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*Correspondence: jka.uobsci.iq@gmail.com; +964783193359
(Received: 28 June 2019; accepted: 04 September 2019)
Hassan A. Tamur, Haider Jawad Al-Janabi, Jawad K. Abood Al-Janabi, Liqaa Y. Mohsin, Zahraa A.N. Al-Yassiry,
Characterizaon and Antagonisc Acvity of New Causal Agent of Wilt Disease in Imperata cylindrica (Marasmius palmivorus),
J Pure Appl Microbiol., 2019; 13(3): 1525-1536. hps://doi.org/10.22207/JPAM.13.3.24
© The Author(s) 2019. Open Access. This arcle is distributed under the terms of the Creave Commons Aribuon 4.0 Internaonal License which
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Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019
Arcle 5684 | hps://doi.org/10.22207/JPAM.13.3.24
Print ISSN: 0973-7510; E-ISSN: 2581-690X
RESEARCH ARTICLE OPEN ACCESS
www.microbiologyjournal.org1525Journal of Pure and Applied Microbiology
Imperata cylindrica
(Marasmius palmivorus)
Hassan A. Tamur122,
Liqaa Y. Mohsin33
1Genec Engineering Department, Biotechniques College, Green University of Al Qasim, Iraq. 2Al-Mustaqbal
University College, Iraq. 3Department of Biology, College of Science, University of Babylon, Iraq.
Imperata cylindrical
Marasmius palmivorus
ITS
M. palmivorus
M. palmivorus On the
M. palmivorusFusarium
solani and F. thapsinum, Penicillium sp., T. harzianum, and P. cyclopium
M. palmivorus,
Marasmius palmivorus, Phylogenec structure, Antagonism.
www.microbiologyjournal.org1526
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Journal of Pure and Applied Microbiology
Marasmius is a genus of mushroom-
forming fungi in the family Marasmiaceae, order:
Agaricales, class: Agaricomycetes, division:
Basidiomycota1. In 2005, Kirk2 listed 955 species
belonging to Marasmius in the Index Fungorum.
There has been recent aenon in understanding
worldwide biodiversity and the evolution of
Marasmius3-7.
Marasmius palmivorus is most
phonecally like to a complex of the Marasmiellus
species, which is reportedly pathogenic in a range
of economically important monocots, including
bananas, oil palms, sugar cane, corn, maize, taro
(Colocasia esculenta), turf grass, cocoa, and reed
plants8-14. Marasmius is not closely related to the
species Marasmiellus, as it is best to use its present
taxon – where it was originally described15, and
unl more data from mulple genes and a large
Marasmiaceae dataset provide the informaon to
clarify its taxonomic posion16.
Members of the genus Marasmius are
saprotrophic fungi, oen in forests, that play a
key role in the breakdown of wood and leaf lier,
nutrient cycling, and soil genesis; this is where
they serve an important ecological role in the
biodegradaon of lignocellulosic material17. Fiy
cultures, invesgated for enzyme acvies and
anmicrobial and anoxidant properes, indicate
that the Marasmius species may have potenal
applicaons in biotechnology17.
Based on our knowledge, there is no
scienc report available to characterize Imperata
cylindrical wilt disease, caused by the Marasmiys
genus. Therefore, the current study was carried
out to determine the molecular sequence of the
causave agent of this disease by sequencing the
ITS-5.8s-ITS2 region of rDNA and invesgang the
antagonisc potenal of this agent against fungal
pathogens; however, this is poorly documented,
and may be used to develop new biocontrol
agents.
Fusarium solani, F. thapsinum, Penicillium
sp., T. harzianum and Penicillium cyclopium are
procured from the Advanced Mycology Unit,
Biology Department, College of Science, University
of Babylon.
Disease samples from stems and rhizomes
of I. cylindrical are grown close to the reed plant
or in agricultural elds, and were collected from
20 agricultural elds in Babylon Province, Iraq,
in November, 2017. Samples were transferred to
the laboratory, with inoculaon and incubaon
conducted as described14. Identification of
fungal isolates were based on morphological and
microscopic features, such as characteriscs of
colony and mycelium clamp connecons, using
40X Microscopic Objecve Lens18,19.
Due to the similarity among all isolates of
Imperata Cylindrical Wilt Disease Fungus (IcWDF),
only one isolate was chosen for the following
experiments. The microbial cultures include IcWDF
isolate, Fusarium solani, F. thapsinum, Penicillium
sp., T. harzianum, and Penicillium cyclopium, which
were separately inoculated in petri dishes with
potato dextrose agar (PDA) (pH 7.0), followed
by incubaon for 5 days at 26 ± 2oC. To make the
slants, 20 ml of PDA was poured into glass tubes
and left until solidified. Fungal isolates were
maintained at 50C in a refrigerator, followed by
subculturing at regular intervals (every 30 days)20.
The inoculum of IcWDF was prepared
with 250 ml of millet seeds (Panicum miliaceum
L.) in conical asks, according to the procedure
described by Dewan and Sivasithamparam (1989)21
and others14,22.
Twenty uniform I. cylindrical plants at
similar age were selected from vegetable elds
and from the channels of irrigaon and planted
as described by Tamur et al.14. I. cylindrical plants
were grown for 2 months under glasshouse
condions (25±5 oC). The pots were then inoculated
individually with a causal agent, by mixing the
previously prepared inoculum in the pot soil at
a rate of 5% each. Ten pots without inoculaon
served as controls. The symptoms of disease were
reported at 15 days aer inoculaon14.
The fungal isolate from IcWDF was
recultured on PDA, as previously menoned, and
incubated at 28 ± 2oC for 3 days. The fungus cells
were collected and then transported to a new
sterilized tube for DNA extraction, which was
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Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
achieved with a special puricaon kit (Genomic
DNA purification kit, Zymogene, Orlando, FL,
USA), and used according to the manufacturer’s
protocol.
Detecon of ITS gene was conducted by
using primers for amplicaon. A fragment 565 bp
of ITS was amplied using a forward primer (ITS1
F: 5' - TCCGTAGGTGAACCTGCGG -3') and a reverse
primer (ITS4 R:5' TCCTCCGCTTATTGATATGC-3')
(Primer set supplied by IDT (Integrated DNA
Technologies, Coralville, IA, USA). The PCR
amplicaon was performed in a volume of 25µl,
containing 1.5µl DNA, 5 µl Taq PCR Pre Mix (Intron
Biotechnology, Seoul, S. Korea), 1 µl of each primer
(10 pmol), at which point dislled water was added
into a tube for a total volume of 25 µl. The thermal
cycling condions were as follows: denaturaon at
94°C for 3 min, followed by 35 cycles of 94°C for
45 s, 52°C for 1 min, and 72°C for 1 min, with nal
incubaon at 72°C for 7 min, using a thermal cycler
(Gene Amp, PCR system 9700; Applied Biosystem,
Waltham, MA, USA). The PCR products were
separated by 1.5% agarose gel electrophoresis and
visualized by exposure to ultraviolet light (302 nm)
aer red staining (Intron, Seoul, S. Korea).
Gene sequencing was done at the
Naonal Instrumentaon Center for Environmental
Management (nicem) online (hp://nicem.snu.
ac.kr/main/?en_skin=index.html), biotechnology
lab, with a DNA sequencer 3730XL, Applied
Biosystems, Waltham, MA, USA). A homology
search was conducted using a Basic Local Alignment
Search Tool (BLAST) program, available at the
National Center of Biotechnology Information
(NCBI) online at (hp:// www.ncbi.nlm.nih.gov)
and the BioEdit program. Aer morphological and
molecular idencaon, these experiments were
carried out:
Marasmius palmivorus Temperature
The growth of M. palmivorus was
measured at various temperatures (15, 20, 25,
and 30oC). 20 ml PDA were added to sterile petri
dishs, each plate, was inoculated by taking 0.5 cm
from the edge of colonies. Plates were separated
into 5 groups before incubation for 3 days (4
replicates each). Radial growth of this fungus (from
two intersecng lines in the center of the dish.)
was daily esmated on an Petri plate unl full
expansion of growth, with dierent temperature
treatments clearly determined.
pH
Dierent ranges of pH (4.5, 5.5, 6.5, 7.5,
and 8.5) were established for the growth of M.
palmivorus, using a sterilized petri-dishes (20 ml
of PDA each). The inoculation, the incubation
process, and the fungal growth measurement were
achieved as described in the previous paragraph
(for temperature).
Marasmius palmivoru
nutrient sources
Dierent nutrient sources were prepared
by collecng leaves of wheat, I. cylindrical, and
reed (youngest expanded). Leaf samples were
dried in the shade, as well as in an oven (60÷C) for
48 h, and grinded into ne powder by an electronic
blender14. All leaf powders were stored in sterilized
containers unl usage23.
Preparaon of media was achieved by
dissolving 2 g of each nutrient source, in 100
ml of dislled water with or without dextrose
using a magnec srrer. Supplementaon with
dextrose and agar growth medium were carried
out at the same rate as for PDA, then mixed gently
and autoclaved at 15 psi for 15 min, with PDA
as a control treatment. Autoclaved media were
poured into petri plates for each type, with the
plates inoculated aer solidicaon with fungal
ssue (0.5 cm) taken from the edge of an M.
palmivorus colony (4 days old). Three replicates of
each source were taken and incubated for 6 days
at 28 ± 20C24. Radial growth was regularly recorded
as menoned before.
Marasmius palmivorus:
The antagonistic activity of M .
palmivorus isolate was screened for the growth
of pathogenic and nonpathogenic fungi, including
Fusarium solani, F. thapsinum, Penicillium sp., T.
harzianum, and Penicillium cyclopium by using the
dual culture technique25. Five mm discs of tested
fungus were placed individually in the center of
each PDA plate half, whereas the other half was
inoculated with IcWDF followed by incubaon
at 26 ± 2°C, in a controlled experiment, with
each fungus grown on PDA. Growth inhibitory
antagonisc acvity of the tested fungus against
phytopathogenic fungi was assessed in terms of
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Journal of Pure and Applied Microbiology
percent inhibion in cm by using this formula26:
Inhibion % = (r1-r2/r1) ×100,
where, r1 is the diameter of
phytopathogenic fungal growth without IcWDF,
while r2 is represents the radial growth of the
pathogenic fungus with IcWDF. Furthermore, all
treatments were carried out in three replicates.
The current work were arranged in a
randomized complete block design. Data were
assessed by analysis of variance. The level of
significance was determined by Fisher’s least
signicant dierence (LSD) comparisons at the 5%
probability level.
Marasmius palmivorus
Infecon of I. cylindrical by IcWDF fungus
was appeared as wilt symptoms on stems and
rhizomes, which produced blight symptoms on the
leaves. Symptoms primarily iniated on the base
of the stem’s lower secon as brown to black rot
lesions. Mycelium which was grown rapidly show
u as white coony growth around the plant base
(Fig. 1A).
IcWDF isolate was tentavely idened
as M. palmivorus, according to colony features.
Microscopic observaon revealed that this fungus
produced wilt colonies on petri dishes and covered
the plate within 3 to 4 days at 28 ± 2oC, with
hairy-branched and hyaline mycelium (Fig. 1B).
Colonies were creamy aer 10 days of inoculaon.
Septaon is recognized in the fungal mycelium (Fig.
1C), with clamp connecons clearly disnguished
(Fig. 1D). Spores, and reproductive aspects
were not observed under the light microscope
examinaon, with a temperature range of 28 ± 2oC.
The macroscopic fruing body of M. palmivorus
was not detected under lab condions.
The signs and symptoms of M. palmivorus
were conrmed according to Koch’s postulates.
Dierent symptoms of I. cylindrical wilt disease
were recorded aer 2 weeks and found to be
similar to symptoms observed during natural
Disease symptoms of wilt disease caused by M. palmivorus on I. cylindrical plants at 15 days aer inoculaon
(A), morphological feature of M. palmivorus growing on PDA at 28 ± 2oC aer 4 days of incubaon (B), septal wall
of fungal hyphae (C), and clamp connecons (D), under a light compound microscope, 25 µm (40X-1 at 10 days
aer incubaon)
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Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Phylogenec tree, depicng the relaonship of M. palmivorus
infection. In controlled experimentation, no
disease symptoms appeared. Death of I. cylindrical
plants tended to occur aer 3 weeks, while the
infecon process increased in moist circumstances.
In this study, the conrmaon process
of one isolate, M. palmivorus, was conducted by
convenonal PCR technique to detect the presence
of a specic gene, with sequence analysis of the
ITS1-5.8s-ITS2 region, and BLAST analysis from
the NCBI database. Aer sequencing, this isolate
was idened. The extracted genomic DNA of
these isolates was used as a template spacer
(ITS). The PCR amplicaon products show that
M. palmivorus yielded about 565 pb. The product
is shown in Fig. 2.
PCR product, the band size of 565 bp. The product was electrophoresis on 1.5% agarose at 5 volt/cm2. Also,
1x TBE buer for 1.5 h, DNA ladder (100), lane (1 to 2) PCR product of band size 565 bp, visualized under UV light
Phylogenec analysis by rDNA sequencing
found a genec variaon among isolates from M.
palmivorus in other countries. BLAST results were
explored by searching with partial nucleotide
sequences at the gene bank database (Table 1).
A phylogenec isolate tree in Iraq showed
a close relaonship with M. palmivorus in India,
idened at 99% (4 KC771224.1), in the Philippines
at 98% (4 KR05 6289.1), and in Kenya at 98% (9
KT27 3356.1). M. palmivorus in Malaysia was
idened at 98% (7 JQ65 3440.1), with a distant
relaonship to M. palmivorus (MG717877) in Iraq
(Fig. 3 and Table 1).
Marasmius palmivorus
Temperature
The results of this study revealed a
substanal eect of temperature (Fig. 4) for the
growth of M. palmivorus. The opmum growth
occurred at 30°C after a 3-day incubation,
followed by 25°C, then 20°C, while the lowest
growth occurred at 15oC. The rising or lessening
temperatures below 15°C, or higher than 30°C,
caused obstrucon of M. palmivorus growth.
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Journal of Pure and Applied Microbiology
Eect of dierent temperatures: 15oC (A), 20oC (B), 25oC (C), and 30oC (D) in the growth diameter of M.
palmivorus on PDA aer 3 days of incubaon (LSD(0.05)=0.263)
pH
As a constant, pH (4.5, 5.5, 6.5, 7.5, and
8.5) has a signicant eect on the growth of M.
palmivorus with PDA, at temperatures 28 ± 2˚C.
Maximum growth of M. palmivorus was obtained
at pH 7.5 (8 cm), followed by pH 6.5 (6.3 cm), with
the radial growth of this fungus increasing at pH
5.5 (6 cm), which was less than pH 7.5 and 6.5, and
higher than pH 8.5 (5 cm). Growth of this fungus
decreased to 4.5 cm at pH 4.5 at the end of the
incubaon (Figs. 5A and 5B).
Marasmius palmivorus
nutrient sources
Growth of M. palmivorus varied
considerably, according to the composition of
growth media, which was most profound with
wheat and reed leaves, supplemented with
powdered material in the medium (Fig. 6).
Therefore, the growth diameter of M. palmivorus
was dramacally aected by the source of the
added nutrient. Aer 4 days of incubaon, the
growth of the tested fungus signicantly diered in
Eect of dierent pH levels (4.5, 5.5, 6.5, 7.5, and 8.5 on colony growth of M. palmivorus aer 4 days of
incubaon)
Homology sequence idened for local Marasmius palmivorus isolate
Accession Gene country Source Compability
ID: MG251431.1 18S ribosomal RNA India Marasmius palmivorus 99%
ID: MF100969.1 18S ribosomal RNA USA Marasmius palmivorus 98%
ID: KR056289.1 18S ribosomal RNA Philippines Marasmius palmivorus 98%
ID: KJ865843.1 18S ribosomal RNA India Marasmius palmivorus 98%
ID: JQ653445.1 18S ribosomal RNA Malaysia Marasmius palmivorus 98%
ID: JQ653435.1 18S ribosomal RNA Malaysia Marasmius palmivorus 98%
ID: MF100965.1 18S ribosomal RNA USA\ California Marasmius palmivorus 98%
ID: KT273356.1 18S ribosomal RNA Kenya Marasmius palmivorus 98%
ID: KR056290.1 18S ribosomal RNA Philippines Marasmius palmivorus 98%
ID: JQ653446.1 18S ribosomal RNA Malaysia Marasmius palmivorus 98%
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Journal of Pure and Applied Microbiology
Eect of dierent pH levels (4.5, 5.5, 6.5, 7.5, and 8.5) on growth diameter of M. palmivorus aer 4 days
of incubaon (LSD(0.05)=0.377)
Colony growth of M. palmivorus on culture
media from powdered leaves of the following plants
with dextrose (1) and without dextrose (2): A (wheat),
B (reed), C (I. cylindrica), and D (PDA) aer 4 days of
incubaon at 30oC
wheat (6.8), reed (9), caladium (8.5) supplemented
with dextrose, compared to PDA. In contrast, the
average growth reached 5.5, 8.3, and 7.1 in wheat,
reed, and caladium, respecvely, which were not
supplemented with dextrose (compared to PDA).
Thus, proporonal fungal growth was increased in
all formulated media with and without dextrose,
except in the wheat treatment, which was not
supplemented with dextrose (Fig. 7).
Substantial antagonistic effect of M.
palmivorus was appeared against F. solani and
F. thapsinum, in the range of 70-100% at 6 to 8
days aer incubaon, respecvely. The growth
inhibitory percentages of RBDF isolate were 33%
(Penicillium sp.), 14-62% (T. harzianum), and 20-
Growth diameter of M. palmivorus on culture media of powdered leaves of the following plants with dextrose
(1) and without dextrose (2): A (Wheat), B (Reed), C (I. cylindrica), and D (PDA) aer 4 days of incubaon at 30oC.
(LSD(0.05)=0.631)
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Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
50% (P. cyclopium) within the 6th – 8th days aer
incubaon, respecvely. The most remarkable
antagonism was observed with T. harzianum, in
which Marasmiellus sp. started to grow over the
already-grown ssues of T. harzianum. Another
excing results about antagonism were occurred
between Penicillium sp. and M. palmivorus, where
in spite of the fast growth of the Penicillium sp.
covering nearly 70% of the petri area, the fungal
mycelia of M. palmivorus rapidly approached
Penicillium sp.; this then directly inhibited its
growth upon contact (Figs. 8 & 9).
Antagonisc eciency of M. palmivorus towaed: F. solani (A1), F. solani + M. palmivorus- front face (A2), F.
solani + M. palmivorus- reverse face (A3), F. thapsinum- alone (B1), F. thapsinum + M. palmivorus- upper face (B2),
F. thapsinum + M. palmivorus- lower face (B3), Penicillium sp. alone (C1), Penicillium sp. + M. palmivorus- front face
(C2), Penicillium sp + M. palmivorus - reverse face (C3), T. harzianum (D1), T. harzianum. + M. palmivorus-4 d.a.i.
(D2), T. harzianum + M. palmivorus- 8 d.a.i. (D3), Penicillium cyclopium (E1), Penicillium cyclopium. + M. palmivorus-
fron face (E2), Penicillium cyclopium + M. palmivorus- reverse face (E3), Control, M. palmivorus (F) at 28 ± 2oC
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Journal of Pure and Applied Microbiology
Imperata cylindrical plants are known
to invade agriculture elds and irrigaon channel
systems in the majority of agriculture lands in
Iraq. In the present study, the observaons of
disease symptoms and the distribuon of disease
demonstrated that the rate of wilt disease on I.
cylindrical by M. palmivorus varied according to
agricultural region, weed intensity, and type of soil.
Based on colony characteristics, like
the appearance of clamp connecons in fungal
tissues (mycelium), this fungus was identified
as Marasmius palmivorus. This nding is closely
harmonious with the observaons presented by
Singer (1973)8.
The generic situaon of M. palmivorus
is quesonable, since it’s morphology is quite
similar to that in Marasmiellus than to Marasmius
sensu stricto19. The original was published as M.
palmivorus by Corner (1996)27. In 2005, Wilson and
Desjardin7 formally proposed including this taxon
as Marasmiellus palmivorus, but the proposal
was not accepted, and there is no taxon available
as Marasmiellus palmivorus. Some workers read
the formal proposal of Wilson and Desjardin, but
wrongly named their collected taxon Marasmiellus
palmivorus; they published some of this work as
well16.
The transformave history was deduced
by ulizing the Neighbor-Joining method (NJ)28.
The ideal tree with the enrety branch length
= 0.01559401 is appeared. The tree is drawn to
scale, with branch lengths in the similar units
as the evoluonary distances used to conclude
the phylogenec tree. These separaons were
processed with the most extreme Composite
Likelihood Method29, and are in units of the
number of base substitutions per site. The
invesgaon included 21 nucleode sequences.
Codon positions included were
1st+2nd+3rd+Noncoding. All posions containing
gaps and missing data were eliminated. There
were a enre of 325 locaons in the nal dataset.
Evoluonary analyses were conducted in MEGA730.
The mulple sequence alignment analysis
of paral 18S ribosomal RNA gene sequence for
local M. palmivorus isolate and the NCBI gene
bank, using Mega 7, was a mulple alignment
analysis tool. Sequence comparisons of the ITS
region are broadly utilized in taxonomy and
molecular phylogeny, as it is direct to enhance
from lile amounts of DNA (due to the high copy
number of rRNA genes), including that there is
a high level of variaons between rmly related
species
It has been demonstrated that paral
18S ITS1 5.8S ITS2, and paral 28S ribosomal RNA
gene sequence data on an individual strain with
the nearest neighbor, and exhibing a similarity
score of < 97%, represents a new species; however,
the meaning of similarity scores > 97% is not
as clear. The rst step of alignment analysis for
all sequences in this study with other selected
references used the (Clustal W) program step in
MEGA 6.0. This program demonstrated an accurate
degree of identity with all world sequences,
including those in this study. The results with
Inhibion percentage in A (F. solani), B (F. thapsinum), C (Penicillium sp.), D (T. harzianum) and E (Penicillium
cyclopium) grown in PDA aer 6 and 8 days of incubaon during the antagonism with Marasmius palmivorus
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Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
(Clustal W) are important, because they were
directly used in the phylogenec tree construcon,
and agreed with previous studies using specic
primers, The rmly related taxa possess similar
fragment distribuons, while the remotely related
taxa are increasingly dissimilar, thus providing
impressive phylogenec data 31.
The mulple alignment analysis showed
similarity and dierences in 18S ribosomal RNA
gene nucleotide sequences. This corresponds
to the study by Tom ovsk et al.32, in which it
was revealed that all Trametes species form a
single clade. The ITS region showed the highest
fungi ecology33 and was recommended to be the
universal fungal barcode sequence34.
A nucleode was used with a maximum
likelihood of detecng the relaonship of world
and local sequences, which was the preferred
method of nucleode sequences in MEGA 6.0: it
uses the NJ method, a simplied version of the
Minimum Evoluon (ME) method. The NJ method
produces an unrooted tree, as it does not require
a constant rate of evolution. Finding the root
requires an out-group taxon28. Further studies
with dierent gene sequences will resolve this in
the phylogenec analysis of fungi35.
Dua and Acharya (2018) reported that
nrITS and nrLSU sequences of M. palmivorus
were 760 and 593 bp, respecvely, which were
deposited in the GenBank database with accession
numbers MG251431 (for nrITS) and MG251441
(for nrLSU). Based on BLAST searches in the NCBI
database, they had the most similarity to the taxon
from Malaysia [GenBank JQ653433; identities
= 717/726(99%), gaps = 3/726(0%)], Hawaii
[GenBank AY639434; idenes = 592/593(99%),
and gaps = 0/593(0%)]16.
Marasmius palmivorus
Culture media is viewed as one of the
fundamental necessies for the development and
improvement of fungi. M. palmivorus was found
to grow a lot quicker in supplemented growth
medium of powdered leaves, comprising of wheat,
reed, and caladium, compared with PDA; this
suggests that there are preferable growth sources
with the possibility to substute the ulizaon of
PDA for culturing M. palmivorus.
The alteraon in growth paerns was
studied by Thiruchchelvan et al.36
, which observed
that at 4 days’ incubaon of fungus on PDA, King
yam and Elephant foot yam media were more
preferable for fungal growth than that in lter
paper, sago nutrient agar, and water agar. Another
study acheived by Ravimannan et al.37 showed
the ulity of legume seeds (cowpea, green gram,
black gram, and soya meat) for the growth of
Trichoderma, Scleroum, Fusarium, Aspergillus,
and Penicillium sp.
The antagonisc eect of Basidiomycetes
mushroom on the growth of plant pathogenic
fungi can be used as a promising biocontrol
system. The results of this study show the
broad spectrum of antagonistic activity of M.
palmivorus to pathogenic fungi, such as F. solany,
F. thapsinum, P. cyclopium, and T. harzianum. M.
palmivorus surprisingly colonizes the anbioc
eect of T. harzianum, which indicates overgrowth
of M. palmivorus or production of antifungal
substance(s) against the tested fungi.
However, the growth of M. palmivorus
was found to be suppressed by Penicillium sp., as
they reached the vicinity of the other. This might
be due to the producon of toxic substance(s)
by Penicillium sp., which undermine the growth
of M palmivorus. In the present scenario, one
interesng aspect to be invesgated is the possible
mechanisc insight behind the biocontrol acvies
of such a fungus. One potenal mechanism of
antagonism behavior of M. palmivorus can be
associated with nutrients and niche compeon.
In addion, the anbiosis eect of M. palmivorus
against soil-borne fungi, as well as weed plants,
may also be associated with the producon of
volale and nonvolale compounds. Previously,
it was documented that the antagonisc eect
of a living cell might be due to the release of
extracellular bioacve molecules.
The present results disagree with
those of Thiruchchelvan et al.36, in which they
report that Trichoderma sp. causes growth
inhibion of Marasmiellus sp. up to 92% under
in vitro conditions. The antifungal activity of
T. harzianum to fungal pathogens have been
reported: Aspergillus niger, A. avus, Phytophthora
sp., Fusarium oxysporum, Rhizoctonia solani,
Penicillium notatum, and Alternaria solani38.
To the best of our informaon, this is
the rst record of the presence of M. palmivorus
www.microbiologyjournal.org1535
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Journal of Pure and Applied Microbiology
in Iraq, and likely around the world for weeds.
Using M. palmivorus as a biocontrol agent against
I. cylindrical plants is a new approach. The earliest
experimental studies also show the selective
acon of M. palmivorus against weeds, without
causing any deterioraons to neighboring plant
seedlings. However, further studies are required
to explore its selecve herbicidal acvity in the
near future.
Authors would like to thank the Ministry of Science
and Technology - Babylon Secon - for providing
formal facilies to Mr. Tamur, and the Department
of Biology, University of Babylon, for technical
assistance. Authors are also thankful to Prof. Ali
H. K. El-Bahadili for scienc advice.
CONFLICT OF INTEREST
The authors declares that there is no
conict of interest.
All authors listed have made a substanal,
direct and intellectual contribuon to the work,
and approved it for publicaon.
This work was nancially supported by
the Department of Biology, College of Science,
University of Babylon, Iraq.
All datasets generated or analyzed during
this study are included in the manuscript.
ETHICS STATEMENT
This arcle does not contain any studies
with human parcipants or animals performed by
any of the authors.
REFERENCES
1. Tan Y-S, Desjardin DE, Vikineswary S, Noorlidah A.
Basidiomycota: The genus Marasmius in Peninsular
Malaysia. In: Malaysian Fungal Diversity (eds. E.B.G.
Jones, K.D. Hyde and S. Vikineswary). Xxxx, Malaysia,
2007, 61-73.
2. Kirk PM. Species Fungorum (version 18th May 2015).
In: Species 2000 & ITIS Catalogue of Life. 2015.
Retrieved 2015-06-17.
3. Antonםn V. Supplements to the monograph of
tropical African species of Marasmius (Basidiomycota,
Marasmiaceae). Cryptogamie Mycol. 2013; (2): 113–
135. hps://doi.org/10.7872/crym.v34.iss2.2013.113.
4. Antonםn V, Noordeloos ME. A monograph of
marasmioid and collybioid fungi in Europe. Eching,
IHW Verlag. 2010; .
5. Wannathes N, Desjardin DE, Hyde KD, Perry BA,
Lumyong S. Fungal Div. 2009; 37: 209–306.
6. Desjardin DE, Ovrebo CL. New species and new records
of Marasmius from Panama. Fungal Div. 2006; 21: 19-
39.
7. Wilson AW, Desjardin DE. Phylogenec relaonships in
the gymnopoid and marasmioid fungi (Basidiomycetes,
euagarics clade). Mycol. 2005; (3): 667–679. hps://
doi.org/10.1080/15572536.2006.11832797
8. Singer, R. The genera Marasmiellus, Crepidotus and
Simocybe in the neotropics. Beih. Nova Hedwigia.
1973; : 1–517.
9. Miller GL, Desjardin DE, Tredway LP. First Report of
Marasmiellus mesosporus causing Marasmiellus Blight
on Seashore Paspalum. Plant Dis. 2010; (11): 1374.
hps://doi.org/10.1094/PDIS-06-10-0424
10. Almaliky BSA, Mior Ahmad MA, Kadir J, Mui W.
Pathogenicity of Marasmiellus palmivorus (Sharples)
Desjardin comb. Prov. on Oil Palm Elaeis guineensis.
Wulfenia 2012; (8): 144-160.
11. Pong VM, Zainal Abidin MA, Almaliky BSA, Kadir J,
Wong MY. Isolaon, Fruing and Pathogenicity of
Marasmiellus palmivorus (Sharples) Desjardin (comb.
prov.) in Oil Palm Plantations in West Malaysia.
Pertanika J. Trop. Agric. Sci. 2012; : 38 – 48.
12. Thiruchchelvan N, Thirukkumaran G, Mikunthan G.
Banana stem rot disease; causal agent (Marasmiellus
sp.), host range and selecon of low cost media for
its culvaon. J. Nat. Prod. Plant Resour. 2013; 3(2):
97-104.
13. Amoako-Aah I, Akro AY, Bin Hakeem R, Asamoah
M, Kumi-Asare E. White thread blight disease
caused by Marasmiellus scandens (Massee) Dennis
& Reid on cocoa and its control in Ghana. African J.
Agricultural Res. 2016; 11(50): 5064-5070. hps://
doi.org/10.5897/AJAR2016.11681
14. Tamur HA, Mohsin LY, Al-Janabi JKA, Al-Yassiry ZAN.
Marasmiellus palmivorus as a new causal agent of
Reed Wilt disease in Iraq. Pak. J. Biotechnol. 2018;
(1): 29-35.
15. Sharples A. Palm diseases in Malaya. Malayan Agric.
J. 1928; (9–10): 313–360.
16. Dua, AK, Acharya K. A new host for the parasic
macrofungus Marasmius palmivorus Sharples
(Marasmiaceae). Current Sci. 2018; 114 (7): 1400-1402.
hps://doi.org/10.18520/cs/v114/i07/1400-1402
17. Tan Y-S, Desjardin DE, Perry BA, Vikineswary S,
Noorlidah A. Marasmius sensu stricto in Peninsular
Malaysia. Fungal Diver. 2009; 37: 9-100.
18. Kirk PM, Cannon PF, Minter DW, Stalpers, JA. Diconary
of the Fungi, 10th ed. CABI, Wallingford, UK, 2008.
19. Desjardin DE, Perry BA. The gymnopoid fungi
(Basidiomycota, Agaricales) from the Republic of
Sדo Tomי and Prםncipe, West Africa. Mycosph.
2017; 8(9): 1317–139. https://doi.org/10.5943/
mycosphere/8/9/5
20. Obaid AJ, Al-Janabi JKA, Taj-Aldi WR. Antifungal
www.microbiologyjournal.org1536Journal of Pure and Applied Microbiology
Tamur et al. J Pure Appl Microbiol, 13(3), 1525-1536 | September 2019 | hps://doi.org/10.22207/JPAM.13.3.24
Acvity of Anise Essenal Oil against Growth and
Morphological Characteristics of Trichophyton
Rubrum. J. Global Pharma. Technol. 2017; 7(9): 53-68.
21. Dewan MM, Sivasithamparam K. Ecacy of treatment
with a sterile red fungus for control of take-all in wheat.
New Zealand J. Crop Horcul. Sci. 1989; 17: 333-336.
hps://doi.org/10.1080/01140671.1989.10428053
22. Alnuaimy, AA, Al-Janabi JKA, Al-Obaidi LAH, Marjan
AF. The expression of resistance genes in tomato
induced by abioc and bioc factors against Fusarium
oxysporum f. sp. lycopersici. Internaonal J. Chem.
Tech. Res. 2017; (6): 838-850.
23. Umechuruba CF, Elenwo EN. Diagnosc Techniques
in Mycology. Beek Publishers, Port Hercout. 1999,
30 – 56.
24. Mohsen LY, Kadhim HJ, Al-Janabi JKA, Al-Yassiry ZAN.
Alternave culture media for growth and sporulaon
of Trichoderma harzianum. Pak. J. Biotechnol. 2017;
(4): 587-593.
25. Cherif M, Benhamou N. Cytochemical aspects of
chitin breakdown during the parasitic action of
a Trichoderma sp. on Fusarium oxysporum f. sp. radicis-
lycopersici. Phytopathol. 1990; : 1406-1414.
26. Kulkarni NS, Lingappa S. Compatibility of
entomopathogenic fungus Nomuraea rileyi (Farlow)
Samson with a fungicide carbendazim. Karnataka J.
Agric. Sci. 2001; (3): 819-821.
27. Corner EJH. The agaric genera Marasmius,
Chaetocalathus, Crinipellis, Heimiomyces, Resupinatus,
Xerula and Xerulina in Malesia. Beih. Nova Hedwigia
1996; 111: 1-175.
28. Saitou N, Nei M. The neighbor-joining method: A new
method for reconstrucng phylogenec trees. Mol.
Biol. Evol. 1987; (4):406-25.
29. Tamura K, Nei M, Kumar S. Prospects for inferring
very large phylogenies by using the neighbor-joining
method. Proc. Nat. Acad. Sci. (USA) 2004; : 11030-
11035. hps://doi.org/10.1073/pnas.0404206101
30. Kumar S, Stecher G, Tamura K. MEGA7: Molecular
Evoluonary Genecs Analysis version 7.0 for bigger
datasets. Mol. Biol. Evol. 2015; 33(7):1870–1874.
hps://doi.org/10.1093/molbev/msw054
31. Frye SR, Healy M. Molecular strain typing using
repetitive sequence-based PCR, In: Tang, Y.-W.,
Stratton, C.W. (Eds.), Advanced Techniques in
Diagnosc Microbiology, 1st ed. Springer, New York,
2006, 444–471. hps://doi.org/10.1007/0-387-32892-
0_26
32. Tom ovsk M, Kolaֽםk MS, Paסoutovב S, Homolka
L. Molecular phylogeny of European Trametes
(Basidiomycetes, Polyporales) species based on
LSU and ITS (nrDNA) sequences. Nova Hedwigia
2006; 3: 269-280. https://doi.org/10.1127/0029-
5035/2006/0082-0269
33. Peay KG, Kennedy PG, Bruns TD. Fungal community
ecology: a hybrid beast with a molecular master. BioSci.
2008; : 799–810. hps://doi.org/10.1641/B580907
34. Schoch, CL, Seifert KA, Huhndorf S, Robert V, Spouge
JL, Levesque CA, et al. Nuclear ribosomal internal
transcribed spacer (ITS) region as a universal DNA
barcode marker for Fungi. Proc. Nat. Acad. Sci. (USA)
2012; : 6241–6246.
35. Pe CA. Detecon and idencaon of microorganisms
by gene amplicaon and sequencing. Clin. Infect. Dis.
2007; : 1108–1114. hps://doi.org/10.1086/512818
36. Thiruchchelvan N. Thirukkumaran G, Mikunthan G. In
vitro Biological Control of Marasmiellus sp. The Causal
of Stem Rot of Banana Grown in Jana Peninsula, Sri
Lanka. Acad. J. Plant Sci. 2012; (3): 94-101.
37. Ravimannan N, Arulanantham R, Pathmanathan S,
Niranjan K. Alternave culture media for fungal growth
using dierent formulaon of protein sources. Ann.
Biol. Res. 2014: : 36-39.
38. Patale SS, Mukadam DS. Management of plant
pathogenic fungi by using Trichoderma species. Biosci.
Discov. 2011; 2(1): 36-37.