Although pigs are commonly infected with Cryptosporidium spp. and Giardia duodenalis,
including potentially zoonotic species or genotypes, little is known about age-related infection
levels, seasonal differences and genetic variation in naturally infected pigs raised in organic
management systems. Therefore, the current study was conducted to assess seasonal and agerelated
variations in prevalence and infection intensity of Cryptosporidium and Giardia,
evaluate zoonotic potential and uncover correlations between species/genotypes, infection
intensity and faecal consistency. Shedding of oocysts and cysts ((oo-)cysts) was monitored at
quarterly intervals (September 2011 to June 2012) in piglets (n=152), starter pigs (n=234),
fatteners (n=230) and sows (n=240) from three organic farms in Denmark. (Oo-)cysts were
quantified by immunofluorescence microscopy; and 56/75 subsamples from Cryptosporidium
infected pigs were successfully analysed by PCR amplification and partial sequencing of the
small subunit (SSU) 18S rRNA and hsp70 genes, while 13/67 Giardia subsamples were
successfully analysed by amplification and partial sequencing of the 18S rRNA and the gdh
genes. Altogether, Cryptosporidium or Giardia infections were observed in 40.9% (350/856)
and 14.0% (120/856) of the pigs, respectively, including 8.2% (70/856) infected with both
parasites. Prevalence, intensity of infections and presence of Cryptosporidium species varied
significantly between age-groups; 53.3% piglets, 72.2% starter pigs, 40.4% fatteners and 2.9%
sows were infected with Cryptosporidium, whereas 2.0% piglets, 27.4% starter pigs, 17.8%
fatteners and 5.0% sows were infected with Giardia. The overall prevalence was stable
throughout the year, except for dual-infections that were more prevalent in September and
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December (p<0.05). The infection intensity was age-related for both parasites, and dualinfected
pigs tended to excrete lower levels of oocysts compared to pigs harbouring only
Cryptosporidium. Likewise, pigs infected with C. scrofarum excreted fewer oocysts (mean CPG:
54,848±194,508 CI: 9085–118,781) compared to pigs infected with C. suis (mean OPG:
351,035±351,035 CI: 67,953–634,117). No correlation between faecal consistency and (oo-
)cyst excretion levels was observed.
Of the successfully genotyped isolates, 38/56 (67.9%) were C. scrofarum and 18/56 (32.1%)
were C. suis, while the livestock specific G. duodenalis Assemblage E was detected in 11/13
(84.6%) isolates and the potentially zoonotic Assemblage A was identified in 2/13 (15.4%)
isolates. Piglets exclusively hosted C. suis, with one exception, while starter pigs and fatteners
predominantly hosted C. scrofarum. As organic pigs are partly reared outdoors, environmental
contamination with Cryptosporidium and Giardia is inevitable. Nevertheless, the present data
indicate that the potential public health risk associated with both of these parasites in Danish
organic pig production seems to be negligible.