The use of vaccines in aquaculture is one of the widely accepted methods of preventing most pathogenic diseases. In warmwater aquaculture, various species of tilapia, Oreochromis spp., and the Asian seabass, Lates calcarifer are widely farmed in freshwater and brackishwater ponds and cages because of their high demand in the market both for local consumption and for export. However, farming of these fish species is hampered by the outbreaks of bacterial diseases that affect production and eventually revenues. This review provides updates on the different bacterial vaccines developed for these farmed fish. In tilapia, experimental trials have been done on the effectiveness of inactivated, attenuated and sub-unit vaccines against Streptococcus iniae, S. agalactiae, Vibrio spp., Aeromonas hydrophila, Edwardsiella tarda and Francisella asiatica. On the other hand, bacterial vaccines have been tested against Vibrio anguillarum in Asian seabass. The immune responses of the fish as a result of vaccination and the protective efficiency of these different vaccines are also discussed.