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1. Disruption of longitudinal connectivity poses one of the most important threats to the persistence of freshwater biodiversity worldwide. Longitudinal connectivity plays a key role by facilitating ecological processes, such as migrations or transfer of energy along river networks. For this reason, effective conservation of freshwater biodiversity is highly dependent on our capacity to maintain all processes associated with connectivity. Freshwater protected areas are commonly affected by disruptions of connectivity due to anthropogenic activities and recent approaches to addressing connectivity when identifying priority areas have overlooked the limitations that human perturbations pose to connectivity. 2. Here, a novel approach is presented to address this issue by accounting for the spatial distribution of barriers in Marxan, a commonly used tool for conservation planning. This approach is first tested on a simulated example and then applied to the identification of priority areas for the conservation of freshwater vertebrates in the Iberian Peninsula (Spain and Portugal). 3. When using this new approach, the number of disrupted connections within priority areas can be significantly reduced at no additional cost in terms of area needed, which would help maintain connectivity among populations of species with low-medium migratory needs. 4. Given the widespread occurrence of barriers in the study region, the improvement in connectivity within priority areas also resulted in the selection of river reaches closer to the headwaters and the river mouth. Focusing on both extremes of the longitudinal gradient might compromise the effectiveness of conservation efforts for long migratory species, such as the European eel. This inevitably means that additional management measures, like barrier removal or construction of fish ladders, would be necessary to ensure these migratory species may complete their life cycles. 5. The method demonstrated here could be applied to other regions where connectivity is compromised.
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Freshwater conservation in a fragmented world: dealing with barriers in a
systematic planning framework
Virgilio Hermoso1,2, Ana Filipa Filipe3,4, Pedro Segurado5, Pedro Beja3,4
1 Centre Tecnològic Forestal de Catalunya, Crta. Sant Llorenç de Morunys, Km 2. 25280,
Solsona. Lleida, Spain.
2 Australian Rivers Institute and Tropical Rivers and Coastal Knowledge, National
Environmental Research Program Northern Australia Hub, Griffith University, Nathan,
Queensland, 4111, Australia.
3 CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da
Universidade do Porto, Campus Agrário de Vairão, R. Padre Armando Quintas, 4485-661
Vairão, Portugal.
4 CEABN/InBIO, Centro de Ecologia Aplicada, Instituto Superior de Agronomia, Universidade
de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
5 Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa 1349-
017 Lisboa, Portugal.
Running title: Conservation in disconnected systems.
Word count: 4488
Corresponding author: Virgilio Hermoso
email: virgilio.hermoso@gmail.com
Tlf: (34) 671832489
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Abstract
1. Disruption of longitudinal connectivity poses one of the most important threats to the
persistence of freshwater biodiversity worldwide. Longitudinal connectivity plays a key role by
facilitating ecological processes, such as migrations or energy transfer along river networks. For
this reason, effective conservation of freshwater biodiversity is highly dependent on our
capacity to maintain all processes associated with connectivity. Freshwater protected areas are
commonly affected by disruptions of connectivity due to anthropogenic activities and recent
approaches to addressing connectivity when identifying priority areas have overlooked the
limitations that human perturbations pose to connectivity.
2. Here, a novel approach is presented to address this issue by accounting for the spatial
distribution of barriers in Marxan, a commonly used tool for conservation planning. This
approach is first tested on a simulated example and then applied to the identification of priority
areas for the conservation of freshwater vertebrates in the Iberian Peninsula (Spain and
Portugal).
3. When using this new approach, the number of disrupted connections within priority areas can
be significantly reduced at no additional cost in terms of area needed, which would help
maintain connectivity among populations of species with low-medium migratory needs.
4. Given the widespread occurrence of barriers in the study region, the improvement in
connectivity within priority areas also resulted in the selection of river reaches closer to the
headwaters and the river mouth. Focusing on both extremes of the longitudinal gradient might
compromise the effectiveness of conservation efforts for long-distance migratory species, such
as the European eel. This inevitably means that additional management measures, like barrier
removal or construction of fish passages, would be necessary to ensure these species may
complete their life cycles.
5. The method demonstrated here could be applied to other regions where connectivity is
compromised.
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Keywords: amphibians, connectivity, dam, fish, Iberian Peninsula, Marxan, , reptiles, river,
systematic planning.
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Introduction
Longitudinal connectivity plays a key role in freshwater ecosystems by facilitating ecological
processes, such as migrations or the transport of energy and materials along river networks
(Ward, 1989; Pringle, 2001). A multitude of anthropogenic activities have, however, deeply
modified the natural connectivity of running waters; these include barriers such as in-channel
dams, weirs or culverts (Januchowski-Hartley et al., 2013; Rolls, Ellison, Faggotter, & Roberts,
2013; Zarfl, Lumsdon, Berlekamp, Tydecks, & Tockner, 2015), often associated with alteration
of natural flows (Bunn, & Arthington, 2002), habitat degradation and modification of water
quality (Dudgeon et al., 2006). Alterations to natural connectivity increase habitat fragmentation
and cause impacts such as disruption of gene flow (Heggenes & Røed 2006; Roberts,
Angermeier, & Hallerman, 2013) or complete blockage of migratory routes essential to the
survival of diadromous fish or aquatic mammals (Choudhary et al., 2012; Maceda-Veiga, 2013;
Segurado, Branco, Avelar, & Ferreira, 2015). For example, Clavero & Hermoso (2015)
estimated that the European eel, a migratory species that was once widespread throughout the
whole Iberian Peninsula, has lost over 80% of its original distribution range mainly due to the
massive dam construction since the 1950s. Segurado et al., (2015) also reported considerable
habitat losses in Portugal of 58% and 72% for sea lamprey (Petromyzon marinus) and allis shad
(Alosa alosa), respectively, during the last century. In-stream barriers might also compromise
the persistence of other not strictly aquatic taxa such as amphibians or reptiles that use riparian
corridors to disperse along streams due to the low habitat resistance offered by this pathway
(Grant, Lowe, & Fagan, 2007; Grant, Nichols, Lowe, & Fagan, 2010). Modification of natural
flow patterns caused by dams can also result in habitat loss for these taxa (e.g., Hunt et al.,
2013; Eskew, Price, & Dorcas, 2012), with consequences, for example, on breeding success
(e.g., Lind, Welsh Jr, & Wilson, 1996) and reductions of connectivity among populations
(Fagan, 2002). For all those reasons, effective conservation of freshwater biodiversity is highly
dependent on our capacity to maintain all ecological and evolutionary processes linked to
stream connectivity.
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Despite a later start than in other realms, there have been considerable advances in the field of
conservation planning applied to freshwater systems in the last decade (Collier, 2011; Hermoso,
Abell, Linke, & Boon 2016). The attention has mainly focused on addressing the singularities of
these systems derived from their dendritic nature (Peterson et al., 2013), with particular
connectivity constraints that make effective conservation planning and implementation a
challenge (Linke, Turak, & Nel, 2011; Collier, 2011). There are novel methods available to
integrate different aspects of connectivity in the identification of priority areas for freshwater
biodiversity conservation and enhance their effectiveness, such as longitudinal, lateral or
temporal connectivity (Moilanen, Leathwick, & Elith, 2008; Hermoso, Linke, Prenda, &
Possingham, 2011; Hermoso, Kennard, & Linke 2012a; Hermoso, Ward, & Kennard, 2012b).
However, most of these advances and conservation efforts have overlooked the limitation that
human perturbations pose to connectivity, both structural (i.e., physical relationships among
habitat patches irrespective of behavioural response of organisms) and functional (ease with
which individuals can move within the river-landscape). As a consequence, freshwater protected
areas are commonly affected by disconnection from upstream or downstream areas imposed by
dams and other infrastructures (e.g., Hermoso, Filipe, Segurado, & Beja, 2015a; Thieme et al.,
2016). Even when fish passages are present, they are often inefficient in facilitating movement
(e.g., fish ladders), and consequently the dam often restricts the gene flow between fish
populations located up- and downstream of the barrier, leading to population isolation
(Esguícero, & Arcifa, 2010). Therefore, there is an urgent need for novel approaches to help
decision-makers and stakeholders address the constraints to the effectiveness of protected areas
for the conservation of freshwater biodiversity.
There are two main alternatives to address the problem of fragmentation caused by dams. One is
to selectively remove barriers or implementing effective passages (e.g., fish ladders) to enhance
connectivity within and among existing protected areas. Optimization of barrier removal has
been explored in the last decade, aiming to identify priority sets of barriers that should be
removed or made more permeable (e.g., installing fish passages) to maximise gains in
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connectivity (e.g., O’Hanley, Wright, Diebel, Fedora, & Soucy, 2013; Zheng, & Hobbs, 2013;
Branco, Segurado, Santos, & Ferreira, 2014). However, barrier removal can be expensive
(Zheng, & Hobbs, 2013) or unfeasible due to socioeconomic constraints (Arthington, Naiman,
McClainme, & Nilsson, 2010), so this management option is often unrealistic. The second
option is to account for extant or planned barriers and allocate conservation effort to areas that
are less prone to their impacts. In this way it might be possible to improve the effectiveness of
priority conservation areas for freshwater biodiversity, while reducing potential conflicts with
stakeholders by addressing key socioeconomic constraints. However, this option has yet to be
explored from a conservation planning perspective.
Here, a method for integrating information on the spatial distribution of barriers in a systematic
planning framework to enhance the effectiveness of conservation efforts for freshwater
biodiversity is demonstrated. The software Marxan (Ball et al., 2009) is used to identify priority
areas for conservation while accounting for existing disconnections. Different alternatives to
address disconnections on a simulated case study are first tested, and then one of them is used to
demonstrate how it can be implemented on a real case study using aquatic vertebrates and
existing dams in the Iberian Peninsula. The aim of this method is to reduce habitat
fragmentation of priority areas for conservation, both within each area and from upstream/
downstream areas. Accounting for the spatial distribution of barriers would help compensate for
the impacts derived from these infrastructures and ultimately the effectiveness of conservation
efforts for freshwater biodiversity.
Methods
Addressing disconnections in Marxan
In this study the software Marxan (Ball, Possingham, & Watts, 2009) was used to find an
optimal set of planning units to represent all conservation features at the minimum cost, while
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incorporating spatial constraints, such as longitudinal connectivity. The formulation of the
mathematical problem addressed in Marxan is as follows:

   

 
Eq. 1

 
Eq. 2
where xi is a control variable that takes a value of 1 when the subcatchment ci is selected and 0
otherwise; cvi1,i2 represents a penalty for missing connections in the solution (e.g., when
subcatchment i1 is in the solution but i2 is not); aij is the representation of species j achieved by
selecting subcatchment i and tj is the total representation target aimed for each species j.
Marxan uses a heuristic optimisation algorithm to minimize an objective function (Eq. 3) that
comprises Eq 1 and Eq 2, and includes the cost of planning units in the solution and other
penalties for not achieving the conservation target for all the conservation features (Feature
Penalty, weighted by Species’ Penalty Factor, SPF) and spatial constraints (connectivity
weighted by a Connectivity Strength Modifier, CSM). This latter parameter in Marxan allows
users to incorporate parameters that accommodate the spatial particularities derived from the
dendritic structure and connectivity inherent to freshwater ecosystems and their threats (see
Hermoso et al., 2011).
Eq. 3.
To test the potential use of Marxan to address existing disconnections in a freshwater setting, a
simple case was simulated with a linear structure composed of ten consecutive planning units,
together representing a hypothetical subcacthment, flowing from a headwater planning unit to
an outlet (Fig. 1a). This structure was used to build a connectivity file as usually done for
  featuresunitsplanning PenaltytyConnectiviCSMPenaltyFeatureSPFCostfunctionObjective
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Marxan applications in freshwater environments (Hermoso et al., 2011; Esselman et al., 2013).
This file differs from terrestrial and marine boundary files as it contains all the longitudinal
connections between planning units, instead of shared boundaries as normally done in other
realms. Penalties in the boundary file are distance weighted according to the distance between
planning units along the river network following equation 4.
Connectivity penalty=dij(km)-1/2 Eq. 4
where dij is the distance between planning units i and j (Fig. 1b). In this example, we assumed
planning units to have a regular shape with a total length of river within each cell of 1 km. For
example the penalty for including planning unit 6 but not 8 in the solution would be 0.71
(penalty=2-1/2, where the value 2 is the distance between planning units 6 and 8). This penalty
decays exponentially with distance between planning units, so the farther two planning units are
apart, the lower the penalty that would apply if not selected together.
The occurrence of two longitudinal barriers, located in planning units 4 and 7, was also
simulated, (Fig. 1b). These barriers break the continuity of the system with, restricting or
outright eliminating the connection between close planning units such as 6 and 8, depending on
the strength of the barrier effect. To address these disconnections in Marxan, the boundary file
was modified by incorporating a new parameter in the calculation of the connectivity penalties.
In this case, the existence of a barrier between each combination of planning units connected
along the river network was accounted for by introducing a new discount factor (R) that
modifies the distances used in Eq. 2, as follows:
dij´=dij+(R/dij) Eq. 5
where dij´ is a modified distance between planning units i and j, R is the discount factor for the
barrier effect and dij as above (Fig. 1b). This new dij´ was used to recalculate the connectivity
penalties as above. In this way, the connectivity penalty between planning units separated by a
barrier would decrease, indicating that the connection is weaker than expected from the true
geographic distance between units. Factor R can be adjusted to account for the strength or
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imperviousness of each particular barrier. For example, large R values would indicate stronger
disconnections due to the absence of fish passages, while smaller R values would indicate that
the barrier is more permeable (e.g., road crossings or culverts which some species might be able
to pass over; e.g. Jauchowski-Hartley et al., 2012). For the sake of simplicity, we kept R
constant for both barriers in this case study (R=1), so the discount factor was just based on the
distance between each pair of planning units (the more distant they were from the barrier, the
lower the decay due to the effect of the barrier). In the example in Fig. 1, the penalty for the
connection between planning units 6 and 8 would decrease to 0.35 [0.71*(1/2)], so this
connection would be considered less relevant. To test the effect of this new boundary file we
simulated the distribution of three conservation features, which occurred in all planning units
and assumed equal cost for all planning units. Marxan was then ran with a CSM=1, SPF=10 and
a representation target=5 (50% of each species´ distribution) under three alternative planning
approaches: i) as if no barriers existed (Fig 1c; similar to Hermoso et al., 2011); ii) locking out
planning units where barriers occur (Fig 1d); and iii) using the new approach to discount for
broken connections (Fig 1e).
Application to the Iberian Peninsula
The methodology detailed above was applied to the identification of priority areas for
conservation of freshwater biodiversity in the Iberian Peninsula, under the constrains of existing
dams. The Iberian Peninsula (Spain and Portugal, excluding islands) is located in south-western
Europe, covering a total area of approximately 583,000 km2 and spans across four freshwater
ecoregions (Abell et al., 2008). The study focused on the entire Iberian Peninsula to account for
(1) the role of connectivity along river networks for freshwater ecosystems and biodiversity
(e.g., migration of organisms, flow of energy and matter) across a whole distinctive
biogeographical unit, and (2) the propagation of disconnection effects due to existing dams in
both countries. This area is also especially relevant for a study like this as it holds one of the
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most severely regulated river systems in the world (Grill et al., 2015), and it is home to some of
the most highly threatened freshwater biodiversity in Europe (Maceda-Veiga, 2013).
The most up-to-date information on the spatial distribution for 93 freshwater-related species,
including 63 fish species, 25 amphibians and 5 semi-aquatic reptiles was compiled (Appendix
S1) The occurrence datasets of aquatic amphibians and reptiles from most recent atlases at a 10-
km grid cell resolution were merged (Spain: Pleguezuelos, Márquez, & Lizana, 2002; Portugal:
Loureiro, Ferrand de Almeida, Carretero, & Paulo, 2010). Fish data for Portugal was based on
the database built in Filipe et al., (2009) and in the Carta Piscícola
(http://www.cartapiscicola.org/), at sampling site resolution (Rogado et al., 2005), whereas data
for Spain was derived from the most recent atlas at a 10-km grid cell resolution (Doadrio,
2002). Recent sampling carried out by the authors were used to update these datasets. The final
database comprised the most comprehensive information on freshwater species occurrences for
these taxonomic groups in the Iberian Peninsula, with 49,463 occurrence records within 5,938
10-km grid cells. To make the analyses sounder for freshwater ecosystems, the information
originally reported in 10-km grid cells was translated into subcatchments. A total of 19,854
subcatchments, each including the portion of river length between two consecutive nodes or
river connections and its contributing area (Length= 7.7 ± 4.8 km, Area= 29.12 ± 23.5 km2;
Average ± SD) were delineated from a 90 m digital elevation model (sourced from the SRTM
90m Digital Elevation Database v4.1; Jarvis, Reuter, Nelson, & Guevara, 2008) in ArcGIS 10.1
(ESRI 2011). The grid cells and subcatchments were then intersected and a species was
assumed to be present in a subcatchment whenever the grid cell occupied more than 50% of the
subcatchment. The spatial distribution of each species was then visually inspected to ensure that
occurrences had not been assigned to the wrong hydrological catchment from grid cells
overlapping two neighbour catchments. This resulted in 180,584 occurrence records (species x
subcatchmnets) for the whole Iberian Peninsula.
The distribution of large dams was sourced from the Global Reservoir and Dam (GRanD)
database (Lehner et al., 2011), which contain georeferenced locations for all reservoirs with a
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storage capacity > 100 Hm3. This dataset contained the location of 305 dams in the Iberian
Peninsula. Although there are a number of smaller reservoirs (<100 Hm3) and other barriers to
longitudinal connectivity in the Iberian Peninsula, these were not considered because
comprehensive georeferenced information was lacking and large dams represent the main
obstacles to connectivity along rivers. An arbitrarily large and constant discount factor (R=500)
was used for the analyses, given that there was no reliable data available on the relative
permeability of each dam. This large value assumes that the permeability of barriers included in
this study was always low, as all of them were large dams that strongly constrain movements
along waterlines of the species considered. Given the special interest of this study in testing the
effect of this new boundary file, a constant cost for all subcatchments was used (cost=1), as well
as constant CSM=1 and SPF=10 for the two different boundary files mentioned previously:
traditional (Hermoso et al., 2011; see Fig 1c) and accounting for disconnections. A
representation target of 200 subcatchments was set for both scenarios, though this arbitrary
threshold would need to be fine-tuned in relation to properly defined conservation objectives in
practical applications of the approach. Nevertheless, this conservation target was considered
reasonable because it represents the whole range for 30 species, and >25% of the range for 50%
of the species considered. Marxan was ran 100 times (1 million iterations each) and retained the
best solution over those runs for further analyses.
Three alternative measures were used to evaluate how the modified boundary file affected the
conservation planning solutions. First, the number of disrupted connections in both directions
(up- and downstream) between all priority subcatchments included in the best solution was
measured for each planning scenario, testing the expectation that there should be less
disruptions when using the modified boundary file. A connection between two subcatchments
was considered to be disrupted whenever there was a dam between two priority subcatchments
that were otherwise connected longitudinally along the stream network. To account for
differences between planning scenarios in the number of subcatchments included in the best
solution, the number of disrupted connections was standardised by the number of priority
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subcatchments selected. This was done because the larger the number of subcatchments in the
solution, the larger the number of connections involved. Second, for each planning scenario the
average distances (±SE) of subcatchments included in the best solution to their headwaters and
the mouth of the river was also measured, to check whether the spatial location of priority
subcatchments moved within the stream network across planning scenarios to account for
existing barriers. Finally, the number of dams within subcatchments included in the best
solution were also counted for each planning scenario.
Results
Effect of different approaches to address disconnections
For the hypothetical river configuration, the use of different approaches to dealing with
disconnections had significant effects on the selection of priority areas. Planning units selected
when using the traditional boundary file were clumped towards headwaters (Fig. 1c). When
planning units containing dams were locked out of the selection process, the units selected were
also clumped towards the headwaters, with the exception of unit 7 that was not available in this
case (Fig. 1d). In both these alternatives, the best solutions included disrupted connections
between adjacent planning units , which would compromise connectivity within priority areas
for conservation. Only when using the modified boundary file the disrupted connections
between the planning units selected were minimised (Fig. 1e). In this latter case, the planning
units selected were located at both extremes of the longitudinal gradient (i.e., either close to
headwater or to the mouth). Given the large constraints to connectivity imposed by the presence
of dams in the simulated example, there were still disrupted connections in the solution (e.g.,
connections between planning units in the mouth and headwaters). However, there were no
adjacent planning units selected with broken connections due to dams, which would help
maximise connectivity within selected areas.
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Figure 1. Simulated case study of ten subcatchments (a) and spatial allocation of two barriers
(b). Penalties to missed connectivity in Marxan were derived from the distance between
subcatchments in a) and modified to account for the disruption to connectivity caused for
barriers in b). For the sake of simplicity only the upstream connections are shown here, although
downstream connections were equally accounted for. * Indicates those upstream connections to
subcatchment number 6 that were affected by a dam, located in subcatchment number 7.
Solutions from three alternative planning scenarios are also shown: c) by using the standard
connectivity measure, d) by locking subcatchments that contain barriers out, and e) by using the
modified connectivity measure to account for the spatial distribution of barriers. Open cells in c-
e indicate subcatchments not selected, close cells indicate subcatchments that were selected by
Marxan and bold cells indicate those that contained a dam.
Application to the Iberian Peninsula
Accounting for existing barriers in the identification of priority areas for conservation of
freshwater biodiversity in the Iberian Peninsula had a significant effect on all the parameters
evaluated. Although the numbers of subcatchments selected in both planning approaches were
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similar (N=4859 and N=4910, there were significant differences (Cohen´s kappa=0.69,
p<0.001) in the spatial allocation of priority subcatchmnets when using either the traditional or
the modified boundary file accounting for dams (Fig. 2). As for the spatial allocation of these
priority subcatcments within the stream network, these moved towards the extremes of the
longitudinal gradient when using the modified boundary file. This is highlighted when
comparing the spatial location of the priority subcatchments selected under either the traditional
or the modified approach, which in the latter case were significantly closer to the headwaters
(F=6.51, p=0.01) and the river mouth (F=6.45, p=0.01) (Fig 3). In addition, the number of
disrupted connections between priority subcatchments was lowest when using the modified
approach (Fig. 4), and the number of dams within priority subcatchments was lower in the
modified (N = 59) versus the traditional (N = 79) planning solution.
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Figure 2. Spatial distribution of subcatchments selected by Marxan under two alternative
planning scenarios: a) by using the standard connectivity measure and b) by using the modified
connectivity measure to account for the spatial distribution of large dams in the Iberian
Peninsula. The map represents the best solution after 100 runs with 1 million iterations each.
Grey subcatchments represent those selected in both solutions; red subcatchments represent
those selected in the solution with the standard connectivity; green subcatchments represent
those selected in the solution with the modified connectivity.
Discussion
This study demonstrates how to incorporate information on existing barriers in a conservation
planning framework to help minimise impacts derived from these infrastructures, and ultimately
enhance the effectiveness of conservation efforts for freshwater biodiversity. The loss of
connectivity is a critical threat to the conservation of freshwater biodiversity (Humphries &
Winemiller 2009; Vörösmarty et al., 2010; Lierman et al., 2012), but has not been adequately
addressed yet in a conservation prioritisation context. As a consequence, freshwater protected
areas are generally affected by disconnections from their upper and lower catchments (e.g.,
Hermoso et al., 2015a; Thieme et al., 2016), and freshwater species, in particular migratory fish,
continue to decline in those areas (Dudgeon et al., 2006; McRae, Freeman, & Deinet, 2014).
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Figure 3. Average ± SE distance to headwater and river mouth across subcatchments selected by
Marxan under the two alternative planning scenarios: when using the traditional connectivity
measure (black bars) and when accounting for the spatial distribution of large dams (white
bars). There were significant differences in the average location of subcatchments selected
(F=6.51, p=0.01; F=6.45, p=0.01 for headwater and river mouth respectively).
By explicitly accounting for the location of dams in the prioritisation process, the connectivity
within and among priority areas can be improved. In our application to the Iberian Peninsula,
we found that the number of disrupted longitudinal connections among priority subcatchments
could be reduced to just 1/3 of those that would occur in solutions disregarding dams. This was
achieved at no additional cost in terms of the amount of area selected in relation to the solution
provided by the traditional approach. However, there were changes in the spatial location of the
subcatchments selected, which tended to be closer to either the river mouths or especially to
headwaters. This happened because of the widespread occurrence of dams in medium-low
reaches of Iberian rivers, which made it difficult to achieve fully connected priority areas. The
weight applied to connectivity ensured that these areas hosted long reaches completely
connected (see Fig. 2), which would help maintain connectivity among populations of species
that undergo short to moderate migratory movements to complete their life cycle. However,
focusing on both extremes of the longitudinal gradient might compromise the effectiveness of
conservation efforts for long-distance migratory species, such as the European eel (Feunteun,
2002). In fact, under the limitations imposed by the widespread occurrence of barriers there
would be a shortage of medium reaches selected for conservation management to connect upper
and lower reaches. This inevitably means that additional management measures, like barrier
removal or construction of fish passages, would be necessary to ensure these long-distance
migratory species may complete their life cycles. In this sense, a combination of the
methodology demonstrated here and other approaches to identifying key barriers to be managed
17
would be necessary to enhance the overall effectiveness of conservation efforts in river
networks.
Figure 4. Number of upstream and downstream broken connections among subcatchments
selected by Marxan under two alternative planning scenarios. The number of broken
disconnections were standardised by the number of subcatchments in each solution. A
connection between two subcatchments selected by Marxan was considered broken when they
were longitudinally connected along the river network but a dam was present between them.
The number of broken connections was standardised by the number of subcatchmnets selected
under the two alternative scenarios.
The maintenance of ecological processes in freshwater ecosystems require whole catchment
scale planning, as we demonstrate here, to ensure issues related to longitudinal connectivity are
adequately addressed. This might entail in many cases transboundary collaboration between
different regional and/ or national governments (e.g., Dolezsai, Sály, Takács, Hermoso, & Eros,
2015), which is a case in point in the Iberian Peninsula, where many of the largest catchments
have the headwaters in Spain and the mouth in Portugal. Efforts have been made to overpass
transboundary problems of rivers (e.g., Correia & da Silva 1997), as the bilateral agreement
“Albufeira Convention” between Spain and Portugal for assuring minimum flows and
communication needed during floods and droughts (López-Moreno et al., 2009). But additional
18
efforts are needed to maximize and assure persistence of freshwater biodiversity, as without
whole catchment planning the effectiveness of conservation efforts in one country could be
compromised by the lack of action in the other (e.g., Anaecypris hispanica, an endangered
species according with IUCN, has isolated populations in each side or the border and needs
concerted planning and actions). The maintenance of ecological processes related to
longitudinal connectivity might, however, result in large areas to be managed for conservation
(e.g., Filipe at al., 2004). This could compromise the feasibility of conservation plans in these
systems, at least under traditional management schedules based on strict reservation. However,
more flexible approaches based on multiple management zones (see Abell, Allan, & Lehner,
2007) is gaining the attention in this field for its capacity to accommodate the demand of large
areas in need of management under specific regimes (e.g., Hermoso, Cattarino, Kennard, &
Linke, 2015b; Hermoso, Filipe, Segurado, & Beja, 2016). For example, among all
subcatchments selected in this study, not all need to be strictly protected, as some have been
selected to ensure connectivity between populations, for example. Those subcatchments
highlighted for connectivity could be under a special management regime to ensure connectivity
is effective all year (e.g., no barriers) or temporally, whenever it is needed (e.g., adequate
environmental flows to facilitate migrations during spawning periods).
The adequate consideration of barriers in conservation planning will need good inventories of
their spatial location, permeability characteristics and potential impact on biodiversity
(Januchowski-Hartley, Diebel, Doran, & McIntyre, 2012; Januchowski-Hartley et al., 2013;
Mantel, Rivers-Moore, & Ramulifho, 2017). Here, the spatial location of large dams in the
Iberian Peninsula was used for the sake of demonstration and consistency in data quality across
the whole study area. However, there is a multitude of other smaller infrastructures, such as
weirs and ponds, culverts or road passages, that can seriously compromise the maintenance of
key ecological processes, with severe cumulative effects (Alexandre & Almeida 2010). Not all
of them, however, pose impassable barriers or compromise longitudinal connectivity, and then
do not necessarily need to be accounted for in planning exercises. Discerning the relative impact
19
of these barriers, and not only mapping them, seems an enormous effort that could be supported
by novel modelling approaches (e.g., Januchowski-Hartley et al., 2012). The approach that we
demonstrate here can accommodate the information on the impact of different barriers by
modifying the R parameter specifically for each of them according to their characteristics (e.g.,
dam high, reservoir size, effectiveness of fish passage for fish, and lateral riparian corridors for
amphibians and reptiles) and potential impact on biodiversity. Finally, the approach
demonstrated here to account for the effect of barriers in conservation planning to be useful in
other realms and habitats, from terrestrial to marine, affected by similar connectivity problems.
Conclusions
Given the widespread modification to longitudinal connectivity of the world´s streams, and our
limited socio-economic and technical capacity to address the problem, the approach we present
here could help minimise impacts derived from these infrastructures and ultimately to enhance
the effectiveness of conservation efforts for freshwater biodiversity. The approach demonstrated
here could be an alternative or complementary to other approaches more focused on identifying
barriers to be removed or made more permeable (e.g., O´Hanley et al., 2013; Zheng, & Hobbs,
2013; Branco et al., 2014). These other alternatives are commonly constrained by financial
and/or technical capacity to implement the recommendations that arise from the prioritisation
analyses. Moreover, the effectiveness of traditional efforts to mitigate the impact of barriers,
such as fish passages or riparian corridors, at re-establishing connectivity between isolated
populations is limited in many cases (Esguícero & Arcifa, 2010). The approach demonstrated in
this study does not propose methods to act directly on barriers, but accommodate instead the
identification of priority areas for conservation efforts to the spatial distribution of existing
barriers. In this way, the potential socio-economic impact of our recommendations which could
be minimised and help enhance implementation of conservation in this realm. This is especially
relevant under the current context of accelerated rate of new dam construction, which is
expected to increase in the near future worldwide (Zarfl et al., 2015). Proactive planning taking
20
into account future barriers is urgently needed (Winemiller et al., 2016) to ensure that
freshwater ecosystems, biodiversity and the services they provide do not continue the declining
path they have experienced in the last decades (McRae et al., 2014).
Acknowledgements
We acknowledge funding support provided by the Spanish Government through a Ramon y
Cajal contract (RYC-2013-13979) to VH. AFF was supported by the FRESHING Project
funded by FCT and COMPETE (PTDC/AAG-MAA/2261/2014 POCI-01-0145-FEDER-
016824). PS was supported by MARS project funded under the 7th EU Framework Programme
(Contract No.: 603378). PB was supported by EDP Biodiversity Chair.
21
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... Systematic conservation planning offers the possibility to identify priority areas for conservation actions by informing policy and management decisions in a cost-effective way (Margules & Pressey, 2000). Previous planning approaches that explicitly address river fragmentation by in-channel barriers have shown the importance of improving connectivity to achieve conservation targets (Hermoso et al., 2018;Hermoso, Clavero, & Filipe, 2021;Hermoso, Vasconcelos, et al., 2021) but may also contribute to establishing dispersal routes for species whose distributions may change in the future (Bush et al., 2014). Similarly, static protected areas that focus on the current distributions of species ...
... Therefore, considering the dynamic and uncertain impacts of threatening processes such as climate change and habitat fragmentation, while accounting for species interactions, is crucial to improve conservation plans (Groves et al., 2012;Linke et al., 2019;Nogueira et al., 2023;Strange et al., 2011). Incorporating climate change and connectivity in conservation planning is increasingly needed (e.g., Bush et al., 2014;Hermoso et al., 2011Hermoso et al., , 2018Hermoso, Clavero, & Filipe, 2021;Hermoso, Vasconcelos, et al., 2021;Jones et al., 2016;Keeley et al., 2019;Lin et al., 2017;Magris et al., 2014;Reside et al., 2018). Recently, it has been shown that more comprehensive | 3 of 17 da SILVA et al. ...
... Achieving the targets for these species and their interactions comes at the cost of selecting the last remaining strongholds or climate refuges, which are often irreplaceable and scattered across the study area, for example in small headwater streams. Hence, the reduced number of relevant planning units to prioritize under climate change may inevitably lead to highly disconnected solutions that, despite achieving conservation targets for imperilled features, may weaken the maintenance of ecological and evolutionary processes associated with river connectivity (Groves et al., 2012;Hermoso et al., 2018). From a conservation perspective, the long-term persistence of these species could be at high risk: even if we manage to cover their last strongholds, they will be less connected and therefore subject to the effects of declining genetic diversity and stochastic natural events that may increase the extinction risk. ...
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... Few large rivers remain free flowing (Limburg and Waldman 2009;Grill et al. 2019;Belletti et al. 2020) and the stressors associated with barriers and flow depletion have been identified as one of the greatest threats to river biodiversity worldwide (Vörösmarty et al. 2010;Hermoso et al. 2018). Barriers affect fish populations through a number of processes including decreased river connectivity Sun et al. 2023), modified river hydrology (Cushman 1985;Ntislidou et al. 2023), and changes in temperature (Lessard and Hayes 2003), nutrients (Ligon et al. 1995;Palinkas et al. 2019) and sediment loading (Petts 2009;Van Binh et al. 2020). ...
... Finally, it is important to consider a fragmentation tipping point that should not be trespassed to preserve natural metacommunity dynamics. These considerations should be incorporated into conservation and restoration plans, e.g. by integrating fragmentation indices, such as the ones developed here, into systematic planning tools (Hermoso et al., 2018). ...
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... Fishes are the most biodiverse organisms among vertebrates, with approximately 36 018 currently recognized species, among which 18 185 are freshwater fishes (Fricke et al., 2022). Despite the relevance of this group in ecological, economic, and social terms (Hermoso et al., 2018), freshwater fishes face the highest number of threats and are less known than other vertebrates (Darwall et al., 2011;Miqueleiz et al., 2020). Freshwater ecosystems are among the most threatened ecosystems worldwide; they are disappearing faster than terrestrial ecosystems (Reid et al., 2019). ...
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... Another key consideration in freshwater corridor mapping is the imperfect translatability of terrestrial graph-based approaches to freshwater networks of lakes, streams, and rivers (Hermoso et al., 2018;Nel et al., 2009). Topologically, lakes resemble nodes (i.e., patches) and streams and rivers resemble edges (i.e., corridors) in a traditional graph theory framework, but lakes, streams, or rivers may each represent a preferred habitat, with others functioning as marginal habitat or nonhabitat corridors depending on the taxa of interest (Heim et al., 2019;Jones, 2010;Tonn & Magnuson, 1982). ...
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Landscape changes resulting from human activities have resulted in range restrictions and substantial reductions in population sizes of most animals. The construction of hydroelectric dams has the same effect on species, but the study of their impact on semi-aquatic megafauna species is limited. We examined the response of a Hippopotamus amphibius population to the inundation of their habitat after the construction of a hydroelectric dam in Bui National Park, Ghana. We conducted an abundance and distribution survey of H. amphibius and compared the population size from our results with a pre-dam construction survey to determine changes in the abundance and distribution of the species within the focal area. Furthermore, we conducted a landscape analysis to estimate land cover before and after the dam construction and determined if the changes in land cover were related to the changes in population of H. amphibius. Finally, we conducted selected interviews to understand additional threats to the species perceived by the local population, as indirect effects of the dam construction. Contrary to our original hypothesis on an increase in the abundance of H. amphibius in the medium term (within a decade) through population recovery after the disturbances caused by the construction of the dam, we found lower numbers of H. amphibius after the dam construction, compared to the pre-dam results. The results indicated a reduced abundance from 209 H. amphibius individuals in 2003 to 64 H. amphibius individuals in 2021. Some individuals may have migrated to areas outside the reserve during damming when their habitat was disturbed. The amount of land covered by water increased from 0.41% before damming to 19.01% after damming, which flooded the resting and grazing sites of the H. amphibius. We conclude that the abundance and distribution of H. amphibius significantly and negatively decreased after the construction of the dam at the Bui National Park. We tentatively relate this decrease to the species’ semi aquatic ecology and sensitivity to changes in both the terrestrial and aquatic environment. The activities of human settlement encroachment such as poaching, as well as associated land cover changes, affected the stability of the H. amphibius population. However, as the species can survive in the medium to long term when effective management plans are implemented, we recommend H. amphibius to be given high conservation priorities by enhancing strict laws for habitat protection.
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Expert systems are fundamental tools in the fields of artificial intelligence and decision-making. In the context of the selection of areas for the location of dams, expert systems are especially relevant since they can integrate multiple variables for the detection of optimal locations that minimize environmental impacts and maximize the efficiency of the infrastructure. This research paper presents a new model of multicriteria and geospatial analysis (M-SALD). M-SALD is an expert system structured in three phases that can select from a set of areas the most suitable for the possible location of dams. In addition, it integrates the processes of multicriteria analysis and geospatial analysis, allowing multiple factors to be considered simultaneously, considering the spatial location of the data and the interaction between them. The model is applied to a case study in which a total of 29 watersheds (alternatives) were evaluated, considering 4 criteria and 25 sub-criteria. As a result of the application, it is evident that the model allows for the expansion of the number of possible factors, parameters, and alternatives to be evaluated, reducing the inconsistency from 80 to 20%. It eliminates the subjective evaluation performed by the experts during the weighing of the alternatives and reduces by up to 22% the number of candidate points (12,591) evaluated on the rivers. To obtain the results, the possible scenarios of hydrological development were considered, including promising areas to ensure the balance of water resources.
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Introduction: Although freshwater ecosystems encompass 12% of all known species, their study has achieved less progress in systematic conservation planning exercises compared with terrestrial and marine ecosystems. Moreover, little attention has been given to ecosystem services and cultural and spiritual values, which are pivotal in the long-term preservation of freshwater ecosystems. Conservation, restoration, and sustainable management actions within freshwater systems are currently addressed individually, underscoring the necessity of comprehensive methodological frameworks that holistically address the questions of where and how to conserve while integrating ecosystem services and cultural factors as conservation values. Methods: We propose a new methodological framework for the conservation of freshwater ecosystems that incorporates these elements and fulfills six prioritization criteria: 1) representativeness, 2) integrity, 3) importance, 4) rarity, 5) complementarity, and 6) connectivity. To illustrate the application of this approach, we conducted a regional study in the Caquetá River basin in Colombia. Results: By applying our methodological framework, we demonstrated that the Caquetá River basin hosts 518 distinct freshwater groups with unique characteristics that contribute to the maintenance of ecosystems and the preservation of their inherent values. Additionally, our analysis revealed that protection is the most effective conservation strategy for 77.4% of the Caquetá River basin, whereas restoration and sustainable management are suitable for 4.7% and 17.9% of the basin, respectively. The prioritized portfolio for the Caquetá River basin encompasses 80.1% of all freshwater groups, effectively meeting The Nature Conservancy’s proposed conservation objectives. Conclusion: This novel methodological framework provides a pragmatic approach to systematic conservation planning and answers the questions of both where and how to conserve.
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The ability of existing protected areas (PAs) to conserve freshwater species and ecosystems has been little investigated. In this study the freshwater conservation potential of PAs was evaluated based on their geospatial attributes and spatial relationship to threats. Specifically, the following questions were addressed: (a) to what extent, if any, do PA drainage network location and size affect the potential of PAs to conserve freshwater species and habitats within them?; (b) how are the factors that limit or promote conservation potential distributed in relation to PAs across a region?; and (c) what are the broader implications for how PAs can be designed and managed to contribute to freshwater conservation around the world? Eight factors that affect freshwater conservation potential for 297 PAs within the Tennessee and Cumberland River Basins (US) were analysed. Four of these attributes (connectivity, impervious surface area, agricultural land cover, and upstream storage) showed enough variation across PAs such that the effect of PA size, drainage network position, and their interaction on those attributes, was able to be modelled. The results support the hypothesis that PA drainage network location and size affect freshwater conservation potential of PAs. Both have a statistically significant effect on each of the four conservation potential attributes, either as a main effect, or through an interaction, although the direction of these relationships is not always intuitive. Of the factors that limit or promote conservation potential, PAs appear to be most often affected by land conversion to agriculture and a loss of connectivity. This study underscores the importance of PA managers understanding key internal and external threats so that they can take mitigating or minimizing action, and the need to define PA locations and boundaries within a larger basin context. Copyright © 2016 John Wiley & Sons, Ltd.
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1. Declaring protected areas (PAs) stands out as one of the main conservation strategies worldwide and there are clear commitments to expand their extent under the auspices of the Convention on Biological Diversity (CBD; Aichi targets for 2020). This conservation strategy has also received increasing attention in a freshwater context in the last two decades. 2. Despite increasing conservation efforts, the effectiveness of PAs for freshwater purposes is questioned and freshwater biodiversity continues to decline. There are many reasons for this poor effectiveness: a lack of consideration of freshwater needs when designing and declaring protected areas, fewer resources devoted to freshwater conservation management than to other actions, and poor understanding of complex management problems beyond the limits of the protected area. 3. This supplement compiles some examples from around the world on implementing and managing PAs, assessing their effectiveness, and demonstrating their important role not only in preserving biodiversity but also human well‐being and in meeting future challenges to achieve the CBD targets for freshwater biodiversity. 4. Here the challenges of establishing effective PAs for freshwater biodiversity in a rapidly changing world are reviewed. We advocate better monitoring programmes to assess the effectiveness of PAs for freshwater biodiversity, in which the unique characteristics of freshwater systems, such as the important role of connectivity and the close links with the rest of the landscape they drain, are considered. 5. There are new conservation opportunities to enhance the value of PAs for freshwater biodiversity under the new conservation paradigm of ‘people and nature’. The imperative of finding solutions that generate co‐benefits alongside biodiversity conservation, and the clear reliance of human communities on freshwater services, has created an environment that may be more favourable to PAs focused in whole or part on fresh waters. Copyright © 2016 John Wiley & Sons, Ltd.
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This chapter provides a general description of transboundary issues related to international watercourses, with a focus on situations involving EU members. The legal and institutional frameworks are briefly described and the historic evolution and current situation reviewed for the Rhine, the Danube, and the main Portuguese-Spanish rivers. There is an established tradition in Europe of bilateral and multilateral agreements and conventions on international water problems. The rapid evolution of environmental management concepts at the international level will have a clear impact on the approach taken by the international community with respect to international rivers. Sustainable development, shared responsibility, hydrodiplomacy, subsidiarity, epistemic communities, and public involvement are some of the key words. This chapter argues that global agreements dealing with all aspects of water resources management should be put under a common general framework, and that the levels of planning, management, and operation should be explicitly addressed in the specific agreements. This is essential to achieve an adequate balance and integration between the social, environmental, technical, legal and institutional dimensions of the existing problems.