Feature-based characterisation approaches, based on assessment of individual topographic formations (features), are increasingly being applied to characterise complex surfaces. Feature-based characterisation consists of segmenting (partitioning) a topography in order to isolate interesting regions (features) that can then be assessed via dedicated procedures, for example via dimensional characterisation. Segmentation, and its ability to isolate the feature of interest, are at the core of any feature-based characterisation approach. In this work, three segmentation approaches are compared and validated as they are applied to the isolation of particles and spatter on various powder bed fusion surfaces. The investigated segmentation approaches are morphological segmentation on edges, contour stability analysis and active contours. A manual segmentation is performed to generate a reference result to assess the performance of the investigated segmentation methods. The methods are assessed based on identification of performance (capability of detecting the features) and accuracy of feature boundary detection (capability of identifying the correct feature boundaries). The assessment is based on computing a series of custom performance indicators developed for the purpose of the comparison and derived from the theory of binary classifiers. The proposed comparison method allows for the qualification and quantification of segmentation methods used for feature-based characterisation and can help determine the efficacy of a segmentation approach when applied to a certain test case. In future, it may be possible to use this methodology to investigate and compare how changing parameters for feature-based segmentation algorithms can result in more effective segmentation. Feature-based characterisation, topography segmentation, surface metrology, additive manufacturing