Article

Relative Stereochemistry and Absolute Configuration of Farinosin, a Eudesmanolide From Encelia farinosa

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Abstract

The naturally occurring eudesmanolide farinosin () is now fully characterized for the first time despite its original isolation almost half a century ago. The early assumed relative stereochemistry and absolute configuration were confirmed by vibrational circular dichroism together with evaluation of the Hooft X-ray parameters. The molecular conformation is very similar in the gas stage and in the solid state. Chirality 00:000-000, 2016. © 2016 Wiley Periodicals, Inc.

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... The natural occurring eudesmanolide farinosin (4), isolated from Encelia farinosa, was fully characterized by spectral means in a recent study [1] despite its original isolation almost half a century ago. [2,3] Over the years, the compound showed relevant biological activities, as follows from studies on its antimicrobial effect [4] and on chemical ecology. ...
... For the distinction of the individual hydrogen atoms of the C-14 and C-14 0 methylene groups and the assignment of the hydrogen coupling constants of 1, we resorted to the PERCH v.2011.1 software [20][21][22][23] (PERCH Solutions Ltd., Kuopio, Finland), as done previously for farinosin (4). [1] For this purpose, the 750 MHz FID was imported into the preparation module of the PERCH shell, Fourier transformed, and phase and baseline corrected, and peak picking and integration were performed. The most stable molecular conformer of 1 was calculated in the molecular modeling portion of wileyonlinelibrary.com/journal/mrc the software and used to predict the initial calculated spectrum. ...
... The most stable molecular conformer of 1 was calculated in the molecular modeling portion of wileyonlinelibrary.com/journal/mrc the software and used to predict the initial calculated spectrum. For this purpose, all just determined chemical shifts of 1, as well as the C-1/C-2 and the cyclohexane 1 H-1 H coupling constant values, including the J 1,6α , J 9α,15 , J 1 0 ,6 0 α , and J 9 0 α,15 0 values of farinosin (4) [1] were manually fed into the table of the graphical spectral parameter editor of the PERCH software and then submitted to the iterator module of the software, by using the total-line-shape fitting method, which allowed to obtain an initial calculated spectrum. For the diastereotopic hydrogen atoms of the C-14 and C-14 0 methylene groups, the assignments were interchanged in all possible combinations, that is those of one methylene group, those of the other methylene group, and finally those of both methylene groups at once to know which total-line-shape fitting analysis gave the lowest root mean square (RMS). ...
Article
The structure of the dimeric eudesmanolide hydroxy-bis-dihydrofarinosin (1) from Encelia farinosa followed after contrasting their 1H and 13C NMR spectra with those of encelin (6), hydroxy-bis-dihydroencelin (3), and farinosin (4). Structure 1 was verified by single crystal X-ray diffraction analysis, which further provided the streochemistry of the hydroxy group at C-4. Comparison of the experimental vibrational circular dichroism spectrum of its derived diacetate 2 with that calculated by DFT provided the absolute configuration, which resulted the same as that of its biogenetic precursor 4. Evaluation of several chemical shits differences between the two eudesmanolide fragments of 1 and 3 allows also ascertaining the yet not reported absolute configuration of the C-4 stereogenic center of 3.
... The early assumed relative stereochemistry and AC were confirmed by VCD together with evaluation of the Hooft X-ray parameters. 43 In addition, the structure of hydroxy-bisdihydrofarinosin (58), from the same plant, was verified by single crystal X-ray diffraction. The AC of derived diacetates 59 and 60 ( Figure 14) followed from the corresponding VCD studies. ...
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Full-text available
Although demonstrated in 1975, vibrational circular dichroism (VCD) finally started to popularize during this century as a reliable tool to determine the absolute configuration (AC) of organic molecules. This research field continues to be a very dynamic one, in particular for the study of natural products which are a unlimited source of chiral molecules. It therefore turns of interest to summarize the accomplishments published in recent years and to comment on some eventual difficulties that emerged in rare cases to complete the AC determination task. Therefore the aim of this review is to update VCD results for the AC assignment of natural products published from 2015 to 2019, a period in which VCD was reported in some 126 publications involving almost 300 molecules. They are organized according the type of studied metabolite allowing an easily search. The molecules correspond to 28 monoterpenes concerning 17 papers, to 42 sesquiterpenes in 14 papers, to 51 diterpenes in 19 publications, to 5 other terpenoids in three papers, to 48 aromatic molecules in 15 reports, to 20 polyketides in 10 publications, to 27 miscellaneous formulas also in 10 papers, and to 76 nitrogen containing compounds, which include alkaloids and their synthetic analogs, in 38 articles. The landscape of reviewed molecules is quite wide as it goes from simple monoterpenes, like borneol or camphor, to very relevant biological molecules like the alkaloid cocaine or tadalafil samples to distinguish genuine and counterfeit Cialis ® . In addition, 5 natural products and a simple derivative published outside the reviewed period, were used to illustrate some aspects of density functional theory calculations.
... In turn, irradiation of the H-10 methyl signal at δ 1.85 changed various multiplicities in the spectrum, and therefore to completely define the overall spin system it was decided to evaluate it using the PERCH v. 2011.1 software 16 (PERCH Solutions, Kuopio, Finland) as we have done for other terpenoids. 17,18 The methodology used for the PERCH evaluation of the spin system of 3 is similar to that recently described for hydroxy-bis-farinosin. 19 Thus, on the one hand, the 300 MHz 1 H NMR FID data were imported into the preparation module of the PERCH shell, followed by Fourier transformation, phase and baseline correction, peak picking, and integration. ...
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The VCD spectrum of the monoterpene (-)-myrtenal (1) was compared with theoretical spectra using ab initio density functional theory (DFT) calculations at the B3LYP/6-31G(d,p), B3LYP/6-31G+(d,p), B3LYP/6-311G+(d,p), B3LYP/DGDZVP, and B3PW91/DGTZVP levels of theory. Conformational analysis of 1 indicated that the lowest energy conformer was s-trans-C2-C10, which contributes more than 98.5% to the total conformational population regardless of the employed level of theory. The use of a recently developed confidence level algorithm demonstrated that VCD spectra calculated for the main conformer, using the indicated hybrid functionals and basis set, gave no significant changes, from where it follows that B3LYP/DGDZVP calculations provide a superior balance between computer cost and VCD spectral accuracy. The DGDZVP basis set demanded around a quarter the time than the 6-311G+(d,p) basis set while providing similar results. The spectral comparison also provided evidence that the levorotatory enantiomer of myrtenal has the 1R absolute configuration.
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The impact of acidic deposition on interactions between the plant Encelia farinosa and the herbivorous beetle Trirhabda geminata (Chrysomelidae) was determined under greenhouse conditions. Acidic fogs (pH 2.75) did not significantly affect the overall foliar concentrations of water or soluble protein as compared with control fogs (pH 5.6). Nonetheless, E. farinosa foliage was altered by exposure to three 3-h acidic fogs such that growth and biomass gain by T. geminata increased by more than 30% as compared to beetles feeding on control-fogged plants. Thus, previous indications that changes in soluble proteins or water content were responsible for increased biomass gain and growth of T. geminata cannot be substantiated by this study. Additionally, changes in the plant defensive chemistry were not responsible for increased herbivore growth, as farinosin, encecalin, and euparin foliar concentrations did not vary significantly between fog treatments. Significant increases in CO2 assimilation rates of E. farinosa exposed to acidic fogs were documented at 3, 7, and 21 days following treatment, suggesting that carbohydrate-based products of increased plant metabolism may have played a role (e.g. soluble carbohydrates). However, the key factors responsible for increasing herbivore performance on acidic-fogged E. farinosa remain largely unknown.
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