Biosci.
Discov. 2011; 2(1): 36-37.
... M. palmivorus, previously identified at the molecular levels' strain SCHD66 internal transcribed spacer (ITS) 1, partial sequence; 5.8S ribosomal RNA gene, comprehensive categorization; and ITS 2, partial sequence was obtained from Prof. Jawad K. Abood Al-Janabi, Advanced Mycology Lab., Biology Department, Science College, Babylon University, Iraq. M. palmivorus was grown and maintained according to Tamur et al., 2019. [17] Collection of Specimens Seventy-five samples (from the skin, hair, and nails) were collected from patients attending Al-Hussein Hospital (Dermatology and Venereal Disease Unit) in Kerbala Province, Iraq, from February 2018 to November 2018. ...
... M. palmivorus was grown and maintained according to Tamur et al., 2019. [17] Collection of Specimens Seventy-five samples (from the skin, hair, and nails) were collected from patients attending Al-Hussein Hospital (Dermatology and Venereal Disease Unit) in Kerbala Province, Iraq, from February 2018 to November 2018. The patients presented with different types of tinea. ...
... It reduced the development of T. rubrum at all concentrations; however, the decrease in growth diameter of this pathogen reached around 50% at a concentration of 8%, which may have been due to its chemical composition, which diffused in broth using secondary metabolism products, producing polysaccharides, proteins, enzymes, and triterpenoids to inhibit fungal growth. [13,17,[44][45][46] The inhibitory effect of M. palmivorus may be attributable to the presence of particular toxic constituents that poison the cell or increase the osmotic pressure, causing disturbances in the fungal growth; this is reflected in the growth and development of the reproductive structures. [31] Transcription PCR Assay Reverse Quantitative Real Time ...
Article
Full-text available
Background: Trichophyton rubrum is a common anthropophilic fungal species. It is the primary causative dermatophytosis agent in the world, infecting the skin, feet, and the area between the fingernails. Aim: The present study examines the molecular characteristics of T. rubrum isolates and the bioactivity of Marasmius palmivorus filtrate against this fungus. Materials and Methods: Clinical isolates were collected from patients with different varieties of tinea who attended the Al-Hussein Hospital (Dermatology and Venereal Disease Unit) in Kerbala Province from February to November 2018. Results: Four T. rubrum isolates were identified based on their morphological and molecular features and were registered in the International GenBank with the accession numbers: MK167434, MK167437, MK167442, and MK167443, revealing close relationship with National Center for Biotechnology Information-Blast T. rubrum (MH865940.1). The phylogenetic tree of internal transcribed spacer rRNA sequences showed that the T. rubrum isolates (numbers 1, 2, 5, and 6) were closely related to global isolates of the same fungus. The results showed that this fungus could produce protease enzymes. M. palmivorus filtrate (2%, 4%, 6%, and 8%) showed an inhibitory influence on T. rubrum growth through the distortion of fungal structures (presence of abnormal mycelium and cell lysis). Gene expression was detected by quantitative real-time polymerase chain reaction (PCR) using the specific primer β-tubulin (housekeeping gene), a serine protease, citrate synthase, and MEP4. The amplification accuracy of the gene product was observed. The data revealed high gene copy amplification in serine protease, citrate synthase, appeared the accumulation of product through the duration of the qPCR experiment, but on the contrary, it happened with MEP4, which indicates protein lysis. Conclusion: The results of this study will aid in the development of innovative and novel effective drug targets and antifungal agents using M. palmivorus. KEY WORDS: Marasmius palmivorus filtrate, Molecular characteristics, Trichophyton rubrum
... Marasmius palmivorus showed hypha with a thread-like structure under x1000 magnification of a compound microscope. The image by Tamur et al. (2019) in Table S7 showed the septal wall of fungal hyphae with the clamp connection between hyphae, which was also shown by the microscopic observation of M. palmivorus. The branched rough hypha structure was absent of conidiophores. ...
... The microscopic structure of M. palmivorus (a) morphology on PDA agar media, (b) The microscopic structure of M. palmivorus, (c) The morphology reference of M. palmivorus(Tamur et al., 2019) ...
Article
Full-text available
Oil palm frond (OPF) is a palm oil plantation by-product commonly used in animal feeding in Malaysia. The large production, availability, and nutrient content make OPF the best candidate for utilization as animal feed. However, OPF contains high lignin bonds to cellulose and hemicellulose that further limit the digestibility of rumen microbes to produce volatile fatty acids as an energy source for ruminants. This study aims to identify and determine the enzyme activity (ligninolytic, cellulolytic, and hemicellulolytic) of enzymes extracted from filamentous fungi in the pre-treatment of OPF using the solid-state fermentation (SSF) technique. The enzyme extracted from SSF was determined by its enzyme activity (laccase, lignin peroxidase, manganese peroxidase, carboxymethylcellulose, avicelase, and xylanase). Eight fungi were successfully identified to produce enzymes determined in this experiment. Phanerina mellea showed the highest average ligninolytic enzyme activity with a value of 0.37 U/mL and an average cellulolytic + hemicellulolytic of 0.18 U/mL. In this experiment, P. mellea was the most desired fungi for the pre-treatment of OPF. The optimum ligninolytic enzyme production time of OPF pre-treatment is 10 days of SSF.
... Hasil pengamatan makroskopis jamur M. palmivorus yang diperoleh setelah diinkubasi jamur berwarna putih putih krem, bertekstur halus, dengan miselium bercabang berbulu, berbentuk seperti kipas dan pada 6 hsi terlihat jika jamur hampir memenuhi media serta terdapat cincin konsentris yang mengelilingi media (Gambar 1). Hal tersebut searah dengan penelitian Tamur et al. (2019) bahwa pada pengamatan menunjukkan bahwa jamur ini menghasilkan layu pada cawan petri dan menutupi cawan tersebut dalam waktu 3 sampai 4 hari pada suhu 28± 2C, dengan miselium bercabang berbulu, berwarna krem setelah 10 hari inokulasi. Hal tersebut juga searah dengan penelitian Sridhar et al. (2022) bahwa Jamur tersebut menghasilkan miselia kapas, berwarna keputihan, berbentuk seperti kipas dengan tepi berbulu, ketika diinkubasi pada suhu sekitar 27± 2°C. ...
Article
Full-text available
Fruit bunch rot disease on oil palms can cause a decrease in oil palm productivity in Riau Province. An alternative to controlling oil palm bunch rot disease can be using an organic fungicide, namely chitosan. Research aims to identify the causes of oil palm bunch rot disease and test the effect of chitosan concentration in inhibiting this fungus in vitro. The treatments in this study were several concentrations of chitosan (K) consisting of: K0 = Chitosan 0 g.l-1; K1 = Chitosan 2.5 g.l-1; K2= Chitosan 5 g.l-1; K3 = Chitosan 7.5 g.l-1; K4 = Chitosan 10 g.l-1. The chitosan application was analyzed statistically using variance based on the F test at the 5% level using the SPSS application. Research results The cause of oil palm bunch rot disease in Pongkai Village, District XIII Koto Kampar, Kampar Regency, Riau is Marasmius palmivorus based on its morphology. Providing concentrated chitosan able to inhibit the growth of Marasmius palmivorus in vitro. Chitosan concentrations of 2.5 g.l-1, 5 g.l-1, 7.5 g.l-1, 10 g.l-1 able to inhibit the growth of the fungus Marasmius palmivorus with respective inhibitions of 36.52%, 45.68%, 50.55 %, 64.16%, The higher the chitosan concentration, greater the inhibition of fungal growth that occurs.
... The species belonging to this genus are saprotrophic and are commonly found on decayed leaves, trunks, branches, twigs, and wood debris in forest litter. They play a significant role as decomposers in maintaining the sustenance of the forest ecosystem (Tamur et al. 2019). The genus Marasmius has a global distribution, encompassing more than 600 known species (Lodge et al. 1995;Wannathes et al. 2009a;Tan et al. 2009;. ...
Article
Full-text available
This research reveals a significant contribution to fungal taxonomy through the integration of morphological and phylogenetic analyses, utilizing ITS and 28S sequences. Focused on the Marasmius genus in Pakistan, the combined approach has successfully identified a new species, namely M. pakistanicus, and a new record, M. paratrichotus. The new species is characterized by its small orange pileus with a grooved surface, creamy lamellae, lacrymoid to subcylindrical basidiospores, broadly clavate cheilocystidia, and a hymeniderm pileipellis composed of inconspicuous or broadly clavate elements. This study enhances our knowledge of fungal diversity by scrutinizing both morphological traits and genetic profiles. The morphological and phylogenetic analyses based on the combined ITS-28S dataset confirmed that both species belong to the Marasmius sect. Sicci. These findings not only broaden our understanding of local fungal biodiversity but also underscore the efficacy of a comprehensive methodology. They emphasize the synergy between morphology and phylogenetics as instrumental in advancing our knowledge of fungal communities.
... The genus Marasmius Fries (1835: 339) (Marasmiaceae, Agaricales) contains more than 600 species recorded throughout the world (Wannathes et al. 2009, Dutta & Krishnendu 2018, Pham et al. 2020, with most species saprotrophic in nature. Members of this genus are usually found on decayed leaves, trunks, branches, twigs and wood debris in forest litter; play a significant role as decomposers for the sustenance of forest ecosystem (Tamur et al. 2019). Species of genus Marasmius are characterized by marasmioid or collybiobid basidiomata, small to medium in size, a glabrous, smooth radially-sulcate or grooved pileus, lamellae collariate or non-collariate, insititious or non-insititious stipe, pale cream to white spore-print, thin-walled, hyaline, smooth and non-dextrinoid basidiospores (Antonίn & Noordeloos 2010). ...
Article
Marasmius margallensis sp. nov. of sect. Sicci from Margalla hills, Islamabad, Pakistan, is described and illustrated, based on morphological characteristics and multigene phylogenetic analyses. The taxon is characterized by a pale yellow to dull orange pileus with light gray margins, clavate to narrowly fusiform basidiospores, rather short pleurocystidia and hymeniderm pileipellis with Siccus-type broom-cells. Marasmius pulcherripes is closest relative of the newly described species M. margallensis in sect. Sicci in phylogenetic analyses but the later one is distinct by macro-, and micro-morphological features and molecular data.
... However, biological control and revegetation were recommended for the long-term management of the weed species ( Lebrun 2020;Rusdy 2020). Bioherbicides, such as the type causing wilt disease in cogongrass could also be introduced (Tamur et al. 2019). However, invasive plants like cogongrass in forest regeneration ought to be considered in the management strategies assisting the persistence of native forest communities (Lázaro-Lobo et al. 2021). ...
Article
Full-text available
Susanto AH, Dwiati M. 2022. Short Communication: Assessment of cogongrass (Imperata cylindrica (L.) P.Beauv.) genetic variation in Java, Indonesia using atpB-rbcLand trnL-F intergenic spacer. Biodiversitas 23: 2760-2767. Cogongrass (Imperata cylindrica(L.) P.Beauv.) is an invasive species commonly found in tropical and subtropical regions worldwide, consequently threatening global plant biodiversity, and sustainable agriculture. Nevertheless, some of its potential as a medicinal herb, phytoremediation agent, and alternative energy have been reported. genetic variation of cogongrass has been studied in certain areas, however genetic variation in Java, Indonesia has not been reported. Therefore, this study aims to assess the genetic variation of cogongrass in Java, Indonesia using atpB-rbcLand trnL-F intergenic spacer (IGS). Twenty-one plant samples were collected randomly from nine different sites and two pairs of universal primers were employed to amplify the markers. The results showed a much lower genetic difference among subpopulations in comparison to genetic variation within individual subpopulations. This result indicates that the subpopulations have high connectivity, meaning the rapid change in terrestrial ecosystems on the island does not affect the cogongrass population.
... Marasmius palmivorus can be applied as bioherbicidal to pathogen fungi on the plant (Tamur et al., 2019). Moreover, Ranadive et al. (2013) reported that the extract from Marasmius species has antibacterial activity. ...
Article
Full-text available
Background: The record and research on macrofungi from Taman Eden 100, Toba-Samosir Regency, North Sumatra, Indonesia, was conducted to provide some information about their current status and potential use in the future. Methods: This research was divided into three steps: exploration, identification, and literature studies of the potential use from the identified macrofungi. Results: The research had successfully identified 14 macrofungi that were classified into 4 orders and 9 families. All the macrofungi found were Basidiomycota, namely Gymnopilus sp., Marasmiellus sp.1, Marasmiellus sp.2, Marasmius sp., Favolaschia sp., Coprinellus sp., Coprinopsis sp., Auricularia sp.1, Auricularia sp.2, Auricularia sp.3, Auricularia sp.4, Tylopilus sp., Suillus sp., and Russula sp. The identified macrofungi are potentially used as food supplements, medicine, bio-fertilisers, bioherbicides, and bioremediation agents based on the literature. Conclusions: Taman Eden 100 has a unique fungal diversity of macrofungi and has never been published in a scientific journal. Further investigations are needed to determine the fungal diversity and potential use of macrofungi in other places in Taman Eden 100.
Article
Full-text available
This article is the 17th in the Fungal Diversity Notes series which allows the researchers to publish fungal collections with updated reports of fungus-host and fungus-geography. Herein we report 97 taxa with four new genera distributed in three phyla (Ascomycota, Glomeromycota and Mucoromycota), 11 classes, 38 orders and 62 families collected from various regions worldwide. This collection is further classifed into taxa from 69 genera with four novel genera namely Jinshana, Lithophyllospora, Parapolyplosphaeria and Stegonsporiicola. Furthermore, 71 new species, 21 new records, one new combination and four novel phylogenetic placements are provided. The new species comprise Acrocalymma estuarinum, Aggregatorygma isidiatum, Alleppeysporonites elsikii, Amphibambusa aquatica, Apiospora hongheensis, Arthrobotrys tachengensis, Calonectria potisiana, Collariella hongheensis, Colletotrichum squamosae, Corynespora chengduensis, Diaporthe beijingensis, Dicellaesporites plicatus, Dicellaesporites verrucatus, Dictyoarthrinium endophyticum, Distoseptispora chiangraiensis, Dothiora eucalypti, Epicoccum indicum, Exesisporites chandrae, Fitzroyomyces pseudopandanicola, Fomitiporia exigua, Fomitiporia rondonii, Fulvifomes subthailandicus, Gigaspora siqueirae, Gymnopus ailaoensis, Hyalorbilia yunnanensis, Hygrocybe minimiholatra, H. mitsinjoensis, H. parviholatra, H. solis, H. vintsy, Helicogermslita kunmingensis, Jinshana tangtangiae, Kirschsteiniothelia dujuanhuensis, Lamproderma subcristatum, Leucoagaricus madagascarensis, Leucocoprinus mantadiaensis, Lithophyllospora australis, Marasmius qujingensis, Melomastia aquilariae, Monoporisporites jansoniusii, M. pattersonii, Monoporisporites valdiyae, Mucispora maesotensis, Mucor soli, Muyocopron yunnanensis, Nigrospora tomentosae, Ocellularia psorirregularis, Ophiocordyceps duyunensis, Oxneriaria nigrodisca, Oxydothis aquatica, O. fliforme, Phacidiella xishuangbannaensis, Phlebiopsis subgriseofuscescens, Pleurothecium takense, Pleurotus tuber-regium, Pseudochaetosphaeronema puerensis, Pseudodactylaria guttulate, Racheliella chinensis, Rhexoacrodictys fangensis, Roussoella neoaquatica, Rubroboletus pruinosus, Sanghuangporus subzonatus, Scytalidium assmuthi, Shrungabeeja kudremukhensis, Spirographa skorinae, Stanjehughesia bambusicola, Stegonsporiicola aurantiaca, Umbelopsis hingganensis, Vararia tenuata, Verruconis pakchongensis, Wongia bandungensis, and Zygosporium cymodoceae. The new combination is Parapolyplosphaeria thailandica (≡ Polyplosphaeria thailandica). The 21 new hosts, geographical and habitat records comprise Acrocalymma fci, Apiculospora spartii, Aspergillus subramanianii, Camposporium ramosum, Clonostachys rogersoniana, Colletotrichum brevisporum, C. plurivorum, Collybiopsis gibbosa, Dictyosporium tratense, Distoseptispora adscendens, Exosporium livistonae, Ganoderma gibbosum, Graphis mikuraensis, Gymnosporangium paraphysatum, Lasiodiplodia thailandica, Moesziomyces bullatus, Penicillium cremeogriseum, P. echinulonalgiovense, P. javanicum, P. lanosocoeruleum, P. polonicum, and Pleurotus tuber-regium. Graphis chlorotica, G. panhalensis and G. parilis are given as novel phylogenetic placements. In addition, we provide the morphology of Tarzetta tibetensis which was missing in the previous Fungal Diversity Notes 1611–1716. Identifcation of characterization of all these taxa are supported by morphological and multigene phylogenetic analyses.
Article
Full-text available
Marasmius palmivorus is a marasmioid fungal species that exhibits parasitic behaviour, although most marasmioids are rarely parasitic. The fungus has been reported to cause fruit bunch rot disease of oil palm and coconut, but only a few studies on its pathogenic behaviour are available, particularly on oil palm. Hence, there is a need to assess the ability of the fungus to act as a pathogen and to study its molecular evolution and taxonomy. Nine isolates of M. palmivorus were successfully isolated from basidiocarps and diseased fruitlets of oil palm collected from oil palm plantations and were morphologically characterized on potato dextrose agar (PDA) followed by molecular identification based on nucleotide sequence alignments of internal transcribed spacer (ITS) regions of ribosomal RNA (rRNA) gene clusters with sequences from GenBank. Koch's Postulates confirmed that M. palmivorus could infect oil palm fruitlets with symptoms similar to those observed for bunch rot disease. Molecular phylogenetic studies using nucleotide sequences of ITS and the nuclear ribosomal large subunit (nLSU) showed that isolates sharing the same phenotypic characteristics of Marasmius palmivorus and Marasmiellus palmivorus are monophyletic and share a common ancestor. The fungus has also been shown to be more closely related to the genus Marasmius than Marasmiellus; therefore, we support retention of the taxon name of the pathogen causing bunch rot disease of oil palm as Marasmius palmivorus.
Article
Full-text available
We present the latest version of the Molecular Evolutionary Genetics Analysis (MEGA) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, MEGA has been optimized for use on 64-bit computing systems for analyzing bigger datasets. Researchers can now explore and analyze tens of thousands of sequences in MEGA. The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit MEGA is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OSX. The command line MEGA is available as native applications for Windows, Linux, and Mac OSX. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.
Article
Full-text available
ABSTRACT Background: Reed plants are widely distributed in Iraq and responsible to invade irrigation channels and drainage systems. Aim: The present study was designed to identify and characterize the causal agent of reed wilt disease. Methods: Disease symptoms, characteristics and growth pattern of causal agent were investigated. Results: Reed wilt disease has been observed during the survey which was held at the end of October 2016. The percent of natural infection of this disease was found in the range of 7-18%, the causal agent was identified as Marasmiellus palmivorus based on macro and microscopic characteristics. Microscopic observation of M. palmivorus revealed the engendered white cottony mycelia turned to creamy with clamp connection. Radial growth of this fungus was greatly varied according to the type of additives supplemented in the growth media and results were as following: M. oleifera (7.8 cm) > wheat (7.7cm) > Reed (7.4 cm) > millet (6.8 cm) > Caladium (6.7 cm) > PDA (5.86 cm) > onion (2.94 cm). Conclusion: The results of present study concluded that M. palmivorus was recorded as the causal agent of wilt disease on reed plant for the first time in Iraq and possibly for other countries as far as we know. Also, this fungus could be act as bio-herbicidal against reed plants, but more attention should be paid to this point. Keywords: Marasmiellus palmivorus, reed plant, wilt disease
Article
Full-text available
Microorganisms need nutrients for their biological activities and reproduction. Culture media such, used for growing fungi in laboratories. Because of high cost and don't available at all time the present study was conducted to supersede Potato in PDA medium with powdered leaves of either Moringa oleifera or mint and to examine their effect on mycelial, conidial and biomass production of bioagent fungus Trichoderma harzianum and pathogenic fungi: Fusarium graminearum and F. oxysporum. The patterns of T. harzainum growth was substantially affected by Moringa Dextrose Agar (MoDA) and Mint Dextrose Agar (MiDA). Both the media were found to magnify the mycelial growth of bioagent fungus as compared to pathogenic fungus F. oxysporum. MoDA characterized by enhancing spore production in T. harzainum(19.6×10 8),in comparison to Fusarium graminearum (7.13×10 8) and F. oxysporum (8.73×10 8) after 9 days of inoculation. Dry weights of T. harzainum (0.75 mg) and F. oxysporum (0.35 mg) mycelia were also sharply incremented in MoDB compared to PDB (0.2 and 0.15gm) respectively in which the dry weight not inhibited by modified media. It was concluded that the utilization of M. oleifera or Mint leaves as a component of culture media in laboratories is a feasible and cheap source as compared to commercially prepared PDA. Furthermore, the present formulated media could be subsidiary act as a selective medium for the magnification and sporulation of T. harzianum. In integration, the leaf powders of both sources can be stored for longer time periods in comparison to potato.
Article
Full-text available
Thirty-one species of gymnopoid fungi are reported from the African island nation, Republic of São Tomé and Príncipe. Ten represent new species (Arrhenia cystidiata, Callistosporium elegans, Campanella burkei, Gymnopus billbowesii, G. hirtelloides, G. irresolutus, G. mustachius, G. ocellus, G. pleurocystidiatus, G. rodhallii), four are new nomenclatural combinations (G. cervinus, G. hirtellus, G. ugandensis, Tricholomopsis aurea), and all 21 previously described species represent new distribution records. Comprehensive descriptions, line drawings, colour photographs, comparisons with allied taxa, a dichotomous key to aid identification, and a phylogenetic analysis of members of the Omphalotaceae based on ITS rDNA sequence data are provided.
Article
Full-text available
The vascular wilt pathogen, Fusarium oxysporum f. sp. lycopersici (Fol) is one of the most devastating pathogens for tomato crop. The aim of this study was to evaluate the expression of resistance genes in tomato plants treated by chemical and bio-agents factors before inoculation with Fol inoculum. Methods :.The tomato plants revealing Fusarium crown and root rot symptoms, was collected and brought into laboratory, washed separately using tap water. Leaves and roots samples were macerated using liquid nitrogen, 250mg were taken for DNA extraction and for further Quantitative Real-Time PCR experiments. Results : The genes LECHI3, LECHI9, and LEGLUCA were highly significant expressed in roots rather than in leaves after the treatment of plants with Salicylic acid +Fol, CaCl 2 , CaCl 2 +Fol. However the gene LEGLUCB was showed increasing in expression rate in leaves rather than in roots after the treatments with Trichoderma harzianum+Fol, and CaCl 2. Tomato plants grown in infected soil (A) supplemented with sterilized extract of tomato debrisM0revealed no expression in the genes in both roots and leaves. Conclusion : It appears that the defense genes of tomato plants against Fol are stimulated by chemical inducers and bio-control agents and that will be helpful to identify pathogenicity mechanism involved in the tomato wilt disease development. Our findings could lead to the improvement in disease control strategies.
Article
Full-text available
Background Trichophyton rubrum is a causative agent of dermatophytosis, affecting hairs, skin and nails of humans worldwide. This has driven the search for more safe antimicrobial agents against this fungus. Aim The aim of this study was to investigate the antifungal activity of anise essential oil against growth and morphological characteristics of this fungus. Methods The study included of determination of MIC, analysis of the essential oil's effects on mycelial growth, sporulation, germination of fungal spores, micromorphology and keratinase activity of T. rubrum. Results The results upon screening, the oil inhibited both strains, with zones of growth inhibition for first strain were 21, 30 and 39 mm at 15.6, 31.2 and 62.5 µl/ml respectively, while in second strain were 24, 32 and 39 mm at 15.6, 31.2 and 62.5 µl/ml respectively. The MIC of anise oil was 15.16 µg/mL for both strain. Anise essential oil effects on growth, since the inhibition percentage of radial growth was increased from 56% at 3 rd day to 86% at the 7 th day. Sporulation was substantially decreased by anise oil treatment. Anise oil was significantly inhibited conidial germination for both strains. There were morphological changes in the conidial group where the conidia were absent in treated sample. Protease inhibitor isolated from mature leaves of Moringao leifera showed great ability to inhibit keratinase activity of T. rubrum. Conclusion It is concluded that anise essential oil constitutes a potential antifungal product against T. rubrum.
Article
Three distinct lineages of gymnopoid and marasmioid fungi are recognized in parsimony and Bayesian analyses of nLSU rDNA sequences. One lineage contains the genera Lentinula, Rhodocollybia, Tetrapyrgos, a resurrected and redefined Mycetinis, and two unresolved clades designated /marasmiellus and /gymnopus. /marasmiellus includes the type species of Marasmiellus and is dominated by members of Gymnopus sect. Vestipedes. /gymnopus includes the type species of Gymnopus, Micromphale and Setulipes, and members of Gymnopus sect. Levipedes. A second lineage includes the genera Marasmius s.s. and Crinipellis and represents a redefined /marasmiaceae. A third lineage includes the genera Cylindrobasidium, Flammulina, Gloiocephala, Physalacria, Strobilurus, Xerula and Marasmius sect. Epiphylli and represents /physalacriaceae. One new combination in Rhodocollybia and four new combinations in Mycetinis are proposed. A discussion of the taxonomic implications resulting from the phylogenetic reconstruction is presented.