Research over the past decade has identified several of the key limiting features in multidrug resistance (MDR) cancer ther-apy applications, such as evolving glycoprotein receptors at the surface of the cell that limit therapeutic uptake, metabolic changes leading to protection from multidrug resistant mediators by enhanced degradation or efflux of therapeutics, and difficulty ensuring retention of intact and functional drugs once endocytosed. Nanoparticles have been demonstrated to be effective delivery vehicles for a plethora of therapeutic agents and, in the case of nucleic acid-based agents, they provide protective advantages. Functionalizing cell penetrating peptides (CPPs), also known as protein transduction domains, onto the surface of a fluorescent quantum dots creates a labelled delivery package to investigate the nuances and difficulties of drug transport in MDR cancer cells for potential future clinical applications of diverse nanoparticle therapeutic delivery strategies. In this study, eight distinct cell penetrating peptides were used (CAAKA, VP-22, HIV-TAT, Ku-70, and hCT(9-32), integrin-β3, HIV-gp41, and K-FGF) to examine the different cellular uptake profiles in cancer versus drug resistant melano-ma (A375 & A375-R), mesothelioma (MSTO & MSTO-R), and glioma (rat 9L & 9L-R, and human U87 & LN18), cell lines. The results of this study demonstrate that cell penetrating peptide uptake varies with the amount of drug resistance and cell type, likely due to changes in cell surface markers. This study provides insight to developing functional nanoplatform deliv-ery systems in drug resistant cancer models.