In rivers, the phenomenon of flow separation past obstacles often gives rise to large-scale coherent structures. This study focuses on quasi-2d coherent structures associated with shallow flow separation (vortex shedding). New insights about the physical mechanism governing vortex shedding have been obtained from largescale Particle Image Velocimetry (PIV) experiments on a Shallow Lateral Expansion (SLE) with a variable inflow width. Analysis of the acquired data stresses the crucial role of the secondary circulation cell, which is often present in shallow separation geometries. A sufficiently developed secondary circulation cell is significantly contributing to vortex shedding. Moreover, the interaction between primary and secondary circulation cells causes a "scale jump" in the horizontal length scale of the shed vortices. An analysis of Reynolds' stresses and the downstream development of conditional averaged eddies does clearly show this jump. Since the scale jump is essentially due to interaction of discrete horizontal eddies, 3D Large Eddy Simulations (LES) are performed in analogy with the measured PIV geometries. The obtained LES data will be used to develop a depth-averaged flow model that will reproduce the discrete horizontal eddy interaction in an accurate way, thus enabling researchers and engineers to predict vortex shedding in river geometries.