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Elevational size variation and two new species of torrent frogs from Peninsular Malaysia (Anura: Ranidae: Amolops Cope)

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Previously, only one species of torrent frog (Amolops larutensis) was thought to occur throughout Peninsular Malaysia. However, genomic work has demonstrated that populations from eastern Peninsular Malaysia form two separate lineages that are genetically distinct from A. larutensis that is now restricted to the western half of Peninsular Malaysia. This study demonstrates that all three lineages can be morphologically distinguished from each other, thereby providing additional support for the recognition of the eastern lineages as two distinct species. These lineages are described herein as Amolops gerutu sp. nov. from the eastern states of Kelantan, Terengganu, and Pahang, and A. australis sp. nov. from the southern-most state of Johor. In general, these two new species form a clade that is sister to A. larutensis and can be readily distinguished from it by having: (1) considerably denser and more pronounced dorsal tubercles, and (2) the posterodorsal surface of thighs having dense, dark stippling as opposed to broad vermiculations. Although differences in other morphometric characters were detected, their utility as diagnostic characters should be applied with caution due to the large intraspecific variation that overlaps among different species in many of the characters we measured. As such, we advocate for the use of tuberculation and pattern of the posterodorsal portion of the thighs as primary diagnostic characters. These characters can readily distinguish A. larutensis from the two new species. To differentiate A. australis sp. nov. from A. gerutu sp. nov. and A. larutensis, body size can be a good diagnostic character as A. australis sp. nov. is significantly smaller in both males (mean = 31.04 ± 1.59 mm) and females (mean = 46.48 ± 3.2 mm). Additionally, we show a strong positive correlation between body size and elevation, with populations from montane forests (>900 m asl) being considerably larger than populations at lower elevations.
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Accepted by M. Vences: 26 Apr. 2018; published: 15 Jun. 2018
ZOOTAXA
ISSN 1175-5326 (print edition)
ISSN
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Copyright © 2018 Magnolia Press
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Article
https://doi.org/10.11646/zootaxa.4434.2.2
http://zoobank.org/urn:lsid:zoobank.org:pub:6AD09FAF-DA28-43E0-9546-029E31C6D800
Elevational size variation and two new species of torrent frogs from
Peninsular Malaysia (Anura: Ranidae: Amolops Cope)
CHAN KIN ONN
1,5
, ROBIN KURIAN ABRAHAM
2
, JESSE L. GRISMER
3
& L. LEE GRISMER
4
1
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543.
E-mail: chankinonn@gmail.com
2
Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas 66045, USA.
E-mail: robinabrahamf50@gmail.com
3
Department of Biological Sciences, University of Auburn, Alabama 36849, USA; La Kretz Center for Californian Conservation Sci-
ence, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, California 90095, USA
Email: jlg0067@auburn.edu
4
Herpetology Laboratory, Department of Biology, La Sierra University, 4500 Riverwalk Parkway, Riverside, California 92515, USA.
E-mail: lgrismer@lasierra.edu
5
Corresponding author
Abstract
Previously, only one species of torrent frog (Amolops larutensis) was thought to occur throughout Peninsular Malaysia.
However, genomic work has demonstrated that populations from eastern Peninsular Malaysia form two separate lineages
that are genetically distinct from A. larutensis that is now restricted to the western half of Peninsular Malaysia. This study
demonstrates that all three lineages can be morphologically distinguished from each other, thereby providing additional
support for the recognition of the eastern lineages as two distinct species. These lineages are described herein as Amolops
gerutu sp. nov. from the eastern states of Kelantan, Terengganu, and Pahang, and A. australis sp. nov. from the southern-
most state of Johor. In general, these two new species form a clade that is sister to A. larutensis and can be readily distin-
guished from it by having: (1) considerably denser and more pronounced dorsal tubercles, and (2) the posterodorsal sur-
face of thighs having dense, dark stippling as opposed to broad vermiculations. Although differences in other
morphometric characters were detected, their utility as diagnostic characters should be applied with caution due to the
large intraspecific variation that overlaps among different species in many of the characters we measured. As such, we
advocate for the use of tuberculation and pattern of the posterodorsal portion of the thighs as primary diagnostic charac-
ters. These characters can readily distinguish A. larutensis from the two new species. To differentiate A. australis sp. nov.
from A. gerutu sp. nov. and A. larutensis, body size can be a good diagnostic character as A. australis sp. nov. is signifi-
cantly smaller in both males (mean = 31.04 ± 1.59 mm) and females (mean = 46.48 ± 3.2 mm). Additionally, we show a
strong positive correlation between body size and elevation, with populations from montane forests (>900 m asl) being
considerably larger than populations at lower elevations.
Key words: Taxonomy, systematics, morphology, amphibian, cryptic species, body size
Introduction
Torrent frogs of the genus Amolops are represented by 53 species and are widely distributed across Asia from
northeastern India, southern China, and southwards throughout mainland Southeast Asia (Frost 2018). The bulk of
this group’s species diversity lies in the northern part of its distribution (southern China and northern Indochina),
with only one species, A. larutensis (Boulenger) occurring in the southern-most portion of its range in Peninsular
Malaysia (Chan et al. 2010). However, a comprehensive molecular study of numerous Amolops populations
throughout Peninsular Malaysia revealed hidden diversity within A. larutensis (Chan et al. 2017). Using a suite of
species delimitation and gene flow analyses based on morphology, mitochondrial and genome-wide single
nucleotide polymorphism (SNP) data, this species complex was shown to comprise three independently evolving
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lineages composed of the true A. larutensis and two undescribed species (Fig. 1; Chan et al. 2017). In this study, we
performed additional morphological analyses using data generated from Chan et al. (2017) to substantiate the
recognition of those lineages as distinct species. Due to large variations in body size observed among populations
across different elevational gradients, we also performed statistical analyses to determine whether body size
correlates significantly with elevation.
FIGURE 1. Distribution of sampled populations and an ultrametric maximum-likelihood phylogeny inferred from 1,466 bp of
the 16S rRNA-encoding mitochondrial gene. All major nodes were highly supported with >90% bootstrap. Populations
represented by circles belong to the western clade, triangles represent populations from the eastern clade, and star denotes the
type locality of Amolops larutensis at Bukit Larut, Perak. The red box indicates a contact zone between the eastern and western
clades. This figure is adapted from Chan et al. (2017).
Materials and methods
Morphological data were obtained from 141 vouchered specimens from 20 different localities throughout
Peninsular Malaysia. These localities include the type locality of A. larutensis and other sites from all the major
mountain ranges (Fig. 1). For consistency, we follow the same naming convention as Chan et al. (2017) i.e.
Larutensis (populations from Sungai Sedim and Bukit Hijau, state of Kedah; Bukit Larut and Ulu Kenas, state of
Perak), W1 (Belum-Temenggor, state of Perak), W2 (Cameron Highlands, state of Pahang), W3 (Fraser’s Hill,
state of Pahang), and W4 (Genting Highlands and surrounding lowlands, states of Pahang and Selangor) for
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populations assigned to the western clade; E1 (Gunung Tebu and Lata Tembakah, state of Terengganu; Gunung
Stong, state of Kelantan; Sungai Lembing, state of Pahang) and E2 (Endau-Rompin, state of Johor) for populations
from the eastern clade (Fig. 1). Nine continuous morphological characters were measured following Chan et al.
(2016): snout-vent length (SVL), head length (HL), head width (HW), internarial distance (IND), snout length
(SNL), forearm length (FAL), femur length (FL), tibia length (TBL), and third-finger disc width (3FinDW). Details
on sampling localities and raw morphological measurements can be obtained from Table S1 in Chan et al. (2017).
Due to obvious sexual size dimorphism, adult male and female measurements were analyzed separately and
measurements were adjusted for allometric growth using the following equation: X
adj
=X-β(SVL-SVL
mean
), where
X
adj
=adjusted value; X=measured value; β=unstandardized regression coefficient for each population;
SVL=measured snout-vent length; SVL
mean
=overall average SVL of all samples (Lleonart et al. 2000). Adjusted
variables were then log-transformed prior to downstream analyses. We used principal components analysis (PCA)
to find the best low-dimensional representation of variation in the data to determine whether morphological
variation could form the basis of detectable group structure. Eigenvalues >1 were retained according to Kaiser’s
criterion (Kaiser 1960). The R package “hypervolume” (Blonder et al. 2014) was used to construct hypervolumes
using Gaussian kernel density estimation to estimate the probability density function of the retained principal
components.
An ANOVA was performed to evaluate whether the means of morphological characters differed significantly,
followed by a Tukey HSD test to determine specifically, which pair of character means differed after adjusting for
multiple testing. To examine patterns in body size variation, a Pearson’s correlation test was performed to examine
the relationship between SVL and elevation. Finally, we performed a T-test to determine if populations at montane
forests (>900 m) differ significantly in body size (SVL) from populations at lower elevations (<650 m). These
elevational thresholds were used because 900 m asl is the lowermost level of cloud base in Malaysia where hill
dipterocarp forests transition to montane forests (Symington 1943). All morphological analyses were performed
and visualized in R (R Core Team 2017). All type material are deposited at the La Sierra University Herpetological
Collection (LSUHC), La Sierra University, Riverside, California, USA.
FIGURE 2. Principal components scores of morphological variables visualized as hypervolumes constructed using kernel
density estimation. Geometry of hypervolumes correspond to a minimum convex hull (polytopes) that minimally encloses the
data. Axes show the first three principal components and their proportion of variance.
Results
To provide context, we recapitulate relevant results from Chan et al. (2017) that demonstrated the genetic
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differentiation of the undescribed lineages. Phylogenetically, E1 + E2 formed a clade that is sister to Amolops
larutensis (Fig. 1). The split between A. larutensis and E1 + E2 were 14–16% divergent at the 16S mitochondrial
gene (uncorrected p-distance), while E1 and E2 were 7–8% divergent from each other [Fig. S2 in Chan et al.
(2017)]. Species delimitation methods based on mitochondrial and genome-wide SNPs inferred between 5–7
putative species. However, using a population genomics approach, gene flow was shown to occur among
populations from the western clade (Larutensis, W1, W2, W3, and W4) but populations from the eastern clade (E1
and E2) remained genetically isolated from each other and from any of the western clade populations [Fig. 4 in
Chan et al. (2017)]. Consequently, populations from the western clade were considered a single, cohesive
metapopulation lineage under the name A. larutensis, whereas the two populations from the eastern clade (E1 and
E2) were considered distinct, undescribed lineages.
FIGURE 3. Boxplots representing the log-transformed and body-size corrected morphological characters in males. Clusters
with the same letter code are not significantly different (Tukey HSD test at p<0.05). Blue=E2; purple=E1; orange=Amolops
larutensis.
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FIGURE 4. Boxplots representing the log-transformed and body-size adjusted morphological characters in females. Clusters
with the same letter code are not significantly different (Tukey HSD test at p<0.05). Blue=E2; purple=E1; orange=Amolops
larutensis.
The E2 population is on average smaller than populations of A. larutensis and E1 for both males and females
(Table 1). For the male only dataset, the first three principal components had eigenvalues >1 and accounted for
69.6% of the total variation. The first principal component (PC1) accounted for 39.2% of the variation and was
most heavily loaded on the character TBL (Table 2). Along the PC1 axis, E1 and E2 showed complete separation
with no overlap, whereas E2 and A. larutensis were mostly separated with a slight overlap (Fig. 2). There were no
clear separations along PC2 (18%) and PC3 (12.4%). For the female dataset, the first three principal components
accounted for 82% of the total variation. The E2 population was markedly segregated from E1 and A. larutensis
along PC1 (50.5%), which was most heavily loaded on the characters IND, SNL, and FAL (Table 2). Similarly,
there were no clear separations along PC2 (20.9%) and PC3 (10.5%).
The ANOVA showed that the mean of each morphological character was significantly different except SNL in
males and TBL in females (Table 3). Subsequently, the Tukey HSD test (α = 0.05) revealed that E1 and E2 differed
significantly in all characters except male SNL and female TBL. Between A. larutensis and E1, males did not differ
significantly in SVL, IND, SNL, FAL, and Fin3DW, whereas females showed no significant differences in HW,
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SNL, FAL, and FL. When A. larutensis was compared with E2, males were not significantly different in HL, HW,
SNL, FL, and Fin3DW, whereas females showed no significant differences in TBL (Table 3; Figs. 3, 4). The
Pearson’s correlation test showed a significant positive relationship between SVL and elevation and a student’s t-
test showed that populations from montane forests (>900 m asl) were significantly larger than populations from
lower elevations (<650 m asl) (Fig. 5).
FIGURE 5. Top: scatterplots of snout-vent length (SVL) vs. elevation with the corresponding regression line and 95%
confidence interval shaded in gray. Inset values represent the correlation coefficient (R) and p-value for the Pearson’s
correlation test. Bottom: boxplots of SVL vs. elevation binned into high (>900 m) and low (<650 m) elevation categories.
Blue=E2; purple=E1; orange=Amolops larutensis.
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In concert with results from Chan et al. (2017), this study demonstrates that A. larutensis, E1, and E2 are not
only genetically distinct but can also be morphologically distinguished from each other. These lines of evidence
provide sufficient support for the recognition of E1 and E2 as separate species that we describe below.
TABLE 1. Summary of morphometric measurements for males and females of Amolops larutensis, A. gerutu sp. nov.,
and A. australis sp. nov.
Systematics
Amolops gerutu sp. nov.
Tuberculated Torrent Frog
Figs. 6, 7B, D
Amolops larutensis, Sumarli, Grismer, Anuar, Muin & Quah, 2015, pp 4,9,12.
Holotype. LSUHC 11178, adult female, collected 2 September 2012 by Lee Grismer, Chan Kin Onn, Alexandra
Sumarli, Evan Quah, Mohd. Abdul Muin, Shahrul Anuar, Ariel Loredo, and Anthony Cobos from Gunung Tebu,
Terengganu, Malaysia (05°35′35.47″ N, 102°36′45.63″ E; 1039 m asl).
Paratopotypes. LSUHC 11179, adult male and 11176–77, 11187–88, adult females bear the same collection
data as the holotype.
Description of holotype (Fig. 6). Adult female; habitus moderately robust; head slightly longer than wide;
snout sharply angular, obtusely pointed in dorsal profile, slightly projecting beyond lower jaw in lateral profile;
nostrils located laterally, closer to tip of snout than to eye; canthus rostralis sharp, constricted anteriorly; lores
vertical, distinctly concave; eye diameter less than snout length; pineal body visible, located level to the anterior
margin of orbits; tympanum distinct, tympanic rim slightly elevated; vomerine teeth well-developed, on two
oblique, oval ridges almost contacting each other; tongue cordiform.
Forelimbs moderately robust; relative length of fingers, II=IV<I<III; fingers without web; tips of fingers
expanded into large discs bearing circummarginal and transverse dorsal and ventral grooves, discs of third and
fourth fingers distinctly larger than discs of first and second fingers; fringe of skin along lateral edges of all fingers;
subarticular tubercles slightly raised, proximal subarticular tubercle on fourth finger oval, others round; inner
metacarpal tubercle elongate, medial and outer metacarpal tubercle oval, in contact, outer slightly smaller than
Male Female
A. larutensis
n=43
A. gerutu
n=7
A. australis
n=8
A. larutensis
n=32
A. gerutu
n=29
A. australis
n=6
SVL 31.5–40.4
(35.95 ± 2.2)
34–37.2
(35.67 ± 1.25)
28.7–32.7
(31.04 ± 1.59)
46.4–66
(57.62 ± 4.86)
45–58.2
(53.27 ± 0.47)
45.8–47
(46.48 ± 3.2)
HL 11.77–15.1
(13.45 ± 0.85)
13.2–14.2
(13.77 ± 0.34)
11.5–12.6
(12.16 ± 0.38)
17.3–25
(21.38 ± 1.87)
17.2–21.4
(19.57 ± 0.51)
16.5–17.9
(17.15 ± 1.08)
HW 10.7–13.7
(12.1 ± 0.81)
11.9–12.8
(12.43 ± 0.3)
10.1–11.3
(10.76 ± 0.44)
16.2–24.4
(19.78 ± 2.03)
16.6–20.3
(18.17 ± 0.33)
15.3–16.2
(15.65 ± 0.99)
IND 3.3–4.5
(3.97 ± 0.29)
3.8–4.1
(3.93 ± 0.11)
3.3–3.8
(3.54 ± 0.14)
5–7.1
(5.92 ± 0.54)
4.9–6.4
(5.7 ± 0.2)
4.8–5.3
(5 ± 0.36)
SNL 5–6.3
(5.59 ± 0.33)
5.3–6.1
(5.63 ± 0.28)
4.8–5.5
(5.14 ± 0.22)
7.2–10
(8.74 ± 0.68)
7.3–9.1
(8.21 ± 0.32)
7.0–7.8
(7.37 ± 0.41)
FAL 7.3–10.9
(8.94 ± 0.88)
7.9–9.3
(8.86 ± 0.49)
6.4–7.1
(6.81 ± 0.29)
10.5–15.7
(13.17 ± 1.35)
10.7–13.1
(12.04 ± 0.63)
8.6–10.3
(9.55 ± 0.72)
FL 17.7–23.3
(20.31 ± 1.47)
20.3–22.3
(20.9 ± 0.73)
15.4–19.5
(17.53 ± 1.18)
26.1–37.7
(31.47 ± 2.96)
27.1–33
(29.6 ± 1.09)
22.9–25.6
(24.33 ± 1.39)
TBL 19–24.1
(21.3 ± 1.44)
20.7–23
(21.99 ± 0.91)
17.3–19.5
(18.11 ± 0.82)
26.5–38.6
(33.08 ± 3.01)
28.6–34.4
(31.62 ± 0.9)
25–27.2
(25.87 ± 1.41)
Fin3DW 1.7–2.6
(2.11 ± 0.23)
1.9–2.5
(2.26 ± 0.19)
1.7–2.1
(1.81 ± 0.14)
2.6–4.2
(3.42 ± 0.35)
3.1–4.1
(3.48 ± 0.25)
2.6–3.3
(2.9 ± 0.24)
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medial; one supernumerary tubercle posterior to proximal subarticular tubercle on second, third and fourth fingers,
that on second finger barely visible.
FIGURE 6. Holotype (LSUHC 11178) of Amolops gerutu from Gunung Tebu, Terengganu.
Hind limbs robust; tips of toes expanded into round discs bearing circummarginal and transverse dorsal and
ventral grooves, width of fourth toe disc less than width of third finger disc; toes fully webbed; wide, movable flap
of skin on inner side of first toe and a narrower flap of skin on outer side of fifth toe from the level of the proximal
subarticular tubercle to toe disc; subarticular tubercles distinct, oval; inner metatarsal tubercle elongate, outer
round, approximately one third size of inner.
Skin on dorsum and dorsal surfaces of forelimbs densely covered with irregularly-sized, raised tubercles;
tubercles on dorsolateral region slightly enlarged, elongated, ridge-like; tubercles on flanks larger than those on
dorsum; tubercles on dorsal surfaces of hind limbs sparser; supratympanic fold absent; skin on gular region and chest
smooth, belly slightly granular; anterior half of ventral surface of thigh smooth, posterior half granular; large pectoral
glands present.
Measurements of holotype (mm): SVL=58.2; HL=21.4; HW=20.2; IND=6.2; SNL=9.1; FAL=13; FL=31.3;
TBL=33.6; Fin3DW=3.8. Additional measurements: horizontal diameter of orbit=6.6; interorbital distance=5.3;
largest diameter of tympanum=2.6; distance between anterior margin of tympanum and posterior margin of orbit=2.7
Diagnosis. Amolops gerutu sp. nov. is placed in the genus Amolops based on its overall morphological
similarity with A. larutensis and phylogenetic placement as its sister lineage (Chan et al. 2017). It can be
distinguished from other congeners by the following combination of characters: adult females large (SVL 45.0–
58.2 mm), males moderate in size (SVL 34.0–37.2 mm); dorsum densely covered with irregularly-sized, raised
tubercles; tubercles on dorsolateral region slightly enlarged, elongated, ridge-like; tubercles on flanks larger than
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those on dorsum; tubercles on dorsal surfaces of hind limbs sparser; posterodorsal surface of thighs with dense,
dark stippling.
FIGURE 7. Top row: (A) female Amolops larutensis from Fraser’s Hill, Pahang; (B) female A. gerutu from Chemerong,
Pahang; Middle row: (C) male A. larutensis from Fraser’s Hill; (D) male A. gerutu from Sekayu, Terengganu; Bottom row: (E)
color-pattern comparisons of the posterodorsal portion of the thigh that diffentiates A. larutensis from (F) A. gerutu and (G) A.
australis.
Coloration in preservative. Dorsum dark-brown, overlain with irregular light-gray patches; flanks yellowish
white with dark-brown blotches; lips yellowish white, mottled with dark-brown; dorsal surface of fore and hind
limbs light-brown with distinct, wide, dark-brown crossbars; dorsal surface of third and fourth fingers brown with
dark-brown crossbars, second finger yellowish white, mottled with dark-brown, first finger yellowish white with
minute brown speckling; posterodorsal surface of thighs with dense, dark stippling; toe webbing light-brown with
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fine, dense, dark-brown veins; venter yellowish white; ventral surface of hands speckled with dark-brown; dark-
brown stripe on outer side of forearm; gular with irregular, dark-brown streaks; anterior half of ventral surface of
thighs orange, posterior half dark-brown with light-colored spots; ventral surface of feet and outer half of tarsus
dark-brown; pectoral glands orangish.
Va ri at io n . Males differ from females in being smaller; having paired vocal sacs; distinct nuptial pads on base
of first finger; lacking humeral glands; and having indistinct pectoral glands.
Comparisons. Because the new species forms a clade with A. larutensis and is substantially distant genetically
from all other congeners, we restrict our comparisons to A. larutensis and the other undescribed species. Amolops
gerutu sp. nov. differs from A. larutensis by having denser and more pronounced dorsal tubercles and
posterodorsal side of thighs having dense, dark stippling as opposed to vermiculations (Fig. 7E, F). After correcting
for body size, males of A. gerutu sp. nov. have larger heads (HL and HW) and longer hind limbs (FL and TBL; Fig.
3), whereas females have smaller SVL, HL, and larger IND, TBL, and Fin3DW (Table 3; Fig. 4). See the
Discussion section for the use of continuous morphological characters to diagnose this species.
TABLE 2 . Summary of PCA results for male and female morphological datasets. SD = standard deviation, prop. var =
proportion of variation; cum. var = cumulative variance, EV = eigenvalues. Other abbreviations relate to morphological
characters that are defined in materials and methods.
Distribution. Besides the type locality, Amolops gerutu sp. nov. has been documented from a number of other
Male PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9
SD 1.88 1.27 1.06 0.90 0.76 0.70 0.67 0.52 0.38
Prop. var 0.39 0.18 0.12 0.09 0.06 0.05 0.05 0.03 0.02
Cum. var 0.39 0.57 0.70 0.79 0.85 0.90 0.95 0.98 1.00
EV 3.53 1.62 1.11 0.81 0.58 0.48 0.45 0.27 0.14
SVL -0.25 0.37 -0.52 0.12 -0.03 0.72 -0.05 -0.01 -0.05
HL -0.37 -0.24 0.11 0.27 -0.47 0.06 0.68 -0.15 -0.04
HW -0.33 -0.44 0.07 -0.12 0.53 0.24 0.17 0.50 0.24
IND -0.31 0.32 0.05 0.52 0.58 -0.30 0.10 -0.30 -0.04
SNL -0.27 -0.43 -0.14 0.52 -0.25 -0.11 -0.61 0.11 0.01
FAL -0.36 0.33 -0.29 -0.19 -0.18 -0.49 0.08 0.55 -0.23
FL -0.36 0.08 0.60 -0.20 -0.01 0.24 -0.25 -0.03 -0.59
TBL -0.43 0.26 0.23 -0.27 -0.20 -0.05 -0.21 -0.19 0.71
Fin3DW -0.28 -0.37 -0.44 -0.47 0.14 -0.16 -0.04 -0.53 -0.19
Female
SD 2.13 1.37 0.97 0.77 0.54 0.53 0.43 0.42 0.31
Prop. var 0.51 0.21 0.11 0.07 0.03 0.03 0.02 0.02 0.01
Cum. var 0.51 0.71 0.82 0.89 0.92 0.95 0.97 0.99 1.00
EV 4.55 1.88 0.95 0.60 0.29 0.28 0.18 0.18 0.09
SVL -0.27 -0.04 -0.66 0.61 -0.26 0.20 -0.05 0.09 0.03
HL 0.32 -0.25 -0.50 -0.36 -0.30 -0.47 0.28 -0.12 -0.23
HW -0.16 -0.56 -0.32 -0.34 0.54 0.22 -0.11 0.16 0.23
IND 0.42 -0.08 0.08 0.02 -0.11 0.48 0.41 0.61 -0.18
SNL 0.45 0.05 -0.05 0.00 -0.23 0.00 -0.11 -0.02 0.85
FAL 0.43 0.06 -0.12 0.01 0.05 -0.01 -0.81 0.19 -0.32
FL 0.38 -0.28 0.05 0.23 0.12 0.41 0.08 -0.71 -0.16
TBL 0.09 -0.58 0.32 0.52 0.08 -0.49 0.01 0.20 0.03
Fin3DW -0.28 -0.44 0.27 -0.25 -0.68 0.25 -0.27 -0.04 -0.03
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localities east of the Titiwangsa mountain range including Gunung Stong Forest Reserve, in the state of Kelantan;
Lata Tembakah, Lata Belatan, and Sekayu Recreational Forest in the state of Terengganu (Dring 1979; Sumarli et
al. 2015); and Sungai Lembing, Sungai Pandan Waterfall, and Chemerong Amenity Forest in the state of Pahang.
At Gunung Stong, A. gerutu sp. nov. occurs in syntopy with A. larutensis (Fig. 1).
Natural history. Like most congeners, Amolops gerutu sp. nov. is a strict torrent specialist that only occurs
within or along torrential zones of rocky streams from lowland to montane forests. During the day, frogs dwell in
rock cracks and sheltered areas among boulder stacks along streams and are rarely seen out in the open. They can
be seen in abundance at night, most frequently on boulders by splash zones and occasionally on adjacent low
vegetation. When disturbed, frogs dive into the rapids and float downstream. Like other congeners, tadpoles of this
species are gastromyzophorous (Pham et al. 2015) and can be seen clinging onto boulders in the splash zone. On
such boulders, tadpoles are usually observed above or just below the water line.
Etymology. The specific epithet “gerutu” (English pronunciation “gir-roo-too”) refers to the Malay word of
the same construct, meaning “tubercle”, in reference to the pronounced dorsal tubercles that are diagnostic of this
species.
Amolops australis sp. nov.
Southern Torrent Frog
Fig. 8
Amolops larutensis, Ahmad, Senawi & Lim 2004, p 26; Belabut & Hashim, 2005, p 200; Wood, Grismer, Youmans, Nasir,
Ahmad & Senawi, 2008, p 118; Grismer & Pan, 2008, p. 277 (in part); Shahriza, Ibrahim, Anuar & Muin, 2012, p 558,
561.
Staurois larutensis, Belabut & Hashim, 2004, pp. 67, 69.
Holotype. LSUHC 7665, adult female, collected on 27 August 2005 by L. Grismer, P. L. Wood, J. L. Grismer, T.
M. Youmans, N. Nasir, J. Senawi, and N. Ahmad from Peta, Endau-Rompin National Park (2°26'20.09" N,
103°16'22.29"; 103 m asl).
Paratypes. LSUHC 7672–73, 7686, 8097–8101, adult males, and 7671, 7684, 7687, 8096, adult females, with
the same collection data as the holotype.
Description of holotype (Fig. 8). Adult female; habitus robust; head slightly wider than long; snout sharply
angular, obtusely acuminate in dorsal profile, projecting significantly beyond lower jaw in lateral profile; nostrils
located laterally, closer to tip of snout than to eye; canthus rostralis sharp, constricted anteriorly; lores vertical,
concave; eye diameter lesser than snout length; pineal body visible, located level to the anterior margin of orbits;
tympanum distinct, tympanic rim slightly elevated; vomerine teeth well developed, on two oblique, oval ridges
almost contacting each other; tongue cordiform.
Forelimbs moderately robust; relative length of fingers, II<I<IV<III; fingers without webbing; tips of all
fingers expanded into large discs bearing circummarginal and transverse dorsal and ventral grooves, discs of third
and fourth fingers distinctly larger than discs of first and second fingers; fringe of skin along lateral edges of all
fingers; subarticular tubercles slightly raised, rounded; inner metacarpal tubercle elongate, medial and outer
metacarpal tubercle oval, in contact, outer slightly smaller than medial; one supernumerary tubercle posterior to
proximal subarticular tubercle on second, third and fourth fingers, that on second finger barely visible.
Hind limbs robust; tips of all toes expanded into round discs bearing circummarginal and transverse dorsal and
ventral grooves, width of fourth toe disc less than width of third finger disc; full web on all toes; wide, movable
flap of skin on preaxial side of first toe and a narrower flap of skin on postaxial side of fifth toe from the level of the
proximal subarticular tubercle to toe disc; subarticular tubercles distinct, oval; inner metatarsal tubercle very
elongate, outer round, approximately one third size of inner.
Skin on dorsum and dorsal surfaces of forelimbs densely covered with mostly circular but also a few
irregularly-sized, raised tubercles; tubercles on dorsolateral region slightly enlarged, elongated, ridge-like;
tubercles on flanks larger than those on dorsum; tubercles almost absent on dorsal surfaces of hind limbs;
supratympanic fold absent; skin on gular and chest smooth, belly slightly granular; anterior half of ventral surface
of thigh smooth, posterior half granular.
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FIGURE 8. Holotype (LSUHC 7665) of Amolops australis from Endau-Rompin (Peta), Pahang.
Measurements of holotype (mm): SVL=46.3; HL=16.5; HW=15.8; IND=4.8; SNL=7.4; FAL=9.8; FL=25.6;
TBL=26.7; Fin3DW=3.0. Additional measurements: horizontal diameter of orbit=6.4; interorbital distance=4.0;
largest diameter of tympanum=2.0; distance between anterior margin of tympanum and posterior margin of
orbit=1.9
Diagnosis. Amolops australis sp. nov. is placed in the genus Amolops based on its overall morphological
similarity with A. gerutu sp. nov. and phylogenetic placement as its sister lineage (Fig. 1). It can be distinguished
from other congeners by the following combination of characters: adult females moderate in size (SVL 45.8–47.0
mm), males smaller (SVL 28.7–32.7 mm); skin on dorsum and dorsal surfaces of forelimbs densely covered with
mostly circular but also a few irregularly-sized, raised tubercles; tubercles on dorsolateral region slightly enlarged,
elongated, ridge-like; tubercles on flanks larger than those on dorsum; tubercles almost absent on dorsal surfaces of
hind limbs; posterodorsal surface of thighs with dense, dark stippling.
Coloration in preservative. Dorsum light-gray, interspersed with irregular dark-brown spots and blotches;
flanks faded white with small brown blotches; lips off-white; dorsal surface of fore and hind limbs light-gray with
distinct, wide, dark-brown crossbars; dorsal surface of third and fourth fingers brown with dark-brown crossbars,
second finger white, mottled with dark-brown, first finger white with minute brown speckling; posterodorsal
surface of thighs with dense, dark stippling; toe webbing light-brown with fine, dense, dark-brown veins; venter
orangish white; ventral surface of hands speckled with dark-brown; dark-brown stripe on outer side of forearm;
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gular region with irregular, dark-brown streaks; anterior half of ventral surface of thighs pale and faded-orange,
posterior half dark-brown with light spots; ventral surface of feet and outer half of tarsus dark-brown; pectoral
glands orangish white.
TABLE 3. Results of the ANOVA on overall mean differences and post-hoc Tukey HSD test to compare all possible
pairs of means. P-values of males and females are separated by a forward slash.
Va ri at io n . Males differ from females in being smaller; having paired vocal sacs; distinct nuptial pads on base
of first finger; lacking humeral glands; and having indistinct pectoral glands.
Comparisons. Because the new species forms a clade with A. larutensis and is substantially distant from all
other congeners, we restrict our comparisons to A. larutensis and the other undescribed species. Amolops australis
sp. nov. differs from A. larutensis by having denser and more pronounced dorsal tubercles and posterodorsal side
of thighs with dense, dark stippling as opposed to vermiculations (Fig. 7E, G). Males and females of A. australis
sp. nov. are noticeably smaller in comparison to A. larutensis and A. gerutu sp. nov. (Table 1; Figs. 3, 4).
Specifically, males of A. australis sp. nov. have smaller SVL, IND, FAL, and TBL when compared with those of A.
larutensis and smaller SVL, HL, HW, IND, FAL, FL, TBL, and 3FinDW compared to A. gerutu sp. nov. (Table 2;
Fig. 3). For females, A. australis sp. nov. have smaller SVL, HW, and 3FinDW, but larger HL, IND, SNL, FAL,
and FL when compared with A. larutensis and A. gerutu sp. nov. (Table 3; Fig. 4). See the Discussion section for
the use of continuous morphological characters to diagnose this species.
Distribution. Amolops australis sp. nov. is only known from the southern state of Johor where it has been
confirmed to occur in Endau-Rompin National Park and Bantang River Amenity Forest. It is presumed to occur
more widely in suitable habitats in the surrounding southern region of Peninsular Malaysia.
Natural history. The natural history of this species is similar to that of Amolops gerutu sp. nov. and A.
larutensis. No information is available for tadpoles.
Etymology. The specific epithet is derived from the Latin word “australis”, meaning “southern” in English,
and is applied in reference to the distribution of this species in southern Peninsular Malaysia that also represents the
southern-most distributional limit of the entire genus.
Discussion
Although significant interspecies differences were detected in numerous continuous morphological characters,
their utility as diagnostic characters should be applied with caution. This is due to the large intraspecific variation
that overlaps among different species in many of the characters we measured, especially for Amolops larutensis
and A. gerutu sp. nov. As such, we advocate for the use of tuberculation and pattern of the posterodorsal portion of
the thighs as primary diagnostic characters (Fig. 6). These characters are effective at distinguishing A. larutensis
from the two new species. To differentiate A. australis sp. nov. from A. gerutu sp. nov. and A. larutensis, body size
can be a good diagnostic character as A. australis sp. nov. is significantly smaller in both males (mean = 31.04 ±
1.59) and females (mean = 46.48 ± 3.2; Table 1).
p-value (ANOVA) Adjusted p-value (Tukey test)
A. gerutu vs. A. australis A. larutensis vs. A. gerutu A. larutensis vs. A. australis
SVL 0.000 / 0.000 0.000 / 0.000 0.961 / 0.000 0.000 / 0.000
HL 0.001 / 0.000 0.001 / 0.00.0 0.005 / 0.039 0.256 / 0.000
HW 0.003 / 0.000 0.014 / 0.000 0.002 / 0.685 0.986 / 0.000
IND 0.000 / 0.000 0.001 / 0.000 0.961 / 0.028 0.000 / 0.000
SNL 0.363 / 0.000 0.329 / 0.000 0.590 / 0.942 0.647 / 0.000
FAL 0.000 / 0.000 0.000 / 0.000 0.807 / 0.447 0.000 / 0.000
FL 0.003 / 0.000 0.006 / 0.000 0.005 / 0.832 0.679 / 0.000
TBL 0.000 / 0.062 0.000 / 0.681 0.002 / 0.049 0.000 / 0.852
Fin3DW 0.008 / 0.000 0.006 / 0.000 0.068 / 0.000 0.136 / 0.000
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Our results also showed a strong positive correlation between body size and elevation with high elevation
populations (>900 m) being considerably larger than populations from lower elevations (<650 m). This pattern is
best exemplified in A. larutensis from Fraser’s Hill, Cameron Highlands, and Genting Highlands where
populations from both low and high elevations were sampled. At Fraser’s Hill, males and females averaged 33.9
(N=9) and 47.5 mm (N=2) respectively at 270 m asl (Sungai Chiling) vs. 38.5 (N=6) and 62.0 mm (N=8) at 1000 m
asl (Jeriau Falls). At Cameron Highlands, males averaged 35.4 mm (N=2) at 440 m asl (Lata Iskandar) as opposed
to 39.5 mm (N=3) at 1400 m asl (Robinson Falls), whereas at Genting Highlands, the average size of males and
females was 36.5 (N=6) and 53.6 mm (N=5) respectively at 265 m asl (Ulu Gombak, Sungai Sendat, Ulu Yam) vs.
38.8 mm (N=3) and 60.5 mm (N=4) at 980 m asl (Gotong Jaya). These results are interesting in that low and high
elevation populations were shown to exchange genes freely (Chan et al. 2017), indicating that elevational
differences in body size could be purely driven by epigenetic responses to variations in climatic regimes as
opposed to genetic makeup. However, larger sample sizes from more localities are needed to ascertain conclusively
if this trend has ecological underpinnings as opposed to being an artifact of inadequate sampling.
The east-west boundary that divides Amolops larutensis from A. gerutu sp. nov. and A. australis sp. nov.
corresponds to the lowland regions east of the Titiwangsa Range. This east-west divide has also been documented
in other vertebrate fauna (e.g. Grismer et al. 2008, 2013, 2014; Wood et al. 2008; Chan et al. 2014; Davis et al.
2016), indicating that the Titiwangsa Range serves as a biogeographic barrier that played an important role in the
diversification of multiple unrelated taxa. At Gunung Stong on the northeastern margin of the Titiwangsa Range, A.
larutensis and A. gerutu sp. nov. occur in syntopy and one hybrid individual has been documented (Chan et al.
2017). However, the low occurrence of hybrids, lack of gene flow among all other individuals and populations of
both species, coupled with the high degree of genetic divergence, suggests that these species maintain reproductive
isolation, and that infrequent hybridization events do not affect the integrity of species boundaries. The occurrence
of A. gerutu sp. nov. on Gunung Stong is the only documented locality of this species on the Titiwangsa range and
alludes to the possibility of other contact zones along areas where the habitat of these two species are contiguous or
occur in proximity.
Amolops larutensis sensu lato has also been documented from extreme southern Thailand (Chan-ard 2003) and
based on the configuration of the Bintang and Titiwangsa mountain ranges that extend into southern Thailand,
populations from this region most likely belong to A. larutensis sensu stricto. However, due to the proximity of
Gunung Stong to the Thai border, it is possible that the distribution range of A. gerutu sp. nov. also extends into
extreme southeastern Thailand and that some if not all populations in that region may belong to that species.
Acknowledgements
We thank Evan Quah, Alex Sumarli, Mohd. Abdul Muin, Shahrul Anuar, Ariel Loredo, and Anthony Cobos for
field assistance; Kelvin Lim from the Lee Kong Chian Museum of Natural History for specimen loans; and Luke
Welton from the University of Kansas Biodiversity Institute for photographic and curatorial assistance.
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... The Lao torrent frog Amolops cremnobatus Inger & Kottelat, 1998 was originally described from north-central Laos near the Vietnam border (Inger and Kottelat 1998) and has since been reported to occur across much of northern Laos and flanking regions of Vietnam and Thailand (Orlov et al. 2002;Stuart 2005;Nguyen et al. 2009;Pham et al. 2015;Pham et al. 2016;Wu et al. 2020;Pham et al. 2022). The species is a geographically disjunct member of the A. larutensis group Jiang et al. 2021), equivalent to the subgenus Amo (Dubois 1992), with A. larutensis Boulenger, 1899, A. australis Chan, Abraham, Grismer &Grismer, 2018, andA. gerutu Chan, Abraham, Grismer &Grismer, 2018, all of which occur south of the Isthmus of Kra in extreme southern Thailand and Peninsular Malaysia (Chan-ard 2003;Chan et al. 2018;Niyomwan et al. 2019). ...
... The Lao torrent frog Amolops cremnobatus Inger & Kottelat, 1998 was originally described from north-central Laos near the Vietnam border (Inger and Kottelat 1998) and has since been reported to occur across much of northern Laos and flanking regions of Vietnam and Thailand (Orlov et al. 2002;Stuart 2005;Nguyen et al. 2009;Pham et al. 2015;Pham et al. 2016;Wu et al. 2020;Pham et al. 2022). The species is a geographically disjunct member of the A. larutensis group Jiang et al. 2021), equivalent to the subgenus Amo (Dubois 1992), with A. larutensis Boulenger, 1899, A. australis Chan, Abraham, Grismer &Grismer, 2018, andA. gerutu Chan, Abraham, Grismer &Grismer, 2018, all of which occur south of the Isthmus of Kra in extreme southern Thailand and Peninsular Malaysia (Chan-ard 2003;Chan et al. 2018;Niyomwan et al. 2019). ...
... The species is a geographically disjunct member of the A. larutensis group Jiang et al. 2021), equivalent to the subgenus Amo (Dubois 1992), with A. larutensis Boulenger, 1899, A. australis Chan, Abraham, Grismer &Grismer, 2018, andA. gerutu Chan, Abraham, Grismer &Grismer, 2018, all of which occur south of the Isthmus of Kra in extreme southern Thailand and Peninsular Malaysia (Chan-ard 2003;Chan et al. 2018;Niyomwan et al. 2019). Amolops larutensis was recently partitioned into A. larutensis, A. australis, and A. gerutu based on corroborated lines of evidence in mitochondrial DNA, genomic DNA, and morphology (Chan et al. 2017(Chan et al. , 2018. ...
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The Lao torrent frog Amolops cremnobatus Inger & Kottelat, 1998 was recently hypothesized, based on mitochondrial DNA, to consist of more than a single species across its range in Laos and flanking regions of Vietnam and Thailand. We tested this hypothesis using mitochondrial DNA, nuclear DNA, and quantitative and qualitative morphological data from adults and larvae. We found corroborating lines of evidence for five distinct evolutionary lineages that we hypothesize to be species. Amolops cremnobatus sensu stricto is restricted to the southeastern portion of its previous range, and remaining populations are described as four new species. Some of the new species are easier to diagnose with morphology as larvae than as adults. Further sampling in northern Thailand may reveal an additional species of this torrent frog complex.
... The cascade frogs of genus Amolops Cope, 1865 [1] inhabit rocky streams or waterfalls, enabled by abdominal suckers in larvae and enlarged digital discs in adults [2], and are widely distributed from Nepal and northern India eastwards to China and southwards to Malaysia [3]. The species diversity in Amolops has been poorly understood owing to morphological conservation [4,5], and efforts relying on molecular data during the last decade have greatly improved our understanding of the taxonomy and species diversity of this genus, with a high number of new species having been discovered (e.g., [3,4,[6][7][8][9][10][11][12][13]). So far, as the most speciose genus within the family Ranidae, the genus Amolops contains 79 species [14], which can be allocated 10 species groups [11]. ...
... The A. larutensis group contains four species, namely A. australis Chan, Abraham, Grismer, and Grismer, 2018 [8], A. cremnobatus Inger and Kottelat, 1998 [44], A. gerutu Chan, Abraham, Grismer, and Grismer, 2018 [8], and A. larutensis [87]. The new species can be distinguished from these species by vomerine teeth absent (vs. ...
... The A. larutensis group contains four species, namely A. australis Chan, Abraham, Grismer, and Grismer, 2018 [8], A. cremnobatus Inger and Kottelat, 1998 [44], A. gerutu Chan, Abraham, Grismer, and Grismer, 2018 [8], and A. larutensis [87]. The new species can be distinguished from these species by vomerine teeth absent (vs. ...
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A new species of the genus Amolops , Amolops ailao sp. nov., is described from central Yunnan, China. The new species belongs to the A. mantzorum species group. Phylogenetic analyses based on the combination of mitochondrial 16S rRNA, COI, and cytb genes revealed that the new species is the sister taxon to Amolops ottorum with strong support. Genetically, the new species differs from A. ottorum by 5.0% in cytb sequences. Morphologically, the new species can be distinguished from known congeners by the combination of the following characters: true dorsolateral folds absent, but dorsolateral folds formed by series of glands present; circummarginal groove on tip of first finger absent; body size small (males SVL 33.0–35.1 mm and female SVL 41.3 mm); HW/SVL 0.32‒0.35; UEW/SVL 0.08‒0.10; THL/SVL 0.52‒0.56; vomerine teeth absent; interorbital distance narrower than internarial distance; tympanum distinct, less than half eye diameter; supratympanic fold present, indistinct; a pair of large tubercles on sides of cloaca; tibiotarsal articulation reaching beyond anterior corner of eye; and vocal sac absent. The cladogenesis events within the A. mantzorum group rapidly occurred from Pliocene 4.23 Mya to Pleistocene 1.2 Mya, coinciding with the recent intensive uplift of the Qinghai-Tibetan Plateau since the Pliocene. Combining findings in this study with the most recent taxonomic progress, we consider that there are 20 known Amolops species in Yunnan, China, accounting for the highest proportion of amphibian diversity of Yunnan, and five of them belong to the A. mantzorum group. Among different subfauna and water systems in Yunnan, the species diversity of Amolops in northwestern Yunnan and Nu River Basin is highest.
... Additional information of species from SLF was obtained from the compilation of amphibian checklists conducted by previous undergraduate fieldwork from 2003, 2004, 2006, 2013, 2014 and early 2015. Voucher specimens collected from previous and more recent fieldwork were examined to confirm species identifications based on Berry (1975), Brown and Guttman (2002), Harvey et al. (2002), Wood et al. (2008b), Matsui (2006), McLeod and Norhayati (2007), Nishikawa et al. (2012), Chan et al. (2014aChan et al. ( , b, 2016Chan et al. ( , 2018Chan et al. ( , 2020a, Rujirawan et al. (2013), Sumarli et al. (2015), Zug (2015), Matsui et al. (2014Matsui et al. ( , 2017Matsui et al. ( , 2018, Sheridan and Stuart (2018), Davis et al. (2018), Garg et al. (2019), Jiang et al. (2019), andHong et al. (2021). The latest taxonomic nomenclatural follows the Amphibian Species of the World online database (Frost 2022). ...
... asplenius, Ansonia lumut, Leptophryne borbonica, Limnonectes plicatellus, L. hascheanus, L. utara, Occidozyga sumatrana, O. martensii, Kalophrynus palmatissimus, Micryletta dissimulans, Pulchrana laterimaculata, Polypedates colletti, and Theloderma licin. Species nomenclature was updated based on the latest taxonomy, such as Kaloula latidisca (formerly reported as Kaloula baleata) (Chan et al. 2014b), Amolops gerutu (formerly known as A. larutensis) (Chan et al. 2018), Sylvirana malayana (formerly known as H. nigrovittata) (Sheridan and Stuart 2018), Kurixalus chaseni (formerly known as K. appendiculatus) (Matsui et al. 2018), Limnonectes deinodon (formerly known as L. laticeps and L. khasianus) (Dehling 2014), Pulchrana sundabarat (formerly known as H. picturata) (Chan et al. 2020c), Zhangixalus prominanus and Z. tunkui (formerly known as Rhacophorus prominanus and R. tunkui) and Rentapia flavomaculata (formerly known as R. hosii) (Chan et al. 2016;Chan et al. 2020a) were recorded in SLF as well. ...
... Identification. Morphological characters of the specimens agreed well with the description by Chan et al. (2018). Size (SVL: 30-38 mm, n = 11 males; 48-53 mm, n = 2 females); dorsum densely covered with irregular sized tubercles; dorsolateral region with slightly enlarged, elongated and ridge-like tubercles; dorsal surfaces of hind limb covered with denser and more pronounce tubercles; indistinct pectoral gland with pale yellowish patches. ...
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Amphibians of Sekayu lowland forest have been studied more than a decade, with discoveries of new records of species showing no sign of abating between the years 2003 to 2020, indicating the remarkably rich diversity of anurans in this forest. Despite ceaseless anthropogenic activities in this area, this study successfully recorded 52 species of amphibians from 32 genera in the lowland forest of Sekayu. The species composition consisted of a single species from the family Ichthyophiidae and 51 species of anurans of 31 genera and six families. The number of species recorded has steadily increased especially during more recent surveys from 2015 to 2020. This study augments the total number of amphibian species recorded from Hulu Terengganu by ten additional species, increasing the total to 70 species for the district.
... This study is in coherent with Cheng et al (2019) which detected three distinct populations of P. tener in Malaysia, one each from east and west coast of Peninsular Malaysia as well as Borneo. There were also numerous other studies showing similar geographic separations in other taxa (Yusof et al, 2016;Ith et al, 2016;Chan, Abraham, Grismer, & Grismer, 2018). ...
Article
The synchronous-flashing firefly, Pteroptyx tener Olivier, 1907 is a congregating firefly with high economic value for the ecotourism industry. However, the populations of P. tener are increasingly being threatened due to habitat destruction. The assessment of genetic variation within and among populations of the species from Malaysia might play a major role in conservation and management programs. Objectives of this study were to investigate the relationships among P. tener from five populations in Malaysia (Peninsular Malaysia and Borneo (Sabah) using cytochrome oxidase subunit I (COI), and to obtain its haplotype information. A total of 50 sequences of P. tener were used in the Neighbour-Joining (NJ), Maximum Parsimony (MP), and Bayesian Inference (BI) phylogenetic analyses and successfully formed several distinct clades of West and East Malaysia (East Coast and West Coast of Peninsular Malaysia) with moderately to highly supported bootstrap values and posterior probabilities. Several haplotype analysis parameters are presented; low nucleotide diversity (PiT, 0.01893), haplotype number (Hn, 19), and high haplotype diversity (Hd, 0.89469). Our findings assumed that the geographical isolation due to the inability for flying long distances without help by the wind and flooding in tidal rivers. The data presented here are important genetic information on the P. tener populations and are important for the conservation programme in Malaysia by conducting the breeding program among populations that have similar genetic information.
... We did not use other adjustment method such as the one proposed by Lleonart et al. (2000) and used by others (e.g. Onn et al. 2018) to correct for allometric growth, because this method relies on coefficients calculated on populations and, therefore, artificially segregates individuals in a priori-determined groups. In addition, this method requires to measure multiple individuals of a given population before calculating the adjusted variables. ...
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Frogs of the genus Leptopelis have diversified in the Ethiopian Highlands to occupy forests and montane grasslands both east and west of the Great Rift Valley. Genetic studies revealed that the endemic species Leptopelis gramineus (Boulenger, 1898) comprises multiple unnamed taxa. A careful examination of historical type specimens is, however, needed to fully resolve the taxonomy of the group. Here we use mito-chondrial DNA and morphological analyses on a large sample of recently-collected Ethiopian Leptopelis, as well as century-old type specimens to demonstrate that the recently resurrected L. montanus Tiutenko & Zinenko, 2021 (previously Pseudocassina ocellata Ahl, 1924) is a junior synonym of L. rugosus (Ahl, 1924) and corresponds to the taxon found west of the Great Rift Valley, not east as previously thought. Our results show that populations inhabiting the mountains and plateaus east of the Rift constitute a distinct and undescribed species. We provide a re-description of L. rugosus and describe two new species inhabiting the Highlands east of the Great Rift Valley. We provide an identification key, as well as a description of the calls of the members of the Leptopelis gramineus species complex.
... Also, failure rates of using exclusively morphological data or single-marker barcoding confrm that neither should be used as a single information source (Hillis, 1987;Smith and Carstens, 2019). This awareness raises the need for a cultural change in the practice of revisionary taxonomy, which places an objective burden of proof on authors, necessitating statistical analyses of multiple data streams (Fujita et al., 2012;Chan et al., 2017Chan et al., , 2018Chan et al., , 2020Jackson et al., 2017;Oliver et al., 2018). In recent years, integrative taxonomic approaches that combine multiple, independent, data or character sets (such as external morphological, internal anatomical, ecological, acoustic, and larval traits; apart from geographic considerations, sympatry versus allopatry, and inference of biogeographical range evolution), and rigorous statistical procedures, are becoming industry standard (Dayrat, 2005;Padial et al., 2010;Schlick-Steiner et al., 2010). ...
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Taxonomic studies over the past decade of the endemic Night Frog genus Nyctibatrachus (originally described in 1882) from Peninsular India have more than tripled, from 11 at the turn of this century to 36 by 2017. Despite these revisionary contributions, it is still challenging for field biologists to identify night frog species reliably, due to a near-complete absence of diagnostic, discrete character states or trait values. Worse, many questionably diagnosed night frog species' status has ostensibly been ''supported'' by phylogenies derived from sparsely sampled gene-trees that are based on a single locus or a handful of markers-with topology and arbitrary genetic distance thresholds of 3-6% used to support new species descriptions. We sought to re-evaluate and validate the species boundaries of six currently nominated species of Nyctibatrachus of the aliciae group (N. aliciae, N. periyar, N. deveni, N. pillaii), N. vasanthi, and N. poocha clade using a comprehensive integrative taxonomic approach that integrates classical taxonomy, molecular species delimitation analysis, statistical analysis of morphological characters of adults and larvae, analyses of bioacoustics, and natural history information. Our results indicate that recent descriptions of Nyctibatrachus deveni, N. periyar, and N. pillaii represent cases of taxonomic inflation (over-splitting), because the evidence cited in support of their recognition is irreproducible, subjective, and devoid of strong statistical support. We demonstrate the need for multidimensional species delimitation approaches in the celebrated Western Ghats biodiversity hotspot paleo-endemic genus Nyctibatrachus and suspect that this concerning trend of over-splitting amphibian species based on limited data and untenable support may be applicable to other amphibian groups.
... file 1: Table S2) to calculate the morphospace of the large (> 100 mm) and the small (< 100 mm) species of Loimia using geometrical n-dimensional hypervolumes (Blonder et al. 2014Blonder 2018). The use of hypervolumes to assist species delimitations and taxonomical descriptions has gained momentum in recent years (Koch et al. 2016;Mammola et al. 2018;Onn et al. 2018). Since some of the traits considered here are categorical, we applied a Gower dissimilarity measure to complete the trait matrix and then extracted orthogonal morphological axes through a principal coordinate analysis (Carvalho & Cardoso 2020;Mammola & Cardoso 2020). ...
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We describe Loimia davidi sp. nov. (Annelida, Terebellidae) from São Miguel Island (Azores). It resembles Loimia gigantea (Montagu, 1819) (English Channel) in having very large adults, the ventral shield shape and the types of capillary notochaetae (three), while differing in shape and colour of the lateral lappets, branchiae length, the arrangement of segments, ventral shields, uncini and pygidial papillae. Large (> 30 cm long) and small (≈ 5 cm long) specimens of L. davidi sp. nov. show typically interspecific morphological differences while clustering in a single entity after species delimitation analyses of a cytochrome c oxidase I fragment. Therefore, we consider them to belong to a single species and discuss the taxonomic implications of size-dependent morphological differences. Within Loimia, we (1) suggest that large specimens may have been scarcely reported due to their rarity and collecting difficulty, while small specimens may have been reported either as ‘sp.’ or as the ‘cosmopolitan’ Loimia medusa (Savigny, 1822), (2) evaluate the size-related morphological disparity in all described species using a hypervolume analysis, (3) identify possible similar size-dependency in previously described species, (4) summarise the morphological information of all known species of Loimia; and (5) discuss on the four species reported in Europe.
... T he large radiation of Asian torrent or waterfall frogs, genus Amolops Cope, 1865 currently contains 72 valid species Wu et al., 2020;Jiang et al., 2021;Patel et al., 2021;Zeng et al., 2021;Zhang et al., 2021; Table 1) distributed throughout the hilly regions of mainland south-east Asia, much of southern and eastern China and along the southern Himalayas as far west as northern India (Dubois, 1974;Ray, 1999;Anders, 2002;Orlov et al., 2002;Wogan et al., 2008;Biju et al., 2010;Fei et al., 2012;IUCN Bangladesh, 2015;Chan et al., 2018;. Recent molecular phylogenetic analysis has identified eight distinct evolutionary radiations now treated as species groups, of which the marmoratus, monticola and viridimaculatus groups are represented in the southern Himalayas where they are broadly sympatric (Wu et al., 2020). ...
Article
This article talks about the Amolops species in Bhutan and also describes new to science species from Bhutan.
... T he large radiation of Asian torrent or waterfall frogs, genus Amolops Cope, 1865 currently contains 72 valid species Wu et al., 2020;Jiang et al., 2021;Patel et al., 2021;Zeng et al., 2021;Zhang et al., 2021; Table 1) distributed throughout the hilly regions of mainland south-east Asia, much of southern and eastern China and along the southern Himalayas as far west as northern India (Dubois, 1974;Ray, 1999;Anders, 2002;Orlov et al., 2002;Wogan et al., 2008;Biju et al., 2010;Fei et al., 2012;IUCN Bangladesh, 2015;Chan et al., 2018;. Recent molecular phylogenetic analysis has identified eight distinct evolutionary radiations now treated as species groups, of which the marmoratus, monticola and viridimaculatus groups are represented in the southern Himalayas where they are broadly sympatric (Wu et al., 2020). ...
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Seven species of the Asian torrent frogs (genus Amolops) have previously been reported from the eastern Himalayan country of Bhutan. Species identifications from the region have been largely based on photographed animals with few voucher specimens available and no molecular sampling. Understanding the taxonomic status of Bhutan’s torrent frogs has also been hampered by the poorly understood distributional limits of species from surrounding regions. Herein we utilised molecular phylogenetic and morphological data for vouchered specimens from Bhutan and provide a complete literature review of all Amolops populations reported from the country. Phylogenetic relationships were estimated by combining available sequence data (from GenBank) with newly generated sequences from recently collected Bhutanese Amolops populations. We also obtained archival DNA sequences from the type specimens of Amolops formosus, A. himalayanus, and A. kaulbacki, collected between 82 and 151 years ago. Our comparative analyses revealed a large, new (to science) species of the Amolops viridimaculatus group from eastern Bhutan. Morphological examinations of related taxa revealed that A. senchalensis from India is not a synonym of A. marmoratus. Molecular phylogenetic results supplemented by morphological data unambiguously demonstrate i) that A. himalayanus is present in eastern Nepal, ii) the presence of a previously undocumented population of A. nepalicus in eastern Nepal, iii) a 200 km range extention for A. kaulbacki into Yunnan, China, iv) that A. gyirongensis should be considered a junior subjective synonym of A. formosus, and v) that A. splendissimus from Vietnam should be considered a junior subjective synonym of A. viridimaculatus. Based on our results, we expand the Amolops viridimaculatus group to include nine species, including A. formosus, A. himalayanus, A. kaulbacki, and the new species described herein. We provisionally include a further three species in the viridimaculatus group based on morphology, A. longimanus, A. nidorbellus, and A. senchalensis. Combining our data with the literature review allowed us to identify several unidentified Amolops species from recent phylogenetic studies and remove nine frog species (including Hyla, Sylvirana, and seven Amolops species) from Bhutan’s amphibian checklist. We recognise four species of Amolops in Bhutan, three of which cannot be confidently identified to the species level based on currently available data.
... T he large radiation of Asian torrent or waterfall frogs, genus Amolops Cope, 1865 currently contains 72 valid species Wu et al., 2020;Jiang et al., 2021;Patel et al., 2021;Zeng et al., 2021;Zhang et al., 2021; Table 1) distributed throughout the hilly regions of mainland south-east Asia, much of southern and eastern China and along the southern Himalayas as far west as northern India (Dubois, 1974;Ray, 1999;Anders, 2002;Orlov et al., 2002;Wogan et al., 2008;Biju et al., 2010;Fei et al., 2012;IUCN Bangladesh, 2015;Chan et al., 2018;. Recent molecular phylogenetic analysis has identified eight distinct evolutionary radiations now treated as species groups, of which the marmoratus, monticola and viridimaculatus groups are represented in the southern Himalayas where they are broadly sympatric (Wu et al., 2020). ...
Article
Seven species of the Asian torrent frogs (genus Amolops) have previously been reported from the eastern Himalayan country of Bhutan. Species identifications from the region have been largely based on photographed animals with few voucher specimens available and no molecular sampling. Understanding the taxonomic status of Bhutan’s torrent frogs has also been hampered by the poorly understood distributional limits of species from surrounding regions. Herein we utilised molecular phylogenetic and morphological data for vouchered specimens from Bhutan and provide a complete literature review of all Amolops populations reported from the country. Phylogenetic relationships were estimated by combining available sequence data (from GenBank) with newly generated sequences from recently collected Bhutanese Amolops populations. We also obtained archival DNA sequences from the type specimens of Amolops formosus, A. himalayanus, and A. kaulbacki, collected between 82 and 151 years ago. Our comparative analyses revealed a large, new (to science) species of the Amolops viridimaculatus group from eastern Bhutan. Morphological examinations of related taxa revealed that A. senchalensis from India is not a synonym of A. marmoratus. Molecular phylogenetic results supplemented by morphological data unambiguously demonstrate i) that A. himalayanus is present in eastern Nepal, ii) the presence of a previously undocumented population of A. nepalicus in eastern Nepal, iii) a 200 km range extention for A. kaulbacki into Yunnan, China, iv) that A. gyirongensis should be considered a junior subjective synonym of A. formosus, and v) that A. splendissimus from Vietnam should be considered a junior subjective synonym of A. viridimaculatus. Based on our results, we expand the Amolops viridimaculatus group to include nine species, including A. formosus, A. himalayanus, A. kaulbacki, and the new species described herein. We provisionally include a further three species in the viridimaculatus group based on morphology, A. longimanus, A. nidorbellus, and A. senchalensis. Combining our data with the literature review allowed us to identify several unidentified Amolops species from recent phylogenetic studies and remove nine frog species (including Hyla, Sylvirana, and seven Amolops species) from Bhutan’s amphibian checklist. We recognise four species of Amolops in Bhutan, three of which cannot be confidently identified to the species level based on currently available data. Keywords: Anura, taxonomy, Himalayas, conservation, vouchered-specimens
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Accurately delimiting species boundaries is a non-trivial undertaking that can have significant effects on downstream inferences. We compared the efficacy of commonly-used species delimitation methods (SDMs) and a population genomics approach based on genome-wide single nucleotide polymorphisms (SNPs) to assess lineage separation in the Malaysian Torrent Frog Complex currently recognized as a single species (Amolops larutensis). First, we used morphological, mitochondrial DNA and genome-wide SNPs to identify putative species boundaries by implementing non-coalescent and coalescent-based SDMs (mPTP, iBPP, BFD*). We then tested the validity of putative boundaries by estimating spatiotemporal gene flow (fastsimcoal2, ABBA-BABA) to assess the extent of genetic isolation among putative species. Our results show that the A. larutensis complex runs the gamut of the speciation continuum from highly divergent, genetically isolated lineages (mean Fst = 0.9) to differentiating populations involving recent gene flow (mean Fst = 0.05; Nm > 5). As expected, SDMs were effective at delimiting divergent lineages in the absence of gene flow but overestimated species in the presence of marked population structure and gene flow. However, using a population genomics approach and the concept of species as separately evolving metapopulation lineages as the only necessary property of a species, we were able to objectively elucidate cryptic species boundaries in the presence of past and present gene flow. This study does not discount the utility of SDMs but highlights the danger of violating model assumptions and the importance of carefully considering methods that appropriately fit the diversification history of a particular system. This article is protected by copyright. All rights reserved.
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The Asian Tree Toad genus Pedostibes, as currently understood, exhibits a conspicuouslydisjunct distribution, posing several immediate questions relating to the biogeography andtaxonomy of this poorly known group. The type species, P. tuberculosus and P. kempi, areknown only from India, whereas P. hosii, P. rugosus, and P. everetti are restricted to SoutheastAsia. Several studies have shown that these allopatric groups are polyphyletic, withthe Indian Pedostibes embedded within a primarily South Asian clade of toads, containingthe genera Adenomus, Xanthophryne, and Duttaphrynus. Southeast Asian Pedostibes onthe other hand, are nested within a Southeast Asian clade, which is the sister lineage to theSoutheast Asian river toad genus Phrynoidis.We demonstrate that Indian and SoutheastAsian Pedostibes are not only allopatric and polyphyletic, but also exhibit significant differencesin morphology and reproductive mode, indicating that the Southeast Asian species’are not congeneric with the true Pedostibes of India. As a taxonomic solution, we describe anew genus, Rentapia gen. nov. to accommodate the Southeast Asian species.
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We provide data supporting the continued recognition of Cnemaspis affinis (Stoliczka) and Cnemaspis flavolineata (Nicholls) as separate species and restrict their distribution to Pulau Pinang, Penang for the former and the Titi Wangsa Range and Gunung Benom, Peninsular Malaysia for the latter. For the montane population of Cnemaspis from Bukit Larut, Perak, which has been referred to as both C. affinis and C. kendallii, we demonstrate that it is discretely diagnosable from all other Southeast Asian Cnemaspis on the basis of size and numerous color pattern and scale characteristics and for it we provide the new name Cnemaspis mcguirei sp. nov. Two new lowland, karst-dwelling species from isolated locations along the foothills of the Titi Wangsa and Timur ranges in northern Peninsular Malaysia are demonstrably differentiable from all other Southeast Asia Cnemaspis on the basis of color pattern and scale morphology and are described herein as Cnemaspis karsticola sp. nov. from Gunung Reng, Kelantan and Cnemaspis bayuensis sp. nov. from Kampung Bayu, Kelantan.
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We record Amolops cremnobatus Inger & Kottelat, 1998 for the first time from Thanh Hoa Province, north-central Vietnam, which also represents the northernmost record of this species. Specimens of A. cremnobatus were found at three limestone karst forest sites within the Pu Hu Nature Reserve at altitudes between 277 and 526 m a.s.l. Adults and larval stages matched the diagnostic morphological characters of the original description of A. cremnobatus, such as small size, tarsal gland present, vomerine teeth present, tympanum distinct, nuptial pads distinctly developed in males, and tadpoles with upper jaw sheath divided and labial teeth row formula io(5-io)/6(i). Besides natural history notes for both developmental stages and adults, we present an extended larval description based on a tadpole at Gosner (i960) stage 31. The tadpole belongs to the exotrophic, lotic, gastromyzophorus larval type after McDiarmid & Altig (1999) and possesses the typical characteristics of a fast-water stream dweller, i.e., a large abdominal sucker disc, thick tail musculature, and reduced fins. In addition, the first larval staging for the genus Amolops in general is provided in this paper, based on the species A. cremnobatus. © 2015 Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V. (DGHT), Mannheim, Germany.
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An integrative taxonomic analysis of three newly discovered populations of the gekkonid genus Cyrtodactylus Gray from Merapoh, Pahang; Gunung Stong, Kelantan; and Gunung Tebu, Terengganu indicate they are part of the C. pulchellus complex and each is a new species and thusly named Cyrtodactylus sharkari sp. nov., C. jelawangensis sp. nov., and C. timur sp. nov., respectively. Each species bears a unique suite of morphological and color pattern characters separating them from each other and all other nominal species in the C. pulchellus complex. Their phylogenetic relationships to each other and other species in the C. pulchellus complex were unexpected in that they are not in accordance with the general distribution of the species in this complex, underscoring the intricate historical biogeography of the Thai-Malay Peninsula. These descriptions highlight our current lack of knowledge concerning the herpetological diversity and distribution of species in northeastern Peninsular Malaysia.
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A new species of Ansonia is described based on genetic and morphological differentiation. Ansonia lumut sp. nov. is most closely related to three other Peninsular Malaysian species, A. penangensis, A. malayana, and A. jeetsukumarani but differs from these and other congeners by at least 6.9% sequence divergence at the 12S, 16S rRNA and t-RNA-val genes and the following combination of morphological characters: (1) SVL 21.0-23.6 mm in males, 27.7-31.6 mm in females; (2) first finger shorter than second; (3) interorbital and tarsal ridges absent; (4) light interscapular spot absent; (5) presence of large, yellow rictal tubercle; (6) dorsum black with greenish-yellow reticulations; (7) flanks with small yellow spots; (8) fore and hind limbs with yellow cross-bars; and (9) venter light gray with fine, white spotting.
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