Rouge or colloidal iron oxide that is present in pharmaceutical water system, poses a significant challenge in moving total organic carbon (TOC) from a lab-based release to online release. Rogue deposition can alter online TOC analyzer performance within months of installation by changing cell constants and blocking ultraviolet light of quartz oxidation cells. When UV light is blocked, oxidation of organics to carbon dioxide is inhibited that leads to underreporting of TOC, making oxidation and analysis times longer than the expected time in the water sample. Also, analyzers that use membrane technology to separate carbon dioxide from the sample matrix are at greater risk because of colloidal fouling and reduced carbon dioxide efficiency. Reduced membrane performance can lead to inaccuracy, drift, and instability. Three strategies can help mitigate such effects of rouge. These include dynamic endpoint detection, rouge detection sensors and oxidation cell maintenance kits.