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... The surface plasmon-polaritons are an example of the SWs at the metaldielectric interface [6]. Investigation of the optical SWs is an essential area of plasmonics since they play an important role in the development of chemical sensors [7,8] and label-free biosensors [9,10]. Since the optical SWs are localized at the phase boundary, they have shallow penetration depth into the bulk medium. ...
... The recombinant E. coli cells transformed with plasmid pET21-GFP were grown in the Luria-Bertani (LB) broth with 8 mg/ml chloramphenicol (Panreac, Spain) and 150 µg/mL ampicillin (Amresco, USA) until the mid-log phase (optical density at 600 nm 0.5 optical units (o.u.) per ml and then induced with 1 mM IPTG. Induced E. coli cells were immobilized onto the pre-cleaned 1D PC surface with 0.1 mg/ml pAA 65 kDa (Sigma-Aldrich, USA) [10] for 10 min at room temperature, washed with phosphate buffer solution (PBS). ...
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We present a depth-localized illumination technique for wide-field fluorescence microscopy, based on long-range optical surface waves. This technique allows one to excite the fluorescence only in a thin near-substrate layer of the specimen. Our experimental setup is compatible with both upright and inverted microscopes. It provides fluorescent microscopic images, which are superior to the epifluorescence ones in signal-to-noise ratio, contrast, and detail. We demonstrate the applicability of our technique for imaging both bacterial and eukaryotic cells (E. coli and HeLa, respectively).
... The scan rate was 1 Hz. Height histograms allowed us to measure coating thickness [32]. As seen in the histogram in Figure 9a, the mean thickness of the APTES layer was 3.5 nm, and the mean height of roughness was 0.5 nm. ...
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We propose and demonstrate dendrimer-based coatings for a sensitive biochip surface that enhance the high-performance sorption of small molecules (i.e., biomolecules with low molecular weights) and the sensitivity of a label-free, real-time photonic crystal surface mode (PC SM) biosensor. Biomolecule sorption is detected by measuring changes in the parameters of optical modes on the surface of a photonic crystal (PC). We describe the step-by-step biochip fabrication process. Using oligonucleotides as small molecules and PC SM visualization in a microfluidic mode, we show that the PAMAM (poly-amidoamine)-modified chip’s sorption efficiency is almost 14 times higher than that of the planar aminosilane layer and 5 times higher than the 3D epoxy-dextran matrix. The results obtained demonstrate a promising direction for further development of the dendrimer-based PC SM sensor method as an advanced label-free microfluidic tool for detecting biomolecule interactions. Current label-free methods for small biomolecule detection, such as surface plasmon resonance (SPR), have a detection limit down to pM. In this work, we achieved for a PC SM biosensor a Limit of Quantitation of up to 70 fM, which is comparable with the best label-using methods without their inherent disadvantages, such as changes in molecular activity caused by labeling.
... To bind BSA with the PC chip surface, a 0.1 mg/mL solution in PBS was run through the flow cell until signal stabilization; then, the surface was rinsed with PBS for 2 min. As a comparison, we used two known methods for modifying the PC chip surface with APTES and with PAA and GA [30,37,50]. ...
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Here, we propose and study several types of quartz surface coatings designed for the high-performance sorption of biomolecules and their subsequent detection by a photonic crystal surface mode (PC SM) biosensor. The deposition and sorption of biomolecules are revealed by analyzing changes in the propagation parameters of optical modes on the surface of a photonic crystal (PC). The method makes it possible to measure molecular and cellular affinity interactions in real time by independently recording the values of the angle of total internal reflection and the angle of excitation of the surface wave on the surface of the PC. A series of dextrans with various anchor groups (aldehyde, carboxy, epoxy) suitable for binding with bioligands have been studied. We have carried out comparative experiments with dextrans with other molecular weights. The results confirmed that dextran with a Mw of 500 kDa and anchor epoxy groups have a promising potential as a matrix for the detection of proteins in optical biosensors. The proposed approach would make it possible to enhance the sensitivity of the PC SM biosensor and also permit studying the binding process of low molecular weight molecules in real time.
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Background. Despite on the general trend towards decreasing the incidence of newly diagnosed active forms of tuberculosis, the situation with spreading of this disease in Russian Federation remains extremely tense. At the same time, the diagnosis is carried out according to the standard scheme, which takes about a month; another month takes test formulation for drug sensitivity. Thus, the development of new methods for diagnostics and typing of mycobacteria, as well as practice implementation of these developments is an urgent direction. Modern developments in the field of microfluidic technologies open up great opportunities in this direction. Aim. Development of a method for identification and typing of Mycobacterium tuberculosis using a label-free biosensor on surface waves in a one-dimensional photonic crystal (PC SM biosensor). Methods. Oligonucleotide probes were selected and synthesized as DNA targets for M. tuberculosis typing. The photonic crystal surface was modified with aqueous solutions of (3-aminopropyl)triethoxysilane, Leuconostoc mesenteroides dextrans and bovine serum albumin. Experiments were carried out using a PC SM biosensor. Results. Sequences of detecting oligonucleotide probes were selected for spoligotyping of M. tuberculosis on the PC SM biosensor. Modification of their 3'-ends was carried out in order to create extended single-stranded regions that are not subject to the formation of secondary structures and facilitate hybridization with a single-stranded DNA target. Several series of experimental modifications of the PC surface were carried out by using L. mesenteroides dextrans with different functional groups (including detection of the modification results real time) with simultaneous registration of the increment layer size and volume refractive index of the mixture, which excludes the use of a reference cell. Other experiments were carried out to detect the specific binding of biotinylated oligonucleotide probes to the modified PC surface. Conclusions. A technique for the design of probes was developed and a model system of oligonucleotides for the detection of single-stranded DNA using a PC biosensor was proposed. The developed technique of modification of the PC surface with dextrans from L. mesenteroides, which allows to increase the sensitivity of detection of oligonucleotides using the PC SM biosensor. This approach will further expand the panel of diagnostic probes, including identification of resistance markers.
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We investigated the antimicrobial properties of the cationic polymer polyallylamine (PA) when covalently bonded to glass. The objective was to obtain a robust attachment, yet still allow extension of the polymer chain into solution to enable interaction with the bacteria. The PA film displayed strong antimicrobial activity against Staphylococcus epidermidis , Staphylococcus aureus , and Pseudomonas aeruginosa , which includes both Gram-positive and Gram-negative bacteria. Glass surfaces were prepared by a straightforward two-step procedure of first functionalizing with epoxide groups using 3-glycidoxypropyltrimethoxy silane (GOPTS) and then exposing to PA so that the PA could bind via reaction of a fraction of its amine groups. The surfaces were characterized using X-ray photoelectron spectroscopy and Fourier transform infrared spectroscopy to verify the presence of the polymer on the surface, zeta potential measurements to estimate the surface charge of the films, and atomic force microscopy to determine the extension of the polymer chains into solution. Antimicrobial properties of these coatings were evaluated by spraying aqueous suspensions of bacteria on the functionalized glass slides, incubating them under agar, and counting the number of surviving cell colonies.
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Here we show that ionic self-assembly of simple biological tectons can be used to synthesize stable and highly ordered molecular structures. In particular, nucleotides and charged polypeptides can be assembled to form a complex analogous to DNA under relatively benign conditions. The combination of polylysine and pure dGMP leads to a fourfold ladder structure stabilizing an interior G-quartet structure by four polypeptide scaffolds. Making use of the Watson–Crick G∶C base pairing motive leads to double-stranded complexes. Interestingly, these complexes show stable DNA-like organization in aqueous solutions, as proven by gel electrophoresis and intercalation experiments
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A straightforward immunoassay based on surface enhanced fluorescence (SEF) has been demonstrated using a fluorescent immune substrate and antibody functionalized-silver nanoparticles. Unlike the conventional SEF-based immunoassay, which usually uses the dye-labeled antibodies and the metallic nanostructured-substrates, the presented immune system does not need the antibodies to be labeled with dye molecules. Thus, this immunoassay can be easily applied to the detection of a wide range of target antigens, which is of great importance for its practical application. The experimental results show that this immunoassay has a good specificity as well as the capacity of quantitative detection. Basically, the surface density of the immuno-adsorbed silver nanoparticles increases with the increased amount of target antigens, resulting in a fluorescence enhancement up to around 7 fold. The dose-responsive performance of the immunoassay has been investigated and the limit of detection (LOD) is 1 ng/mL. Due to its simple preparation method and the wide range of detectable antigens, this presented immunoassay is expected to be helpful for extending the SEF-based application.
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Layer-by-layer (LbL) assembly of oppositely charged polyelectrolytes was used to coat fluorescein particles. These particles, with a size of 4−9 μm, were prepared by precipitation of fluorescein at pH 2. Polystyrensulfonate (PSS) and polyallylamine (PAH) were used to form a polyelectrolyte shell on the fluorescein core. The permeation of fluorescein molecules through the polyelectrolyte shell during core dissolution was monitored at pH 8 by the increasing fluorescence intensity as a result of dequenching. The number of polyelectrolyte layers sufficient to sustain fluorescein release was found to be 8−10. Increasing the number of layers prolonged the core dissolution time for minutes. The permeability of polyelectrolyte multilayers of the thickness of 20 nm for fluorescein is about 10-9 m/s. The features of the release profile and possible applications of the LbL method for shell formation in order to control release properties for entrapped materials are outlined.
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Coadsorption of polymers and surfactants is a poorly understood process that occurs in a variety of complex fluid applications. In single-component solutions, the cationic polyelectrolyte polylysine and the cationic surfactant cetyltrimethylammonium bromide (CTAB) both adsorb to negatively charged silica surfaces. Here we use scanning angle reflectometry to contrast adsorption from single-component solutions with a sequential adsorption process and a coadsorption process. When adsorbed from single-component solutions, polylysine adsorbs irreversibly, whereas CTAB adsorption is reversible. In the sequential adsorption case, CTAB neither displaces nor adsorbs to preadsorbed polylysine layers. When solutions contain both CTAB and polylysine, they coadsorb to form mixed layers. Mixed layer formation is indicated by a dramatic alteration of the kinetics and reversibility of adsorption compared to either single-component case. The amounts of CTAB and polylysine adsorbed in the mixed layers are both similar to the amounts adsorbed from the respective single-component solution.
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The stability of hollow microcapsules against environmental alterations such as pH, osmotic pressure, and temperature is a critical issue for practical applications. It is demonstrated here that multilayer capsules assembled from poly(allylamine hydrochloride) (PAH) and sodium poly(styrene sulfonate) (PSS) can be considerably stabilized by cross-linking of only the PAH component with glutaraldehyde (GA). Formation of a Schiff base between the aldehyde and the amine groups was evidenced by UV−vis spectroscopy. After cross-linking by 2% GA for 2 h, an apparently thicker capsule wall was obtained with higher folds, and no alteration of the macroscopic topology of the capsules was observed after incubation in 0.1 M NaOH for 24 h. The cross-linking significantly improved the mechanical strength of the capsules to resist osmotic pressure induced invagination. Consequently, both the critical pressure and the elasticity modulus (680 MPa) of the capsule wall were doubled compared with that of the control. The cross-linking also greatly lowered the permeability of the capsule wall, as evidenced by confocal laser scanning microscopy and fluorescence recovery after photobleaching. Quantitative analysis revealed that the permeation coefficient for dextran (Mw 250 kD) was reduced by a factor of 3 after cross-linking.
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Vascular tissue engineering aims to develop implantable blood-vessels, exhibiting biological and biomechanical characteristics close to those of the native vessels. The ultimate goal of our group is to engineer suitable blood vessel substitutes which could be stored for a long time in vascular bank conditions.First attempts tried to develop coating procedures allowing endothelial cells (EC) differentiation, adhesion and retention on current vascular substitutes but the weak in vivo patency of these grafts was related. Since 2003, our group have been evaluated a new surface modification of internal surface of blood vessels based on polyelectrolyte films coating. The layer-by-layer self-assembly and the resulting polyelectrolyte multiplayer films (PEM) is a simple and versatile way to engineer surfaces with highly specific properties. Previous studies indicated that the poly(sodium-4 styrene sulfonate)/poly (allylamine hydrochloride) PSS/PAH multilayered films when ended by PAH, induce strong adhesion and retention of mature EC which spread and keep their phenotype as well on glass, on expanded polytetrafluoroethylene ePTFE and on cryopreserved arteries. The mechanical properties (compliance), leading to early intimal hyperplasia and graft failure, were lost after artery cryopreservation. We have demonstrated that the compliance and elasticity restoration of PEM treated cryopreserved arteries close to native arteries.In other respect, the use of the circulating progenitor which could be differentiated into matures vascular cell offers new opportunities in vascular engineering. Currents protocols, expend at least 1 month to observe both smooth muscle (SMCs) and endothelium (ECs)-like morphology and about two months for confluent monolayer cells. The progenitor cells cultivated on PEM treated glass showed mature and functional vascular cells (SMCs and ECs) development after only 14 days of culture. The morphological appearance, mature and healthy phenotype markers expression and repartition of differentiated cells are close to mature cells.Challenge now is to build up in less a month, an autologous cellularized vascular graft using patient peripheral stem cells.
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Two types of hexaglycylamide (HGA) epitaxial lamellar structures coexisting on the surface of highly oriented pyrolytic graphite (HOPG) exposed to water solutions were studied by high-resolution atomic force microscopy (AFM). Lamellae are distinguished by growth direction and by morphology. The lamellae of the first type (L1) produced by depositions from more dilute solutions are close-packed with a period of ∼5.2 nm, twice the HGA molecular length, and form highly ordered domains morphologically similar to the lamellar domains of alkanes. The less-ordered lamellae of the second type (L2) appear at intermediate and large HGA concentrations and demonstrate variable lamellar width, morphological diversity, and a tendency to merge. The interlamellar separation in the domains of close-packed L2 lamellae varies with the discrete increment ∼2.5 nm; the most frequently observed value is ∼7.5-8.0 nm corresponding to the triple HGA molecular length. The growth directions of lamellae of each type have sixfold rotational symmetry indicating epitaxy with graphite; however, the rosettes of L1 and L2 lamellae orientations are misaligned by 30°. The molecular modeling of possible HGA epitaxial packing arrangements on graphite and their classification have been conducted, and the energetically preferable structures are selected. On this basis, the structural models of the L1 and L2 lamellae are proposed explaining the experimentally observed peculiarities as follows: (1) the L1 and L2 lamellae are respectively parallel and antiparallel β-sheets with two HGA molecules in the unit cell oriented normally to the lamellae boundaries, (2) HGA molecules in L1 and L2 lamellae have different orientations with respect to the graphite lattice, respectively along the directions <1120> and <1010>, (3) L1 lamella is the assembly of two hydrogen-bonded parallel β-sheets oriented head-to-head, (4) L2 lamellae are assemblies of several molecular rows (antiparallel β-sheets) cross-linked by hydrogen bonds. The AFM observations indicate that the covering of the hydrophobic graphite by the dense, closely packed, well-ordered monolayers of hydrophilic oligopeptide is possible.
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Protein/surface interactions are well known to play an important role in various biological phenomena and to determine the ultimate biofunctionality of a given material once it is in contact with a biological environment. Control over the interactions between proteins and material surfaces are not only of great theoretical interest but also of crucial importance for many biomedical applications. In this Feature Article, we summarize various successful approaches used in our laboratory and other groups for controlling protein adsorption through chemical modification of the surface and/or the introduction of specific topographic features. Some perspectives on future research in these areas are also presented.
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In this study, poly(allylamine hydrochloride) (PAA/HCl) was cross-linked with fermentation bacterial waste (Escherichia coli) in order to introduce a large amount of amine groups as binding sites for potassium hexachloroplatinate(IV), as a model anionic pollutant. The sorption performance of PAA/HCl-modified E. coli was greatly affected by the dosages of PAA/HCl and crosslinker (epichlorohydrin, ECH), and by the pH of the modification reaction medium. These factors were optimized through the response surface methodology (RSM). A three-level factorial Box-Behnken design was performed, and a second-order polynomial model was successfully used to describe the effects of PAA/HCl, ECH and the pH on the Pt(IV) uptake (R(2) = 0.988). The optimal conditions that were obtained from the RSM were 0.49 g of PAA/HCl, 0.05 mL of ECH and pH 10.02, with 1.0 g of dried E. coli biomass. The biosorption isotherm and kinetics studies were carried out in order to evaluate the sorption potential of the PAA/HCl-modified E. coli that was prepared under the optimized conditions. The sorption performance of the developed bacterial biosorbent was 4.36 times greater than that of the raw E. coli. Desorption was carried out using 0.05 M acidified thiourea and the biosorbent was successfully regenerated and reused up to four cycles. Therefore, this simple and cost-effective method suggested here is a useful modification tool for the development of high performance biosorbents for the recovery of anionic precious metals.
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A high-precision optical biosensor technique capable of independently determining the refractive index (RI) of liquids is presented. Photonic crystal surface waves were used to detect surface binding events, while an independent registration of the critical angle was used for accurate determination of the liquid RI. This technique was tested using binding of biotin molecules to a streptavidin monolayer at low and high biotin concentrations. The attained baseline noise is 5x10(-13) m/Hz(1/2) for adlayer thickness changes and 9x10(-8) RIU/Hz(1/2) for RI changes.
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Optical biosensors have played a key role in the selective recognition of target biomolecules and in biomolecular interaction analysis, providing kinetic data about biological binding events in real time without labeling. The advantages of the label-free concept are the elimination of detrimental effects from labels that may interfere with fundamental interaction and the absence of a time-consuming pretreatment. The disadvantages of all label-free techniques--including the most mature one, surface plasmon resonance (SPR) technique, are a deficient sensitivity to a specific signal and undesirable susceptibilities to non-specific signals, e.g., to the volume effect of refraction index variations. These variations arise from temperature fluctuations and drifts and they are the limiting factor for many state-of-the-art optical biosensors. Here we describe a new optical biosensor technique based on the registration of dual optical s-polarized waves on a photonic crystal surface. The simultaneous registration of two different optical modes from the same surface spot permits the segregation of the volume and the surface signals, while the absence of metal damping permits an increase in the propagation length of the optical surface waves and the sensitivity of the biosensor. The technique was tested with the binding of biotin molecules to a streptavidin monolayer that has been detected with a signal/noise ratio of about 15 at 1 s signal accumulation time. The detection limit is about 20 fg of the analyte on the probed spot of the surface.
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Chlamydia species are obligate intracellular bacteria that require growth inside mammalian cells for propagation and survival. As a result, Chlamydia cannot be grown on conventional bacteriological medium. This property makes Chlamydia difficult organisms to grow and maintain in the laboratory. Up until 1965, passage in the yolk sac of the embryonated hen egg was the only way to isolate and propagate the organism. Since then, a tissue culture system has been available that allows easier laboratory culture of the Chlamydia species. However, with the exception of the LGV serovars, most C. trachomatis strains do not readily infect tissue culture cells. Chemical or mechanical assistance is used to increase their infectivity. Today, large numbers of infectious organisms can be purified through Renografin density gradient centrifugation of infected cell lysates. The ability to propagate C. trachomatis in the laboratory has greatly increased the understanding of the pathogenesis of C. trachomatis organisms.
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The highly siliceous cell walls of diatoms are probably the most outstanding examples of nanostructured materials in nature. Previous in vitro experiments have shown that the biomolecules found in the cell walls of diatoms, namely polyamines and silaffins, are capable of catalysing the formation of silica nanospheres from silicic/oligosilicic acid solutions. In a previous publication, silica precipitation was found to be strictly correlated with a phosphate-induced microscopic phase separation of the polyamines. The present contribution further characterises the phase separation behaviour of polyamines in aqueous solutions. In particular, a pronounced pH-dependence of the average particle diameter is found. It is, furthermore, shown that the ability of phosphate ions to form polyamine aggregates in aqueous solutions cannot be a purely electrostatic effect. Instead, a defined hydrogen-bonded network stabilised by properly balanced electrostatic interactions should be considered. Finally, solid-state 31P NMR studies on phase-separated polyamines, synthetic silica precipitates, and diatom cell walls from the species Coscinodicus granii support the assumption of a phosphate-induced phase separation process taking place during cell wall formation.
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A single layer of poly(allylamine) with a covalently attached osmium pyridine-bipyridine complex adsorbed onto a Au surface modified by mercaptopropanesulfonate has been studied theoretically with a molecular approach and experimentally by cyclic voltammetry. These investigations have been carried out at different pHs and ionic strengths of the electrolyte solution in contact with the redox polyelectrolyte modified electrode. The theory predicts strong coupling between the acid-base and redox equilibria, particularly for low ionic strength, pH close to the pKa, and high concentration of redox sites. The coupling leads to a decrease in the peak potential at pH values above the apparent pKa of the weak polyelectrolyte, in good agreement with the experimental pH dependence at 4 mM NaNO3. Theoretical calculations suggest that the inflection point in the peak position versus pH curves can be used to estimate the apparent pKa of the amino groups in the polymer. Comparison of the apparent pKa for PAH-Os in the film with that of poly(allylamine) reported in the literature shows that the underlying charged thiol strongly influences charge regulation in the film. A systematic study of the film thickness and the degree of protonation in sulfonate and amino groups for solutions of different pH and ionic strength shows the coupling between the different interactions. It is found that the variation of the film properties has a non-monotonic dependence on bulk pH and salt concentration. For example, the film thickness shows a maximum with electrolyte ionic strength, whose origin is attributed to the balance between electrostatic amino-amino repulsions and amino-sulfonate attractions.
  • O V Morozova
O.V. Morozova, et al. International Journal of Adhesion and Adhesives 92 (2019) 125-132
Cultivation and laboratory maintenance of Chlamydia trachomatis
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