Article

Inorganic-Organic Hybrid Tongue-Mimic for Time-Resolved Luminescent Noninvasive Pattern and Chiral Recognition of Thiols in Biofluids toward Healthcare Monitoring

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Abstract

In this work, manganese(II)-doped zinc/germanium oxide nanoparticles (Mn@ZGNPs) have been hydrothermally synthesized to equip with appealing time-resolved luminescence (TRL). Interestingly, we reveal that they can be readily quenched (“turn off”) via a facile surface coating with bioinspired polydopamine (PDA) polymerized from dopamine (DA), resulting from PDA-triggered TRL resonance energy transfer (TRL-RET). By Integrated with the thiol-induced inhibition of PDA formation, an ingenious inorganic-organic hybrid tongue-mimic sensor array is thus unveiled for noninvasive pattern recognition of thiols in biofluids in a TRL-RET-reversed "turn on" format toward healthcare monitoring. The sensing principle is based on the new finding that there are differential inhibitions from thiols against the polymerization of DA with various concentrations. Furthermore, density function theory (DFT) studies excellently prove our sensing principle and experimental results, reinforcing the power of the presented system. More importantly, chiral recognition of varied concentrations and mixtures of cysteine enantiomers using our platform are also been demonstrated, promising its practical usage. This is a novel concept of inorganic-organic hybrid-based pattern and chiral recognition platform for TRL background-free sensing and would sprout more novel relevant strategies toward broader applications.

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... Illustration of the discrimination of thiols in biofluids by the "turn on" assay based on Mn(II)-doped zinc/germanium oxide nanoparticles and DA developed by Zhang and coworkers. Adapted from Ref.[37] with permission from the American Chemical Society, copyright 2018. ...
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This article is an overview of the present and ongoing developments in the field of nanomaterial-based sensors for enabling fast, relatively inexpensive and minimally (or non-) invasive diagnostics of health conditions with follow-up by detecting volatile organic compounds (VOCs) excreted from one or combination of human body fluids and tissues (e.g., blood, urine, breath, skin). Part of the review provides a didactic examination of the concepts and approaches related to emerging sensing materials and transduction techniques linked with the VOC-based non-invasive medical evaluations. We also present and discuss diverse characteristics of these innovative sensors, such as their mode of operation, sensitivity, selectivity and response time, as well as the major approaches proposed for enhancing their ability as hybrid sensors to afford multidimensional sensing and information-based sensing. The other parts of the review give an updated compilation of the past and currently available VOC-based sensors for disease diagnostics. This compilation summarizes all VOCs identified in relation to sickness and sampling origin that links these data with advanced nanomaterial-based sensing technologies. Both strength and pitfalls are discussed and criticized, particularly from the perspective of the information and communication era. Further ideas regarding improvement of sensors, sensor arrays, sensing devices and the proposed workflow are also included.
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There is a close correlation between body health and the level of biofluid-derived metal ions, which makes it an attractive model analyte for non-invasive health monitoring. The present work has developed a novel nose/tongue-mimic chemosensor array based on bioinspired polydopamaine/polyethyleneimine copolymers (PDA/PEIn) for label-free fluorescent determination of metal ions in biofluids. Three types of PDA/PEIn (PDA/PEI6, PDA/PEI18 and PDA/PEI48) were prepared by using different concentrations of PEI to construct the proposed sensor array, which would lead to unique fluorescence response patterns upon challenged with metal ions for their pattern discrimination. The results show that as few as 3 PDA/PEIn sensors can successfully realize the largescale sensitive detection of metal ions in biofluids. Moreover, we have demonstrated that PDA/PEIn sensors are qualified for lifetime-based pattern discrimination application. Furthermore, the sensors can distinguish between different concentrations of metal ions, as well as a mixture of different metal ions in biofluids, even the mixtures with different valence states. The method promises the simple, rapid, sensitive, and powerful discrimination of metal ions in accessible biofluids, showing the potential applications in the diagnosis of metal ion-involved diseases.
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Fluorescence sensors for biologically active molecules are catching attention due to their good performance and simplicity. Herein, we report a fluorescence sensor for the selective and sensitive detection of dopamine (DA) in aqueous samples. MoS2 nanohybrid material composed of MoS2 quantum dots dispersed over MoS2 nanosheets (MoS2 QDNS) in alkaline medium was employed as the fluorescent probe. In the presence of DA, the photoluminescence intensity of MoS2 QDNS was quenched linearly with increasing concentration of the former. The quenching mechanism was found to operate via Förster resonance energy transfer (FRET), and the inner filter effect (IFE). The QDNS sensor demonstrates high selectivity towards DA, especially in the presence of ascorbic acid and uric acid, which are the most potential interference for DA in biological systems. The sensitivity of the system was as low as 0.9 nM and demonstrated two linear ranges from 2.5 nM to 5.0 μM and from 5.0 μM to 10.4 μM. The sensor demonstrated a remarkable ability in the analysis of real blood samples and showed excellent potential for visual detection.
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Metabolism is a fundamental process of life. However, non-invasive measurement of local tissue metabolism is limited today by a deficiency in adequate tools for in vivo observations. We designed a multi-modular platform that explored the relation between local tissue oxygen consumption, determined by label-free optoacoustic measurements of hemoglobin, and concurrent indirect calorimetry obtained during metabolic activation of brown adipose tissue (BAT). By studying mice and humans, we show how video-rate handheld multi-spectral optoacoustic tomography (MSOT) in the 700-970 nm spectral range enables non-invasive imaging of BAT activation, consistent with positron emission tomography findings. Moreover, we observe BAT composition differences between healthy and diabetic tissues. The study consolidates hemoglobin as a principal label-free biomarker for longitudinal non-invasive imaging of BAT morphology and bioenergetics in situ. We also resolve water and fat components in volunteers, and contrast MSOT readouts with magnetic resonance imaging data.
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Background: Myopia remains a leading cause of vision loss and visual disability in Ukraine (75%) and one of the most common ocular disorders worldwide. Most of available biological materials like blood and tear fluid can be used to measure the levels of these compounds, and thus to assess the relative balance between lipid peroxidation (LPO) and antioxidant system (AOS) in myopes. This will enable to find a pharmacological way for normalizing this balance in order to prevent degenerative retinal changes, and to stop the progression of myopia. Purpose: To evaluate the antioxidant status in patients with different severity of myopia based on the activity of enzymes (glutathione-S-Transferase (GST), catalase (CAT), and glutathione peroxidase (GPx)) in their tear fluid and of sulfur-containing protein groups in their blood and tear fluid before and after treatment with Fakovit, a thiol agent. Materials and Methods: The Facovit treatment group included 67 myopes (low myopes, n = 26; medium myopes, n = 22; high myopes, n = 19) aged 12-24 years, whereas the control group included 67 aged-matched who did not receive Facovit treatment. In addition, 30 aged-matched healthy individuals were included into the study. Results: At baseline, GPx neutralized lipid hydroperoxides too slowly, and GST activity was markedly inhibited, with GST activity in the tear fluid and in the blood in low, moderate and high myopes of the Fakovit treatment group being statistically significantly lower than in normal individuals. In addition, CAT activity in the tear fluid in moderate and high myopes of this group was low. The baseline levels of free and protein-bound sulphydryl and disulphide groups in the tear fluid in low, moderate and high myopes of the Fakovit treatment group were abnormal, indicating substantial abnormalities of the AOS, with the tear fluid levels of free sulfhydryl groups and of protein-bound sulfhydryl groups being statistically significantly lower, and with the tear fluid levels of free disulphide groups and of protein-bound disulphide groups being higher than in normal individuals. Biochemical study demonstrated that the treatment including the thiol agent resulted in a substantial increase in the activity of enzymes (GPx and GST) of the detoxification system. Consclusion: Fakovit was found to have a substantial antioxidation effect on thiols in myopia, with increase in the levels of free sulfhydryl groups and decrease in the levels of protein-bound disulphide groups in the blood and tear fluid.
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In the past three decades, our understanding of brain-behavior relationships has been significantly shaped by research using non-invasive brain stimulation (NIBS) techniques. These methods allow non-invasive and safe modulation of neural processes in the healthy brain, enabling researchers to directly study how experimentally altered neural activity causally affects behavior. This unique property of NIBS methods has, on the one hand, led to groundbreaking findings on the brain basis of various aspects of behavior and has raised interest in possible clinical and practical applications of these methods. On the other hand, it has also triggered increasingly critical debates about the properties and possible limitations of these methods. In this review, we discuss these issues, clarify the challenges associated with the use of currently available NIBS techniques for basic research and practical applications, and provide recommendations for studies using NIBS techniques to establish brain-behavior relationships.
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Early detection of breast cancer is a critical component in patient prognosis and establishing effective therapy regimens. Here, we developed an easily accessible yet potentially powerful sensor to detect cancer cell targets by utilizing seven dual-ligand cofunctionalized gold nanoclusters (AuNCs) as both effective cell recognition elements and signal transducers. On the basis of this AuNC multichannel sensor, we have successfully distinguished healthy, cancerous and metastatic human breast cells with excellent reproducibility and high sensitivity. Triple negative breast cancer cells (TNBCs), which exhibit low expression of the estrogen receptor, progesterone receptor, and human epidermal growth factor receptor-2, were identified. The high accuracy of the blind breast cell sample tests further validates the practical application of the sensor array. In addition, the versatility of the sensor array is further justified by identifying amongst distinct cell types, different cell concentrations and cell mixtures. Notably, the drug-resistant cancer cells can also be efficiently discriminated. Furthermore, the dual-ligand cofunctionalized AuNCs can efficiently differentiate different cells from the peripheral blood of tumor-free and tumor-bearing mice. Taken together, this fluorescent AuNCs based array provides a powerful cell analysis tool with potential applications in biomedical diagnostics.
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A simple and novel method for evaluating antioxidants in complex biological fluids has been developed based on the interaction of dye-labeled single-strand DNA (ssDNA) and polydopamine (PDA). Due to the interaction between ssDNA and PDA, the fluorescence of dye-labeled ssDNA (e.g. FITC-ssDNA, as donor) can be quenched by PDA (as acceptor) to the fluorescence “off” state through Förster resonance energy transfer (FRET). However, in the presence of various antioxidants, such as glutathione (GSH), ascorbic acid (AA), cysteine (Cys) and homocysteine (Hcys), the spontaneous oxidative polymerization reaction from DA to PDA would be blocked, resulting in the freedom of FITC-ssDNA and leading to the fluorescence “on” state. The sensing system shows great sensitivity for the monitoring of antioxidants in a fluorescent “turn on” format. The new strategy also exhibits great selectivity and is free from the interferences of amino acids, metal ions and the biological species commonly existing in brain systems. Moreover, by combining the microdialysis technique, the present method has been successfully applied to monitor the dynamic changes of the striatum antioxidants in rat cerebrospinal microdialysates during the normal/ischemia/reperfusion process. This work establishes an effective platform for in vivo monitoring antioxidants in cerebral ischemia model, and promises new opportunities for the research of brain chemistry, neuroprotection, physiological and pathological events.
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Two of the biggest challenges in medicine today are the need to detect diseases in a non-invasive manner, and to differentiate between patients using a single diagnostic tool. The current study targets these two challenges by developing a molecularly-modified Silicon Nanowire Field Effect Transistors (SiNW FETs) and showing its use in the detection and classification of many disease breathprints (lung cancer, gastric cancer, asthma and Chronic Obstructive Pulmonary Disease). The fabricated SiNW FETs are characterized and optimized based on a training set that correlated their sensitivity and selectivity towards volatile organic compounds (VOCs) linked with diseased states. The best sensors obtained in the training set are then examined under real-world clinical conditions, using breath samples from 374 subjects. Analysis of the clinical samples showed that the optimized SiNW FETs can detect and discriminate between almost all binary comparisons of the diseases under examination with >80% accuracy. Overall, this approach has the potential to support detection of many diseases in a direct positive way, which can reassure patients and prevent numerous negative investigations.
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An ambipolar poly(diketopyrrolopyrrole-terthiophene)-based field-effect transistor (FET) sensitively detects xylene isomers at low ppm levels with multiple sensing features. Combined with pattern-recognition algorithms, a sole ambipolar FET sensor, rather than arrays of sensors, can discriminate highly similar xylene structural isomers from one another.
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A simple colorimetric sensor array technique was developed for the detection of various different nanoparticles (NPs) in aqueous solutions. The sensor array consists of five different cross-reactive chemoresponsive dyes, whose visible absorbances change in response to their interactions with NPs. Although no single dye is specific for any one NP, the pattern of color changes for all dyes provides a unique molecular fingerprint for each type of NP studied. Based on the responses of various dyes, a semiquantitative determination of concentration of each type of NP could also be accomplished with excellent sensitivity (<100 ng/mL). A variety of chemically distinct NPs were unambiguously identified using a standard chemometric approaches, including gold nanospheres (2 through 40 nm diameter), gold nanorods (2.4 and 3.5 aspect ratios), and multifunctional carbon nanospheres without errors in 112 trials. This colorimetric approach may pave the way for a fast, reliable, and inexpensive method to detect nanopollution and to characterize the physiochemical properties of NPs.
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Copper ion (Cu(2+) ) and L-cysteine (CySH) are closely correlated with physiological and pathological events of Alzheimer's Disease (AD), however the detailed mechanism is still unclear, mainly owing to a lack of accurate analytical methods in live brains. Herein, we report a single biosensor for electrochemical ratiometric detection of Cu(2+) and CySH in live rat brains with AD. N,N-di-(2-picoly)ethylenediamine (DPEA) is first synthesized for specific recognition of Cu(2+) to form a DPEA-Cu(2+) complex. This complex shows high selectivity for CySH owing to the release of Cu(2+) from the complex through CySH binding to Cu(2+) center. In parallel, 5'-MB-GGCGCGATTTTTTTTTTTTT-SH-3' (HS-DNA-MB, MB=Methylene Blue) is designed as an inner-reference for providing a built-in correction to improve the accuracy. As a result, combined with the amplified effect of Au nanoleaves, our single ratiometric biosensor can be successfully applied in real-time detection of Cu(2+) and CySH in the live rat brains with AD. To our knowledge, this is the first report on the accurate concentrations of Cu(2+) and CySH in live rat brains with AD.
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An array of highly sensitive pressure sensors entirely made of biodegradable materials is presented, designed as a single-use flexible patch for application in cardiovascular monitoring. The high sensitivity in combination with fast response time is unprecedented when compared to recent reports on biodegradable pressure sensors (sensitivity three orders of magnitude higher), as illustrated by pulse wave velocity measurements, toward hypertension detection.
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We presented an extensible multidimensional sensor with conjugated nonspecific dye-labeled DNA sequences absorbed onto gold nanoparticles (DNA-AuNPs) as receptors. At the presence of target protein, DNA was removed from the surface of AuNPs due to the competitive binding, which resulted in a red-to-blue color change along with salt-induced aggregation of AuNPs for colorimetric analysis and fluorescent 'turn-on' signal of the labeled dye for fluorescence analysis. The orthogonal and complementary fluorescent and colorimetric signals obtained from each protein were applied to the distinguishment of different proteins. By simply changing the DNA sequences, more dual-channel sensing elements could be easily obtained and added into this multidimensional sensor. This enhanced its discriminating power to the proteins. With three sensing elements, our extensible multidimensional sensing platform exhibited excellent discrimination ability. 11 proteins at the concentration of 50 nM had been classified with accuracies of 100% by using linear discriminant analysis (LDA). Remarkably, two similar proteins (BSA and HSA) at various concentrations and the mixture of these two proteins with different molar ratios had been successfully discriminated in one LDA plot as well. Furthermore, in the presence of human urine sample, 10 proteins at 1.0 μM could also be well discriminated. The accuracy of discrimination of unknown samples was all 100% for these experiments. This strategy is a complement of the multidimensional sensing system and traditional sensor platform, offering a new way to develop sensitive array sensing systems.
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ABSTRACT A novel core-shell hybrid system based on upconversion fluorescent nanoparticles (UCNPs) and dopamine-melanin, has been developed for evaluation of antioxidant capacity of biological fluids. In this approach, dopamine-melanin nanoshells facilely formed on the surface of UCNPs act as ultra-efficient quencher for upconversion fluorescence, attributing to a photo-induced electron transfer mechanism. This spontaneous oxidative polymerization of dopamine induced quenching effect could be effectively prevented by the presence of various antioxidants (typically biothiols, ascorbic acid (Vitamin C) and Trolox). The chemical response of the UCNPs@dopamine-melanin hybrid system exhibited great selectivity and sensitivity toward antioxidants relative to other compounds at 100-fold higher concentration. Satisfactory correlation was established between the ratio of "anti-quenching" fluorescence intensity and the concentration of antioxidants. Besides the response of upconversion fluorescence signal, specific evaluation process for antioxidants could be visualized by the color change from colorless to dark grey accompanied with spontaneous oxidation of dopamine. The near infrared (NIR) excited upconversion nanoparticle-based antioxidant capacity assay (UNACA) platform was further used to evaluate the antioxidant capacity of cell extracts and human plasma, satisfied sensitivity, repeatability and recovery rate were obtained. This approach features easy preparation, fluorescence/visual dual mode detection, high specificity to antioxidants and enhanced sensitivity with NIR excitation, showing great potentials for screening and quantitatively evaluating antioxidants in biological systems.
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The unpolarized absorption and circular dichroism spectra of the fundamental vibrational transitions of the chiral molecule, 4-methyl-2-oxetanone, are calculated ab initio. Harmonic force fields are obtained using Density Functional Theory (DFT), MP2, and SCF methodologies and a 5S4P2D/3S2P (TZ2P) basis set. DFT calculations use the Local Spin Density Approximation (LSDA), BLYP, and Becke3LYP (B3LYP) density functionals. Mid-IR spectra predicted using LSDA, BLYP, and B3LYP force fields are of significantly different quality, the B3LYP force field yielding spectra in clearly superior, and overall excellent, agreement with experiment. The MP2 force field yields spectra in slightly worse agreement with experiment than the B3LYP force field. The SCF force field yields spectra in poor agreement with experiment.The basis set dependence of B3LYP force fields is also explored: the 6-31G and TZ2P basis sets give very similar results while the 3-21G basis set yields spectra in substantially worse agreements with experiment.
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An important advantage of pattern-based chemosensor sets is their potential to detect and differentiate a large number of analytes with only few sensors. Here we test this principle at a conceptual limit by analyzing a large set of metal ion analytes covering essentially the entire periodic table, employing fluorescent DNA-like chemosensors on solid support. A tetrameric "oligodeoxy-fluoroside" (ODF) library of 6,561 members containing metal-binding monomers was screened for strong responders to 57 metal ions in solution. Our results show that a set of nine chemosensors could successfully discriminate the 57 species, including alkali, alkaline earth, post-transition, transition and lanthanide metals. As few as six ODF chemosensors can detect and differentiate 50 metals at 100 µM, and a blind test with 50 metals further confirmed the discriminating power of the ODFs.
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Rational approaches to engineering polydopamine films with tailored properties for surface coating and functionalization are currently challenged by the lack of detailed information about the polymer structure and the mechanism of buildup. Using an integrated chemical and spectroscopic approach enables the demonstration of: a) a three-component structure of polydopamine, comprising uncyclized (catecholamine) and cyclized (indole) units, as well as novel pyrrolecarboxylic acid moieties; b) remarkable variations in the relative proportions of the cyclized and uncyclized units with starting dopamine concentration; c) the occurrence of oligomer components up to the tetramer level; d) the covalent incorporation of Tris buffer; and e) the role of dopamine quinone as a crucial control point for directing the buildup pathways and tuning the properties. The importance of the uncyclized amine-containing units in polydopamine adhesion is also highlighted. The proper selection of substrate concentration and buffer is thus proposed as a practical means of tailoring polydopamine functionality via control of competing pathways downstream of dopamine quinone.
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Polydopamine is fast becoming a popular polymer that is receiving increased attention from scientists from different areas of expertise. The physicochemical properties of polydopamine, as well as its potential applications are reviewed. Similar to the foot protein in mussels, polydopamine has also shown versatile adhesion capability to virtually all types of surfaces, and provides a general surface-coating strategy for researchers to functionalize some specific technique-related substrates. It easily reacts with numerous amine- and thiol-containing molecules based on Michael-type addition and Schiff base reactions and has strong metal chelating/redox capabilities, which imparts to materials with structural flexibility and the ability to tailor the coatings for producing diverse hybrid materials with specific functionalities. During investigations of the polymerization process, specific attention should be drawn to the thickness of the polydopamine film deposited on the substrates.
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The use of molecularly modified Si nanowire field effect transistors (SiNW FETs) for selective detection in liquid phase has been successfully demonstrated. In contrast, selective detection of chemical species in the gas phase has been rather limited. In this paper, we show that the application of artificial intelligence on deliberately controlled SiNW FET device parameters can provide high selectivity towards specific volatile organic compounds (VOCs). The obtained selectivity allows identifying VOCs in both single-component and multi-component environments as well as estimating the constituent VOC concentrations. The effect of the structural properties (functional group and/or chain length) of the molecular modifications on the accuracy of VOC detection is presented and discussed. The reported results have the potential to serve as a launching pad for the use of SiNW FET sensors in real-world counteracting conditions and/or applications.
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Inspired by the bio-adhesive ability of the marine mussel, a simple, versatile and powerful synthesis strategy was developed to prepare highly reproducible and permselective molecular sieve membranes by using polydopamine as a novel covalent linker. Attributing to the formation of strong covalent and non-covalent bonds, ZIF-8 nutrients are attracted and bound to the support surface, thus promoting the ZIF-8 nucleation and the growth of uniform, well intergrown and phase-pure ZIF-8 molecular sieve membranes. The developed ZIF-8 membranes show high hydrogen selectivity and thermal stability. At 150 ºC and 1 bar, the mixture separation factors of H2/CO2, H2/N2, H2/CH4, and H2/C3H8 are 8.9, 16.2, 31.5 and 712.6, with H2 permeances higher than 1.8 x 10-7 mol•m-2•s-1•Pa-1, which is promising for hydrogen separation and purification.
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The adhesive proteins secreted by mussels are applied to the surface modification of a wide range of inorganic and organic materials, resulting in the fabrication of multifunctional coatings for biomedical applications. The adhesive polymer film is formed from dopamine with a primary amine functional group while the surface-active polydopamine readily adhere to all surfaces including noble metals and metals with native oxide surfaces. Advances in soft ionization mass spectroscopy have enabled the characterization of the adhesives of mussels on smooth substrates. A mass-spectrometry technique detects the presence of dihyroxyindole oligomers in the adsorbed dopamine polymer, indicating that a similar oxidation mechanism is involved in the dopamine-derived polymer coating.
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We developed a colorimetric sensor array with reported protein aptamers as nonspecific receptors. We found that different target proteins could make the aptamer-protected AuNPs exhibit different aggregation behaviors in the presence of high concentration salt and cause various color change. Based on this phenomenon, we applied a series of reported protein aptamers as receptor array obtaining a distinct response pattern to each target protein. Seven proteins have been well distinguished with the naked eye at 50 nM level. Cancerous human cells have also been discriminated from noncancerous cells. This method is simple, label-free and sensitive. It will broaden the application filed of plasmonic nanoparticle-based sensors and give new direction of developing sensitive array sensing systems.
Article
A facile, economic and green one-step hydrothermal synthesis route using dopamine as source towards photoluminescent carbon nanoparticles (CNPs) is proposed. The as-prepared CNPs have an average size about 3.8 nm. The emission spectra of the CNPs are broad, ranging from approximately 380 (purple) to approximately 525 nm (green), depending on the excitation wavelengths. Due to the favorable optical properties, the CNPs can readily enter into A549 cells and has been used for multicolor biolabeling and bioimaging. Most importantly, the as-prepared CNPs contain distinctive catechol groups on their surfaces. Due to the special response of catechol groups to Fe(3+) ions, we further demonstrate that such wholly new CNPs can serve as a very effective fluorescent sensing platform for label-free sensitive and selective detection of Fe(3+) ions and dopamine with a detection limit as low as 0.32 μM and 68 nM, respectively. The new "mix-and-detect" strategy is simple, green, and exhibits high sensitivity and selectivity. The present method was also applied to the determination of Fe(3+) ions in real water samples and dopamine in human urine and serum samples successfully.
Article
The trolox equivalent antioxidant capacity (TEAC) assay is a popular method for assessing the capacity of a compound to scavenge ABTS radicals (ABTS). Under the conditions in which the assay is performed, the reaction between most antioxidants and ABTS does not reach completion within the time span applied. This leads to an underestimation of the TEAC of these antioxidants. In the present study, incubations with different concentrations of ABTS and a fixed concentration of antioxidant were performed. The decrease in ABTS concentration in 6 min was plotted against the initial concentration of ABTS and fitted by an exponential function. Extrapolation of the fit to an infinite excess of ABTS gives the maximal concentration of ABTS that can be scavenged by the antioxidant at the concentration employed. This can be used to determine the actual TEAC of antioxidants, i.e. the total antioxidant capacity.
Article
Despite the remarkable thermochemical accuracy of Kohn–Sham density-functional theories with gradient corrections for exchange-correlation [see, for example, A. D. Becke, J. Chem. Phys. 96, 2155 (1992)], we believe that further improvements are unlikely unless exact-exchange information is considered. Arguments to support this view are presented, and a semiempirical exchange-correlation functional containing local-spin-density, gradient, and exact-exchange terms is tested on 56 atomization energies, 42 ionization potentials, 8 proton affinities, and 10 total atomic energies of first- and second-row systems. This functional performs significantly better than previous functionals with gradient corrections only, and fits experimental atomization energies with an impressively small average absolute deviation of 2.4 kcal/mol.
Article
Iron is one of the most abundant metals found in senile plaques of post mortem patients with Alzheimer's disease. However, the interaction mode between iron ions and β-amyloid peptide as well as their precise affinity is unknown. In this study we apply ab initio computational methodology to calculate binding energies of Fe(2+/3+) with the His13-His14 sequence of Aβ, as well as other important ligands such as His6 and Tyr10. Calculations were carried out at the "MP2/6-311+G(2df,2p)"//B3LYP/6-31+G(d) level of theory and solvent effects included by the IEFPCM procedure. Several reaction paths for the binding of imidazole, phenol, and the His13-His14 fragment (modeled by N-(2-(1H-imidazol-4-yl)ethyl)-3-(1H-imidazol-4-yl)propanamide) were sequentially explored. The results show that the most stable complexes containing His13-His14 and phenolate of Tyr10 are the pentacoordinated [Fe(2+)(O-HisHis)(PhO(-))(H(2)O)](+) and [Fe(3+)(N-HisHis)(PhO(-))(H(2)O)](+) compounds and that simultaneous coordination of tyrosine and His13-His14 to Fe(2+/3+) is thermodynamically favorable in water at physiological pH. Computed Raman spectra confirm the conclusion obtained by Miura et al. ( Biochemistry 2000 , 39 , 7024 ) that tyrosine is coordinated to Fe(3+) but do not exclude coordination of imidazoles. Finally, calculations of standard reduction potentials indicate that phenol coordination reduces the redox activity of the iron/Aβ complexes.
Article
Chiral recognition is among the important and special modes of molecular recognition. It is highly desirable to develop a simple, rapid, sensitive, and high-throughput routine assay for chiral recognition. In this study, we demonstrate that nucleotide-capped Ag nanoparticles (AgNPs) can be used as an ultrahigh efficiency enantioseparation and detection platform for d- and l-cysteine. The aggregation of AgNPs is selectively induced by an enantiomer of cysteine, which allowed the rapid colorimetric enantiodiscrimination of cysteine without any prior derivatization and specific instruments and left an excess of the other enantiomer in the solution, thus resulting in enantioseparation. This is the first application of a nucleotide-capped AgNP-based biosensing platform for chiral recognition and opens new opportunities for design of more novel enantiosensing strategies and enantiospecific adsorbents and expansion of its application in different fields.
Article
Exposure of food proteins to certain processing conditions induces two major chemical changes: racemization of all L-amino acids (LAAs) to D-amino acids (DAAs) and concurrent formation of cross-linked amino acids such as lysinoalanine (LAL). The diet contains both processing-induced and naturally-formed DAA. The latter include those found in microorganisms, plants, and marine invertebrates. Racemization impairs digestibility and nutritional quality. Racemization of LAA residues to their D-isomers in food and other proteins is pH-, time-, and temperature-dependent. Although racemization rates of LAA residues in a protein vary, relative rates in different proteins are similar. The nutritional utilization of different DAAs varies widely in animals and humans. Some DAAs may exert both adverse and beneficial biological effects. Thus, although D-Phe is utilized as a nutritional source of L-Phe, high concentrations of D-Tyr in such diets inhibit the growth of mice. Both D-Ser and LAL induce histological changes in the rat kidney. The wide variation in the utilization of DAAs is illustrated by the fact that, whereas D-Meth is largely utilized as a nutritional source of the L-isomer, D-Lys is not. Similarly, although L-CysSH has a sparing effect on L-Meth when fed to mice, D-CysSH does not. Since DAAs are consumed as part of their normal diet, a need exists to develop a better understanding of their roles in foods, microbiology, nutrition, and medicine. To contribute to this effort, this overview surveys our present knowledge of the chemistry, nutrition, safety, microbiology, and pharmacology of DAAs. Also covered are the origin and distribution of DAAs in food and possible roles of DAAs in human physiology, aging, and the etiology and therapy of human diseases.
Article
A correlation-energy formula due to Colle and Salvetti [Theor. Chim. Acta 37, 329 (1975)], in which the correlation energy density is expressed in terms of the electron density and a Laplacian of the second-order Hartree-Fock density matrix, is restated as a formula involving the density and local kinetic-energy density. On insertion of gradient expansions for the local kinetic-energy density, density-functional formulas for the correlation energy and correlation potential are then obtained. Through numerical calculations on a number of atoms, positive ions, and molecules, of both open- and closed-shell type, it is demonstrated that these formulas, like the original Colle-Salvetti formulas, give correlation energies within a few percent.
Article
In this issue of THE JOURNAL, 2 meta-analyses critically review the coronary heart disease (CHD) risks related to blood levels of homocysteine and a common variant of methylene tetrahydrofolate reductase (MTHFR), a gene that is known to be an important regulator of homocysteine metabolism.1- 2 The authors summarize data on the potential effects of this genetic variant and plasma homocysteine levels on CHD risk and conclude that the risks are increased modestly. While the authors do not recommend new approaches to evaluate persons at risk for CHD, the study findings do provide a perspective on how scientists assess the utility of newer biomarkers and genetic factors that may contribute to CHD risk.
Article
Free neutral D-amino acids have previously been detected in human plasma, usually accounting for less than 2% of the total free amino acid concentration (D-amino acid ratio) [Nagata, Y., Masui, R., Akino, T., 1992a. The presence of free D-serine, D-alanine and D-proline in human plasma. Experientia 48, 986-988. Nagata, Y., Yamamoto, K., Shimojo, T., 1992b. Determination of D- and L-amino acids in mouse kidney by high-performance liquid chromatography. Journal of Chromatography 575, 147-152. Nagata, Y., Yamamoto, K., Shimojo, T., Konno, R., Yasumura, Y., Akino, T., 1992c. The presence of free D-alanine, D-proline and D-serine in mice. Biochimca et Biiophysica Acta 1115, 208-211]. In the present study to search for the source of free D-amino acids, D- and L-enantiomers of the major non-essential amino acids, i.e., the free form of serine, alanine, proline, aspartate and glutamate were analyzed by HPLC in human saliva, submandibular glands and oral epithelial cells. The D-enantiomer ratios to total of free alanine or proline were 35% and 20%, respectively, in saliva. The ratios of the other D-amino acids were less than 11%. The effect of ingested food and oral bacteria on the saliva amino acid levels was suggested to be insignificant. D-Alanine and d-aspartate were also detected in the submandibular gland in ratios up to 5%, and D-alanine and d-proline were found in oral epithelial cells in ratios of 18% and 5%, respectively. The submandibular gland and oral epithelial cells are suggested to be possible sources of the saliva D-alanine and D-aspartate.
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