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Coffee industrial waste as a natural source of bioactive compounds with
antibacterial and antifungal activities
C. Sousa1, C. Gabriel1, F. Cerqueira1, M.C. Manso1,2 and A.F. Vinha*,1,2
1 FP-ENAS (UFP Energy, Environment and Health Research Unit), CEBIMED (Biomedical Research Centre), University
Fernando Pessoa, Praça 9 de Abril, 349, 4249-004 Porto, Portugal
2 REQUIMTE/LAVQ/Dep. of Chemical Science, Faculty of Pharmacy, University of Porto, Rua Jorge Viterbo Ferreira,
228, 4050-313 Porto, Portugal
Coffee is one of the most popular and consumed beverages in the world, which leads to a high contents of solid residue
known as spent coffee grounds (SCG). As is known, coffee beans contain several classes of health related chemicals,
including phenolic compounds, melanoidins, diterpenes, xanthines and carotenoids which are associated with therapeutic
and pharmaceutical effects, due to antimicrobial, antioxidant, anti-infectious and antitumour activities. Considering that
this coffee industrial waste has no commercial value and are currently disposed as a solid waste or employed as fertilizers,
we intend to highlight the use of SCG as a raw material with potential interest to the food and pharmaceutical industries.
Moreover, this work seems to be valuable to promote the use of SCG as natural and an inexpensive food supplements or
pharmaceutical additive. The phytochemical compounds content among the crude aqueous extracts of SCG followed this
order: phenolics > flavonoids > carotenoids (mg/ g dry waste), respectively. Caffeine content found in SCG was ~ 0.82 g/
100 g dry waste, 70 % lower than coffee roasting beans. Coffee ground extracts showed inhibition to S. aureus and E. coli
growth for concentrations of 1.0 mg/ mL and a stronger inhibition was also observed against C. albicans, C. krusei and C.
parapsilosis growth using lower concentration (0.5 mg/ mL).
Keywords: Spent coffee grounds; Aqueous extracts; Natural antioxidants; Antibacterial activity; Antifungal activity.
1. Introduction
Coffee is a rich source of dietary antioxidants, and this property, coupled with the fact that it is one of the world’s most
popular beverages, has led to the understanding that coffee is a major contributor to dietary antioxidant intake. Natural
bioactive compounds from coffee industry by-products have been receiving increasing attention, having in view the
sustainability of the processes [1,2]. Spent coffee grounds (SCG) are a by-product generated during espresso beverages
or soluble coffee production. Food by-products are focus of great interest in scientific community, once they may
provide natural antioxidant and antimicrobial substances. In addition, valorization and re-use of food by-products
minimizes industry wastes, with higher impact in sustainability and economic concepts. Coffea Arabica (Arabica) and
Coffea canephora var. robusta (Robusta) are the two main species of the genus Coffea usually cultivated for
commercial production. Nowadays, Arabica accounts approximately 75 % of the world production and, is considered to
be favored to Robusta due to its milder and more flavorful taste, while Robusta is mostly used by the instant coffee
industry for the manufacturing of soluble coffee [3].
It is acknowledged that coffee beans contain several classes of natural health chemicals, such as phenolics,
melanoidis, diterpenes, xanthines, and vitamin precursors [4,5]. Considering their health beneficial, several studies
reported that the consumption of phenolic acids and flavonoids provide in vivo protection against free radical damage
and reduce the risk of degenerative diseases usually associated with oxidative stress [6,7]. Caffeine, the major xanthine
presented in coffee beans, is the most studied coffee component due of its well-established psychoactive effects and
promotion of energy metabolism [8]. Other compounds also provide health benefits, including carotenoids and
chlorogenic acids, which are formed by esterification of one molecule of quinic acid and one to three molecules of
trans-hydroxycinnamic acids, mainly caffeic, ferulic, and p-coumaric. In addition, the main chlorogenic acids present in
coffee are highly bioavailable, being easily absorbed and metabolized throughout the gastrointestinal tract [9].
Moreover, the indiscriminate use of antimicrobial agents resulted in the emergence of drug-resistant bacteria, fungi
and viruses. Various populations in developing countries are using natural plant products against infectious diseases by
accidental discovery, and trust in the benefit of their use. To overcome the increased resistance of pathogenic microbes,
researchers are using traditional knowledge as source of development of new drugs with high antimicrobiotic potential.
The use of phytochemicals as natural antimicrobial agents, commonly called “biocides”, is gaining popularity. There is
a growing interest among the medical proprieties of natural resources in terms of antibacterial activity. In the ongoing
search for better antibacterial compounds, plant-derived products are gaining ground [10]. The in vitro antibacterial
activity of coffee beans against Gram-positive and Gram-negative bacteria has also been reported. Furthermore,
different natural active chemicals in coffee of low molecular weight such as trigonelline, caffeic acid and
5-caffeoylquinic acid have shown activity against the growth of Legionella pneumophila, Enterobacteria and S. mutans
[11,12].
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In view of these findings, the present study was undertaken to further assess the potential applications as a way of
adding value to SCG extracts from Arabica and Robusta species by the recovery of total phenolics, flavonoids,
carotenoids and caffeine quantification. Additionally, this study aimed to investigating the antibacterial efficacy and
antifungal activity of crude aqueous of SCG to promote the use of this coffee by-product as a natural and an
inexpensive food supplements or pharmaceutical additive.
2. Chemical characterization, in vitro antioxidant activity and antibacterial and
antifungal activities of spent coffee grounds
2.1 Phytochemicals composition
Fine grinded spent coffee grounds Veracruz® constituted by ∼ 80 % Arabica and ∼ 20 % Robusta coffee beans (Coffea
canephora var. robusta and Coffea arabica, respectively), 100 % Guatemala Los Volcanes Arabica Sanzala® and 100
% Uganda SCR18 Robusta Sanzala® were obtained by an Elen® express machine ma/ c/ 3 gr, gently provided by a
local commercial source (Café Vera Cruz). Spent coffee grounds were sterilized in an autoclave JSM 250 at 134 °C
during 40 min, until 5 % moisture content and stored in airtight bottles for further analysis. For the analysis of total
phenolics and flavonoids, a simple aqueous extraction was conducted according to Costa et al. [1]. Briefly, 5 g of
ground sample and 50 mL of 100 % water was mixture (600 rpm) at room temperature for 60 min. The final extracts
were filtered and stored at -25 ºC to prior analysis. Total phenolics contents (TPC) of spent coffee grounds extracts were
determined spectrophotometrically according to a modified method of Costa et al. [1]. Briefly, 500 μL of each extract
were mixed with 2.5 mL of the Folin-Ciocalteu reagent (1:10) and 2 mL of a sodium carbonate solution (7.5 %). After 1
h incubation the absorbance was measured at 765 nm and results were expressed as mg of gallic acid equivalents
(GAE)/ g of sample.
Total flavonoids contents were determined according to Barroso et al. [13]. Aliquots of 1 mL of each extract were
mixed with 4 mL of distilled water and 300 μL of 25% sodium nitrite. After 5 min, 300 μL of 10% AlCl3 were added
and 1 min after 2 mL of sodium hydroxide (1 M) and 2.4 mL of ultrapure water. The absorbance was recorded at 510
nm and final results were expressed as mg catechin equivalents (CE)/ g of sample.
Chlorophyll a, chlorophyll b, β-carotene and lycopene were determined, in triplicate, according to Vinha et al. [14].
Briefly, samples were extracted with acetone/hexane (2:3, v/v), and supernatants absorbance were measured at 453,
505, 645, and 663 nm. The contents of chlorophyll a, chlorophyll b, β-carotene and lycopene were calculated according
to the following equations: Chlorophyll a (mg/ g) = 0.999A663 – 0.0989A645; Clorophyll b (mg/ g) = -0.328A663 +
1.77A645; Lycopene (mg/ g) = -0.0458A663 + 0.204A645 + 0.372A505 – 0.0806A453; -Carotene (mg/ g) = 0.216A663 –
1.22A645 – 0.304A505 + 0.0452A453.
For caffeine extraction coffee spent grounds (5 g) were stirred with ebullition water (150 mL) for 30 minutes. The
resulting mixture was filtered and extracted with chloroform: isopropanol (3:1, w/w) (4 x 50 mL). The organic extract
was dried with CaCl2, filtered and evaporated to dryness [15]. The same procedure was used for caffeine determination
in commercial ∼ 80 % Arabica and ∼ 20 % Robusta Veracruz® fresh grounds. The resulting extracts were quantitatively
dissolved in ultra-pure H2O and caffeine was quantified by HPLC with an UV detector (214 nm), using benzoic acid as
internal standard in the same concentration as the standards [16]. Standard solutions of 20, 40, 60, 80, 100, 120 and 160
mg/ L in caffeine and 100 mg/ L in benzoic acid in ultra-pure H2O were prepared. An aliquot (50 L) of each sample
was injected and its concentration was determined using linear regression analysis. Standards and samples were
measured in triplicate and the mean peak height values were used for data acquisition. Identification of caffeine and
benzoic acid was performed by comparison with retention time of the respective standards. Areas under the curve were
calculated and calibration curves were obtained by plotting area caffeine / area benzoic acid versus caffeine
concentration.
2.1.1 Antioxidant activity
The free radical scavenging activity of the samples was measured in vitro by 2,2 - diphenyl-1-picrylhydrazyl (DPPH)
assay according to the same author described earlier [14]. Briefly, 14 μL of diluted extract of each sample (1:10) were
mixed with 186 μL of a freshly prepared DPPH• solution (9.3×105 mol/ L in ethanol). The decrease of the DPPH• was
measured in equal time intervals of 10 min by monitoring the decrease of absorption at 525 min, in order to observe the
kinetics reaction. The reaction endpoint was attained in 40 min. A calibration curve was prepared with trolox (10–2000
μg/ L, r = 0.9995) and DPPH• scavenging activity was expressed as mg of trolox equivalents (TE)/ g of sample.
2.2 Antibacterial and antifungal activities of spent coffee grounds
SCG antimicrobial activity was tested against Gram positive (S. aureus) and Gram negative (E.coli and P. aeruginosa)
bacteria and yeasts (Candida sp.) since treatment of infectious diseases is, from ever, a challenge to the science. Besides
the number and diversity of antimicrobial drugs available, microorganisms were throughout the times capable of
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developing resistance mechanisms to the therapeutic options as Methicillin-resistant Staphylococcus aureus (MRSA),
Vancomycin intermediate Staphylococcus (VISA), Vancomycin-resistant Staphylococcus aureus (VRSA) or extended-
spectrum -lactamases (ESBLs) producers [17].
Antifungal resistance is also becoming a problem. Candida albicans is the major cause of candidosis, but C. krusey
(intrinsically resistant to fluconazole) and C. parapsilosis causes medically important infections, difficult to treat [18].
2.2.1 Chemicals, Reagents and Microorganisms
Mueller-Hinton II (MH II) broth and Sabouraud dextrose agar (SDA) were from Liofilchem (Italy). Microorganisms
stocks were kept at -20 ºC and cultures at 4 ºC. Bacteria (E. coli ATCC25922, P. aeruginosa ATCC27853, and S.
aureus ATCC29213) and yeasts (C. albicans ATCC 10231, C. krusei ATCC6258 and C. parapsilosis ATCC2209) were
cultured in MH II agar and SDA, respectively, 24 h just prior to the assays.
2.2.2 Antibacterial and antifungal activity assays
The lyophilized spent coffee ground extracts (commercial mixture) were solubilized in sterilized distilled water (10 mg/
mL) and stock solutions kept at -20ºC before analysis.
Minimal inhibitory concentration (MIC) of the extract was determined using the CLSI Reference Microdilution
Method for Antimicrobial Susceptibility Testing for Aerobic Bacteria M7-A6 [19]. Briefly, serial dilutions (1:2; ranging
from 1.0 to 0.25 mg/ mL) of the stock extract on MH II broth were added to the test bacteria (5 x 105 UFC/ mL) and
were incubated for 24 h at 37 ºC. Positive controls (microorganism in culture media), negative controls (culture media),
and extract control (extract in culture media) were included in all the experiments. MIC was defined as the lowest
concentration that completely inhibited bacterial growth by visual lecture.
MIC of the extract was determined using the CLSI Reference Method for Broth Dilution Antifungal Susceptibility
Testing of Yeasts M27-A3 [20]. Briefly, serial dilutions (1:2; ranging from 1.0 to 0.25 mg/ mL) of stock extract on
RPMI-1640 broth medium supplemented with MOPS were added to the test yeast (0.5-2.5 x 103 CFU/ mL) and were
incubated for 48 h at 37 ºC. Positive controls (microorganism in culture media), negative controls (culture media), and
extract control (extract in culture media) were included in all the experiments. MIC was defined as the lowest
concentration that completely inhibited yeast growth by visual lecture.
3. Results and Discussion
Spent coffee grounds of the three samples were extracted with an environmentally friendly procedure (water) and
analyzed to evaluate the recovery of relevant natural antioxidants for further possible use as nutritional supplements,
foods, cosmetic additive, or for pharmaceutical applications. The phytochemical composition of the spent coffee
grounds extracts is given in Table 1, Table 3 and Figure 2.
Table 1 Phytochemical composition and in vitro antioxidant activity of the aqueous extracts obtained from three different coffee
grounds (100 % Arabica, 100 % Robusta, and commercial mixture: 80 % Arabica + 20 % Robusta).
Spent Coffee Grounds
*
Phytochemicals Arabica Robusta Commercial mixture
Phenolics 14.97±0.09
b
22.56±1.02a 11.04±0.17c
Flavonoids 2.12±0.04
b
3.49±0.46a 1.09±0.16c
Chlorophyll a 0.0494±0.002a 0.0280±0.001c 0.0393±0.002
b
Chlorophyll b 0.0873±0.004a 0.0042±0.000c 0.0653±0.004
b
Lycopene 0.0079±0.000
b
0.0011±0.000c 0.0258±0.001a
Antioxidant activity
81.57±2.32
b
88.16±1.16a 73.7±1.44c
*a,b,cDifferent letters stand for significant differences (p < 0.01) in mean value, according to the LSD post-hoc test (ANOVA).
Table 2 Correlation [r (p-value)] of the phytochemical composition and in vitro antioxidant activity of the aqueous extracts obtained
from three different coffee grounds (100% Arabica, 100% Robusta, and commercial mixture: 80 % Arabica + 20 % Robusta).
Flavonoids Chlorophyll a Chlorophyll b Lycopene Antioxidant activity
Phenolics 0.966 (<0.001) -0.847 (0.004) -0.819 (0.007) -0.900 (0.001) 0.941 (<0.001)
Flavonoids -0.773 (0.015) -0.747 (0.021) -0.919 (<0.001) 0.927 (<0.001)
Chlorophyll a 0.998 (<0.001) 0.552 (0.123) -0.698 (0.037)
Chlorophyll b 0.511 (0.160) -0.656 (0.055)
Lycopene -0.950 (<0.001)
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Fig. 1 Relation between the concentrations of bioactive
compounds ( stands for Lycopene (multiplied by a 1000
factor); stands for Phenolics and stands for Flavonoids.
Black, grey and white represents SCG commercial mixture,
SCG Arabica and SCG Robusta, respectively) and antioxidant
activity. Lines were used to show the tendency observed in the
relations between compounds and their antioxidant activity.
SCG is the main by-product of the brewing process and a potential source of bioactive compounds, mainly phenolic
acids easily extracted with water. Knowledge of the total content of phenolic compounds in spent coffee extracts is
crucial for their potential use as functional ingredients by the food and pharmaceutical industries. For comparison, the
commercial spent coffee grounds presented lower contents of total phenolics and flavonoids (11.04 mg GAE/ g, 1.09
mg CE/ g, respectively) than SCG coffee grounds of 100 % Arabica and 100 % Robusta extracts. However, antioxidant
activity showed significant differences (p < 0.001) in the 3 formulations, with the commercial mixture having the lowest
and Robusta the highest antioxidant activity (Table 1). The total phenolics and flavonoids were strongly and positive
correlated with the DPPH scavenging activity (r = 0.941, p < 0.001 and r = 0.927, p < 0.001, respectively, Table 2),
suggesting that an increase in phenolic and flavonoid compounds are mainly responsible for the increase in antioxidant
activity (Figure 1).
The antioxidant potential of plant extracts and pure compounds was measured using more than one in vitro assay,
once each of these assays is based on one feature of antioxidant activity, such as antiradical ability or to inhibit lipid
peroxidation. Carotenoids are known to be very efficient physical and chemical quenchers of singlet oxygen (1O2), as
well as potent scavengers of other reactive oxygen species (ROS), however, in the present study, regarding their
antioxidant activity, a different correlation was observed, showing an inverse significant correlation, with lycopene and
chlorophyll-a increase being strongly associated with a decrease in antioxidant activity (r = -0.950, p < 0.001 and r
= -0.698, p = 0.037, respectively, Table 2).
In addition to the compounds quantified in this work, other biologically active coffee components with potential
beneficial health effects are nicotinic acid, trigonelline, quinolinic acid, tannic acid, and pyrogallic acid [5]. However,
the presence of carotenoids in SCG can also be used as substrate for biotechnological, several applications in food
industry (food colorants, antioxidants, animal feed supplements) and also in cosmetics and pharmacy. Generally, the
market demand for carotenoids is expected to increase substantially, since those compounds exhibit significant
anti-carcinogenic activities of alternative high value product. Thus, beyond the direct relationship between phenolic
compounds and their antioxidant action, antioxidant properties such as reactive oxygen species (ROS) scavenging have
also been recently proposed for caffeine, the most abundant alkaloid present in coffee beans. Caffeine content was
analyzed by HPLC-UV and Figure 2 shows an illustrative chromatogram.
Fig. 2 Illustrative chromatogram of coffee grounds
extracts. The 1
st
peak correspond to caffeine and the
2
nd
to benzoic acid (used as internal standard).
Caffeine retention time was 2.2 min, while benzoic acid takes 3.6 min to separate (Figure 2). The equation of the
regression lines obtained was y = 0.0155x + 0.1865, being y the areas quotient and x the caffeine concentration.
Naturally, the coffee grounds obtained from different varieties of coffee will contain different amounts of caffeine
(Table 3). In this study that is demonstrated in the specific case of varieties C. Robusta and C. Arabica. Caffeine content
in commercial mixture SCG was 0.82 ± 0.14 % (m/m), while in the fresh grounds was 2.43 ± 0.48 %, contain with the
0
5
10
15
20
25
30
65 70 75 80 85 90 95
Concentration of bioacti ve compounds (mg/g)
Antioxidant activity using DPPH assay (micromol Trolox/g)
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humidity values of the samples. The results reveal that in the process of producing the so called “Espresso”
approximately 30 % of the caffeine remains on the coffee spent.
Table 3 Caffeine content in % (m/m) of the several coffee grounds studied (Commercial fresh grounds, 100 % Arabica SCG, 100 %
Robusta SCG, and commercial mixture 80 % Arabica + 20 % Robusta SCG).
Caffeine content, % (m/m)
Fresh grounds 2.43±0.48
Arabica SCG 0.30±0.01
Robusta SCG 1.14±0.01
Commercial mixture SCG 0.82±0.14
Comparing with other results previously published, we have obtained quantities for SCG caffeine similar to the
referred by Cruz et al. (2012) [21], and considering that coffee commercially more used in Portuguese coffee shops has
15-20 % Robusta and 80-85 % Arabica. They have obtained 194.0 to 787.7 mg caffeine/ 100 g (0.1940 % - 0.7877 %)
on the SCG collected in bars of Oporto city, using 50 mL of distilled water to extract 5 g SCG during 5 minutes, with
stirring and at boiling temperature [21]. Bravo et al. [22] have dried spent coffee, defatted with petroleum ether (1:11,
w/v) for 3 h at 60 °C in a Soxhlet extraction system, using 24 g of SCG with 400 mL of water in a filter coffeemaker
during approximately 6 min at 90 °C and referred ranges from 0.359 % for Arabica to 0.809 % for Robusta. Panusa et
al. (2013) [5] published 6.00 ± 0.05 mg/ g (0.600 %) (water extract) and almost the same value for EtOH/H2O (60:40)
(v/v) extract (5.99 ± 0.16 mg/ g ) for 2 g of dried SGC of coffee with 70 % Arabica, with 100 mL of the solvent, at 60
ºC, during 30 min.
The caffeine quantity differences can be explained by same factors: the ratio Arabica/Robusta, the extraction time,
the ratio between the volume of the solvent and the mass of the sample, the extraction temperature and the grind of the
coffee beans.
Spent coffee ground extracts showed to inhibit some Gram-positive and Gram-negative bacterial strains (Table 4). S.
aureus and E. coli growth was inhibited for concentrations of 1.0 mg/ mL. At that concentration, no inhibition was
observed for P. aeruginosa. A stronger inhibition of coffee ground extract was observed against Candida sp.. C.
albicans, C. krusei and C. parapsilosis growth was totally inhibited for concentration of 0.5 mg/ mL.
Table 4 Antibacterial and antifungal activity (MIC, minimal inhibitory concentration) of spent coffee ground extracts.
Microorganism strain MIC (mg/ mL)
Bacteria
S. aureus ATCC29213 1.0
E. coli ATCC25922 1.0
P. aeruginosa ATCC27853 >1.0
Yeast
C. albicans ATCC10231 0.5
C. krusei ATCC6258 0.5
C. parapsilosis ATCC22019 0.5
*Results are obtained from at least 2 to 3 independent experiments performed in duplicate.
Our results suggest that spent coffee ground extracts are potentially useful in cosmetic formulations, due to their
referred properties, including antifungal and antibacterial activities. The inclusion of those extracts on soaps or
formulations to be applied in superficial infections caused by microorganisms, as in acne or superficial candidosis,
could (i) improve the results of antimicrobial therapy, (ii) solve problems of antimicrobial resistance and (iii) improve
therapeutics adhesion, being (iv) cheaper and lowering the cost/benefit of therapeutics.
4. Conclusions
The coffee industry has experienced a constant growth and, as a consequence, large amounts of residues are generated
worldwide. One of the main coffee residues are spent coffee grounds (SCG), which are the solid residues obtained after
preparation of the coffee beverages. References to its use as organic fertilizer in domestic cultures, especially in
gardens, are common. However, scientific evidence of its effectiveness or even safety remains largely unknown.
Different attempts to valorize this waste stream of coffee industry were made. Coffee is known as valuable source of
biologically active phytochemicals such phenolic compounds and caffeine. New beneficial properties of the spent
coffee grounds are being continuously discovered. The water as solvent showed to be a good option for an efficient
extraction of bioactive compounds from SCG Additionally, SCG revealed to be a good source of antioxidant
compounds, showing a direct correlation with the antioxidant activity. The caffeine content quantified in our samples
may be used in pharmaceutical applications, depending on the site of action, dosage, and timing of drug exposure.
Furthermore, SCG presented an inibitory activity against S. aureus and E. coli. A stronger inhibition was also observed
against Candida sp. growth (C. albicans, C. Krusei and C. parapsilosis). This study allows us to understand whether the
residues generated during coffee brewing procedure, produced in large amounts in cafeterias and restaurants, or at
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domestic levels, can be considered as a source of natural antioxidants. These findings open up possibilities to evaluate
SCG chemicals as bioactive compounds in different food and pharmaceutical applications.
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