ArticlePDF Available

miR-15b and miR-21 as Circulating Biomarkers for Diagnosis of Glioma

Authors:

Abstract and Figures

Malignant gliomas are lethal primary intracranial tumors. To date, little information on the role of deregulated genes in gliomas have been identified. As the involvement of miRNAs in the carcinogenesis is well known, we carried out a pilot study to identify, as potential biomarkers, differentially expressed microRNAs in blood samples of patients affected by glioma. We studied the miRNAs’ expression, by means of microarray and Real-Time PCR, in 30 blood samples from glioma patients and in 82 blood samples of patients suffering from: (a) various neurological disorders (n=30), (b) primary B-lymphoma of the Central Nervous System (PCNSL, n=36) and (c) secondary brain metastases (n=16). By quantitative real time reverse-transcriptase polymerase chain reaction (qRT-PCR), we identified significantly increased levels of two candidate biomarkers, miR-15b and miR-21, in blood of patients affected by gliomas. ROC analysis of miR-15b biomarker levels allowed to differentiate patients with tumour from patients without glioma. Furthermore, combined expression analyses of miR15b and miR-21 distinguished between patients with and without glioma (90% sensitivity and 100% specificity). In addition, a decrement in the expression levels of miR-16 characterized glioblastomas compared to low grade and anaplastic gliomas. In conclusion, this pilot study suggest that it’s possible to identify the disease state by meaning miR-15b and miR-21 markers in blood, while miR-16 can be used to distinguish glioblastoma from other grade gliomas. They can potentially be used as biomarkers for non-invasive diagnosis of gliomas; further studies are mandatory to confirm our preliminary findings.
No caption available
… 
Content may be subject to copyright.
Send Ord ers for Reprints to reprints@benthamscience.ae
304 Current Genomics, 2015, 16, 304-311
miR-15b and miR-21 as Circulating Biomarkers for Diagnosis of Glioma
Pietro Ivo D’Urso1,#, Oscar Fernando D’Urso2,#, Cosimo Damiano Gianfreda3, Valeria Mezzolla4,*,
Carlo Storelli2 and Santo Marsigliante2
1Department of Neurosurgery, King’s College Hospital, London, UK; 2Department of Biological and
Environmental Sciences and Technologies (DISTEBA), Salento University, Lecce 73100, Italy;
3Neurosurgery Operative Unit, “V. Fazzi” Hospital 73100 Lecce, Italy; 4Institute of Sciences of Food
Productions, National Research Council, ISPA-CNR, Via Lecce-Monteroni, 73100 Lecce, Italy
Abstract: Malignant gliomas are lethal primary intracranial tumors. To date, little information on the
role of deregulated genes in gliomas have been identified. As the involvement of miRNAs in the carcino-
genesis is well known, we carried out a pilot study to identify, as potential biomarkers, differentially ex-
pressed microRNAs in blood samples of patients affected by glioma. We studied the miRNAs’ expres-
sion, by means of microarray and Real-Time PCR, in 30 blood samples from glioma patients and in 82
blood samples of patients suffering from: (a) various neurological disorders (n=30), (b) primary B-lymphoma of the Central
Nervous System (PCNSL, n=36) and (c) secondary brain metastases (n=16). By quantitative real time reverse-transcriptase
polymerase chain reaction (qRT-PCR), we identified significantly increased levels of two candidate biomarkers, miR-15b and
miR-21, in blood of patients affected by gliomas. ROC analysis of miR-15b biomarker levels allowed to differentiate patients
with tumour from patients without glioma. Furthermore, combined expression analyses of miR15b and miR-21 distinguished
between patients with and without glioma (90% sensitivity and 100% specificity). In addition, a decrement in the expression
levels of miR-16 characterized glioblastomas compared to low grade and anaplastic gliomas. In conclusion, this pilot study
suggest that it’s possible to identify the disease state by meaning miR-15b and miR-21 markers in blood, while miR-16 can
be used to distinguish glioblastoma from other grade gliomas. They can potentially be used as biomarkers for non-invasive
diagnosis of gliomas; further studies are mandatory to confirm our preliminary findings.
Keywords: Biomarkers, Blood, Diagnosis, Glioma, Microarrays, miRNAs.
INTRODUCTION
Glioma is the most common primary Central Nervous
System (CNS) tumour, including about 50% of primary
brain cancers in adults. They origin ate from the neuroepithe-
lial glial cells and th e main malignancy of these tumors is
linked to their diffusely infiltrative growth pattern, strong
angiogenesis and an intrinsic resistance to chemotherapy and
radiotherapy. These aspects make gliomas extremely diffi-
cult to treat. Although new therapeutic care and supportive
strategies, the median survival of glioblastoma multiforme
has not significantly changed over the past decade, being
remaining limited to 12–15 months [1]. Even if with the cur-
rent neuroradiological imaging a high degree of detection
due to suspected presence can be reached, the gold standard
for the diagnosis remains the histology. miRNAs are small
noncoding RNA that can contribute to tumour pathogenesis
and progression, as suggested by their different levels of
expression in normal tissues and cancers [2-4]. A large por-
tion of overexpressed miRNAs was identified in many hu-
man solid tumours, such as colon, breast, prostate, lung,
stomach and pancreatic cancers, but also in many circulating
*Address correspondence to this author at the Institute of Sciences of Food
Productions, National Research Council, ISPA-CNR, Via Lecce-Monteroni,
73100 Lecce, Italy; Tel: 0832.422609; Fax: 0832.422620;
E-mail: valeria.mezzolla@ispa.cnr.it
#These authors contributed equally.
body fluids. In blood, circulating miRNAs are abundant,
very stable and a fraction of circulating miRNAs, due to en-
capsulation in an envelop made by proteins and/or lipids, is
resistant to plasma RNAses. Furthermore, miRNAs detected
in circulating body fluids are relatively stable, highly acces-
sible, not invasive and these are important prerequisites for
reliable clinical biomarkers [5, 6]. Circulating miRNAs in
the blood of tumour patients can be released during tissue
injury or by active delivery and could play the same impor-
tant role as miRNAs in tissues. However, the mechanisms of
delivery and biological function of extracellular miRNAs
remain unknown [7]. The microRNA content of cancer cell-
derived exosomes is correlated to the microRNA level in the
primary tumor in ovarian and lung cancer. miRNAs have
been identified in exosomes and microvesicles derived from
several tissues [6], such as human and mouse mast cells [8],
glioblastoma tumors [9], plasma [10], saliva [11] and urine
[12]. For example, miR-150 biomarker, involved in the ex-
pression of c-Myb gene, is secreted in microvesicles from
human blood cells or cultured THP-1 cells and taken up by
HMEC-1 microvascular endothelial cells [13]. It has been
demonstrated with several techniques that different tumour
types have distinct intracellular miRNA profiles [14-18] and
specific expression profiles can distinguish different clinical
pathways, as for primary from secondary glioblastoma types
[19]. In some cases, the detection of circulating miRNAs has
been linked to occasional lysis of blood cells during sample
1875-5488/15 $58.00+.00 ©2015 Bentham Science Publishers
Identification of microRNAs in the Blood for the Diagnosis of Glioma Current Genomics, 2015, Vol. 16, No. 5 305
preparation [2]. To date, literature data report few circulating
miRNAs useful for the detection and risk stratification of
gliomas, as serum miR-128, whose expression decreased in
glioma preoperative serum compared with normal controls
and meningioma serum samples; furthermore, low miR-128
levels in serum and tissue were significantly correlated with
high pathological grade [20]. In order to early detect sys-
temic cancer, to predict tumor progression or to check the
response to therapy, it was evaluated using of cancer-derived
circulating DNA [21-24], as miRNAs in cerebrospinal fluid
samples from patients with glioma [25]. The involvement of
miRNAs in the carcinogenesis is well known and the possi-
bility to detect their levels in blood samples is appealing for
early diagnosis and for monitoring patients. For that reason,
we carried out a pilot study with the aim of identify in blood
samples of patients affected by glioma differentially ex-
pressed microRNAs as potential novel glioma biomarkers.
PATIENTS AND METHODS
Serum Samples and Clinical Information
In this study, a total of 112 plasma samples were ana-
lyzed, 30 plasma samples of patients with glioma, 30 from
patients with various neurological pathologies, 36 from pa-
tients with PCNSL and 16 from individuals with brain me-
tastases or leptomeningeal secondary involvement originated
from various tumours. RNA was extracted from sera pre-
pared by centrifugation starting from 10 ml of whole blood,
obtained at the time of surgical treatment. All whole blood
and serum samples were used with the consent of the pa-
tients.
RNA Extraction, Reverse-Transcription and qRT-PCR
Total RNA was extracted using TRIZOLTM reagent (Invi-
trogen) and microRNA was isolated using a PureLink™
miRNA Isolation Kit (Invitrogen), following manufacturer’s
instructions. The RNA concentration was determined by
NanoDrop ND-3300 spectrophotometer and TaqMan
miRNA assays (Applied Biosystems) quantified miRNA
levels [26]. Briefly, 10 L cointaining total RNA was used in
reverse-transcription reactions (16°C for 30 min, 42°C for 30
min, 85°C for 5 min, followed by 4°C). Real-time PCR was
carried out using a 7500 Real-Time PCR System, with fol-
lowing cycling conditions: 95°C for 10 min, 40 cycles of 15
s at 95°C and 60 s at 60°C. The 7500 SDS system software
(version 1.2.3; Applied Biosystems) was used to transform
fluorescent data of each sample, run in duplicate, into cycle
threshold (Ct) measurements. Mean Ct values and standard
deviations were calculated for total miRNAs and the amount
of target miRNA was normalized respect to the amount of
miR-24, selected from several control miRNAs, as follow-
ing: Ct = CtmiR - CtmiR- 24. Relative Expression Lev-
els (REL) were reported as 2- Ct.
Microarray Fabrication, miRNA Extraction, Labelling
and Hybridisation
The epoxy microscope glass slides (Sigma), activated
with glycidyloxipropyltrimethoxysilane (GOPTS), immobi-
lise amino-modified oligonucleotide DNA. A 340 custom
oligo-array was built with DNA probe complementary to a
corresponding full length of 340 mature miRNAs and com-
prised positive and negative control probes. More informa-
tions about microarray protocols can be found at the Gene
Expression Omnibus (GEO) at the National Centre for Bio-
technology Information (NCBI). Total RNA was extracted
from blood/sera using TRIZOLTM reagent (Invitrogen) and
miRNA was isolated using a PureLink™ miRNA Isolation
Kit (Invitrogen). microRNAs were tagged and hybridized by
NCode™ miRNA Labeling System (Invitrogen), according
to manufacturer’s instructions, and then placed on the mi-
croarray slides; each miRNA sample was tagged with Alexa
Fluor® 5, while the universal reference RNA was labelled
using Alexa Fluor® 3. Each array was subsequently washed
and analyzed using an Affymetrix 428 array Scanner.
Statistics
The statistical analysis was performed using SPSS (ver-
sion 19; SPSS) and GraphPad Prism (version 5.0, GraphPad
Software). The 2-tailed Mann-Whitney U tests and Kruskal-
Wallis tests with Dunn’s multiple comparison were applied
for groupwise comparisons of clinical and biological data’s
distributions. Results were statistically significative for
P<0.05.
RESULTS
Patients
In this study, we analyzed 112 plasma samples derived
from 53 male and 59 female patients; the age was 18–75
years (mean 51 years). In all patients with glial tumour, the
histopathologic diagnosis was established by brain biopsy.
There were 6 patients with anaplastic astrocytoma (WHO
grade III), 8 patients with low-grade astrocytoma (World
Health Organization [WHO] grade II) and 16 patients with
glioblastoma (WHO grade IV). Primary treating physicians
by means of a questionnaire gave preliminary informations.
The median interval between cancer and serum sampling
was 1 month for both astrocytic and oligodendroglial can-
cers, but the wide range considers the presence of patients
with long follow-up times. In 4 patients in the astrocytic
group, blood samples were obtained more than one year after
surgery and in 5 patients with oligodendroglial cancers, more
than two years after tissue sampling. All serum samples were
achieved after surgery and prior to radiotherapy in 60% of
the patients. Eighteen of 30 serum samples derived from
patients affected by glioma were analyzed by microarray,
while all the samples were analyzed by qRT-PCR. Similarly,
18 of the 30 serum samples derived from patients affected by
various neurological disorders (control group) were studied
by microarray, while all the samples were analyzed by
means of qRT-PCR.
The microarray gene expression profile was performed
comparing the serum derived from 18 patients affected by
glioma against the serum of 18 patients with various neuro-
logical disorders in order to find differentially expressed
microRNA.
In order to validate the microarray expression profile data
we have studied the expression levels of the four differen-
tially expressed microRNAs in a larger cohort of patients
composed by 30 patients affected by glioma (18 of which
306 Current Genomics, 2015, Vol. 16, No. 5 D’Urso et al.
were already analyzed by microarray), 30 control patients
affected by vairous neurological disorders (18 of which were
already analyzed by microarray), 30 patients affected by
PCNSL and 16 patients affected by metastases.
Differential Expression of miRNAs in Glioma - Gene Ex-
pression Profiling
The expression profile of 340 mammalian microRNAs
was monitored by DNA microarrays using plasma samples
from 18 patients with glioma and plasma from 18 patients
suffering from various neurological disorders (“control”
group). To avoid low expression genes, only microRNAs
with a Signal value greater than 100 were selected and miR-
NAs with a signal to noise ratio greater than 2.5 were chosen
for further studies. Afterwards, microRNAs showing differ-
ent level of expression between glioma and “control” serum
were independently filtered by a parametric Student's t test,
assuming equal variances, p-value cut-off of 0.01 and multi-
ple testing corrections (Benjamini and Hochberg False Dis-
covery Rate). Using these restrictions, we selected four mi-
croRNAs which clearly present a differential expression be-
tween glioma and control group: miR-16, miR-15b miR-21
and miR-155. Using Smooth correlation coefficients, all
samples were analized by average linkage clustering, on the
basis of similarity of expression patterns over the detected
genes. This yielded two major clusters, one performing the
glioma group and the other the control group, as expected
(Fig. 1).
Diagnostic Analysis of miR-15b and miR-21 Levels in
Plasma by qRT-PCR
The four microarray-selected miRNAs were quantified
by TaqMan qRT-PCR in a set of serum samples derived
from 30 patients affected by glioma (18 of which are the
same serum samples used in for microarray gene expression
profile) and from 30 “control” patients affected by miscella-
neous neurologic disorders (18 of which are the same serum
samples used in for microarray gene expression profile).
As expected miR-15b and miR-21 were significantly
increased (early Ct values) in serum samples derived from
patients affected by glioma. Conversely, miR-16 showed
significantly decreased levels in patients with glioma; low
levels of miR-24 were measured in all samples (Table 1). As
other classes of small RNAs, such as the snoRNA RNU6B,
are not useful for the normalization as they are unstable in
serum, it’s important to find small housekeeping microR-
NAs. In this study, miR-24 was proposed for normalisation
and showed to be applicable to the analysis of these types of
tumors. MiRNA expression levels in individual plasma
specimens were therefore reported as RELs. A remarkably
increased mean REL miR-15b and a decreased expression of
miR-16 was demonstrated in plasma samples from patients
with glioma (Fig. 2).
By ROC curves of miR-15b, we observed evident separa-
tions between the glioma patients group and those without
tumour, with an area under the curve (AUC) of 1 (for a re-
view on ROC and AUC plots see Zweig et al. 1993) [27].
Corresponding to this analysis, a cut off plasma REL with
the highest accuracy for miR-15b was determined to be 4
with 100% sensitivity and specificity (Fig. 2). By combined
REL of miR-15b with REL of miR-21 and by a diagnostic
tree, we increased the specificity of discrimination of glioma
from other diseases (Fig. 3). For miR-21, a REL of 4 was
used to distinguish glioma from PCNSL and brain metasta-
ses while a REL of 1,74 was selected to distinguish glioma
from “control” samples.
Fig. (1). Cluster analysis. Tree generated by a cluster analysis performed on 36 blood samples. MiRNAs expression profile shows a clear
separation of 18 patients with glioma from 18 patients suffering various neurological disorders.
Identification of microRNAs in the Blood for the Diagnosis of Glioma Current Genomics, 2015, Vol. 16, No. 5 307
Table 1. miRNA expression in blood samples from patients with glioma, compared with control patients.
Patients with GliomaaControl Patientsb p valuee
CtcSDd Ctc SDd
miR-15b 31,79378 0,960109 34,7718 0,84934 <0,01
miR-16 28,58248 1,168615 27,55171 0,550783 0,02
miR-21 31,30626 0,989405 32,4941 0,550783 <0,01
miR-155 34,03455 0,5547 34,00748 0,554491 0,03
miR-24 29,46907 0,280595 29,49652 0,290466 0,01
a n=30
b Patients with miscellaneous neurological disorder
cData are means of CT values
dStandard deviation
eThe value is for comparison of miRNA expression among
patients with glioma and control patients and was calculated using
the Mann-Whitney test
Fig. (2). Relative expression levels of miR-15b, miR-16 and miR-21 in blood samples from patients with glioma, PCNSL and control patients.
Scatter plots of expression levels of miR-15b (2.a), miR-21 (2.b) and miR-16 (2.c) in blood samples from patients with glioma, miscellaneous
CNS disorders, PCNSL and brain or leptomeningeal metastases. Relative Expression Levels (REL) was normalized to expression levels of
biomarker miR24 (y-axis); median REL values were represent by black horizontal lines. (2.d) The area under the curve (AUC) of 1 were
yielded by blood relative expression of miR-15b as a single biomarker.
308 Current Genomics, 2015, Vol. 16, No. 5 D’Urso et al.
Fig. (3). miRNA diagnostic tree - REL values lower than 4 for
miR-21 selected a first subgroup made of 30 gliomas together with
30 control and 2 PCNSL patients. Internal to this group, using an-
other REL range for miR-21 (values between 1.74 and 4) a group
made of all gliomas together with 2 PCNSL patients is selected. A
further classification is shown using REL values for miR-15b
higher than 4, in order to finally select the 30 glioma only.
Between the three miRNAs iden tified miR-16 only was
able to discriminate between the different grades of gliomas,
as its expression in the plasma were decreased significantly
in glioblastoma (WHO IV) (Fig. 4). By ROC curves of miR-
16, an evident separation was observed between glioblas-
toma (WHO IV) group and those of other grades (WHO II
and III), with an AUC of 0.98. In this analysis, a cut off
plasma REL with highest accuracy for miR-16 was 0.33 with
0.98% sensitivity and 98% specificity (Fig. 4). The only
false-negative results were observed for two patients with
anaplastic astrocytoma diagnosis (WHO grade III).
DISCUSSION
In the present study, we demonstrated that in patients
affected by glioma an altered extracellular produc-
tion/excretion of miR-15b, miR-16, miR-21 and miR-155
can be detected in peripheral blood samples, providing evi-
dence that microRNAs circulating in plasma may be used as
biomarkers for the detection and grading of gliomas. These 4
deregulated miRNAs were quantified by qRT-PCR. In
plasma samples collected from subjects with glioma, miR-
15b levels were significantly increased compared with pa-
tients affected by miscellaneous neurologic disorders,
PCNSL or brain metastases and AUC had value 1 in ROC
analyses; these results are in agreement with those reported
by several other authors, who reported high miR-15b expres-
sion levels in the cerebrospinal fluid (CSF) derived from
patients with glioma and in glioma tissues [25, 28, 29]. MiR-
15b, involved in tumour carcinogenesis by regulating cell
cycle progression, has a significant diagnostic value for
glioma. Interestingly the biomarker miR-15b, inducing cell
cycle arrest in G1 phase by targeting Cyclin E1 (CCNE1)
and regulating the cell cycle by G1 to S phase transition, may
function as a tumor suppressor, as suggested by Xia et al.
[28]. By microRNA microarray, miRNA expression levels
compared between normal and glioma tissues in Chinese
patients were significantly deregulated in glioma samples, as
observed for miR-15b, -34a, -146b and -200a; miR-15b was
down-regulated also in chronic lymphocytic leukemia and in
gastric tumour, modulating multidrug resistance by targeting
BCL2 [29, 30].
Fig. (4). Relative expression levels of miR-16 in blood samples
from patients with glioma WHO II, glioma WHO III, glioma WHO
IV, control patients, patients with PCNSL and patients with metas-
tases. Scatter plots of expression levels of miR16 in blood samples
collected from patients with various grade glioma, miscellaneous
CNS disorders, PCNSL and brain or leptomeningeal metastases.
Relative Expression Levels (REL) was normalized to the expres-
sion levels of biomarker miR24 (y-axis); median REL values were
represent by black horizontal lines.
To increase the discriminatory diagnostic value, we also
combined miR-15b and miR-21 expression analyses. Thus,
combined analysis of these biomarkers demonstrated that
miRNA blood levels accurately distinguished patients with
glioma, PCNSL and brain metastases or leptomeningeal car-
cinoma. For miR-15b, a cut off plasma REL with the highest
accuracy was 4, instead for miR-21 a REL of 4 was used to
distinguish glioma from PCNSL and brain metastases while
a REL of 1.74 was selected to distinguish glioma from “con-
trol” samples. More precisely, the REL of these two miR-
NAs have proved to be of great importance since they have
allowed to discriminate between patients with glioma and all
the other (specifically, REL values lower than 4 for miR-21
selected all 30 gliomas together with 30 control and 2
PCNSL). Internal to this group, has been possible to use an-
other REL values for miR-21 (values between 1.74 and 4) to
select again a group made of all gliomas together with 2
PCNSL patients. An additional classification has been done
using REL values for miR-15b higher than 4, to finally select
the 30 glioma only (Fig. 3). MiR-15b, the most abundant
microRNA in blood samples, showed an 8-fold higher ex-
pression levels in patients with glioma. MiR-21, which was
also overexpressed in the cerebrospinal fluid samples from
patients with glioma, is one of the most consistently ex-
pressed microRNA in cancer originating from other tissues.
It functions as an oncogene in glioma, preventing apoptosis.
Identification of microRNAs in the Blood for the Diagnosis of Glioma Current Genomics, 2015, Vol. 16, No. 5 309
Several pathways are predicted targets for miR-21, such as
the tumor suppressor gene p53 pathway, the transforming
growth factor and the mitochondrial apoptosis pathways.
Furthermore, studies have shown that tropomyosin 1 could
be down-regulated by miR-21. Other predicted targets in-
clude programmed cell death gene 4 (PDCD4), the phospha-
tase and tensin homolog tumor suppressor and reversion-
inducing cysteine-rich precursor with Kazal motifs [31, 34].
Noteworthy, glioblastomas expressed significantly higher
levels of miR-15b and miR-21 than anaplastic astrocytomas,
while there was no significant association between expres-
sion levels of these markers and survival among patients with
glioma [29]. Consistently with Baraniskin [25], we observed
no association between miR-15b and miR-21 expression
levels and the survival among patients with tumour or the
glioma grading. On the other hand, a correlation was found
between glioma grading and the expression levels of miR-
16. A decreased expression levels of biomarker miR-16
characterize the glioblastoma (WHO IV) in respect to lo w
grade and anaplastic glioma. These data are in accordance
with that of Baraniskin et al., who demonstrated that mi-
croRNAs circulating in the cerebrospinal fluid (CSF) can be
used as biomarkers for glioma detection [26]. MiR-16, that
forms a cluster with miR-15a at chromosome position
13q14, functions by targeting many oncogenes, as BCL2,
MCL1, CCND1, WNT3A and these miRNAs are down-
regulated in chronic lymphocytic lymphoma (CLL), prostate
carcinoma and pituitary adenomas [32, 33].
Can cer-secreted microRNAs are important intermediaries
in cancer-host crosstalk and they are investigated for their
potential use as prognostic and predictive biomarkers. miR-
21 and miR15b may represent an therapeutic target to con-
trol multiple steps of pathogenesis; for example, the inhibi-
tion of miR-21 in glioblastoma cells increased apoptosis,
while in cultured hepatocellular carcinoma cells significantly
led to decrease of tumor cell proliferation, migration and
invasion [31]. After transfection with anti-miR-21, reduced
cellular invasion were observed in a colorectal, breast and
prostate cancers cells; moreover, when anti-miR-21 was
transfected in metastatic breast cancer cells, the number of
lung metastases was significantly decreased [31]. The de-
crease of the expression levels of miR-15b and miR-200b
underlines the mechanisms of epithelial-mesenchymal transi-
tion induced by chemotherapy and it might serve as thera-
peutic targets to reverse chemotherapy resistance in tongue
tumours. Low levels of miR-200b and miR-15b were ex-
pressed in patients with lymph node metastasis or che-
motherapeutic resistance, indicating that tumor progression
was associated with miR-200b and miR-15b downregulated
levels [35]. Also other microRNAs are investigated for their
potential prognostic use. In the breast tumour, miR-105
characteristically was expressed and secreted by metastatic
breast cancer cells, as it was a potent regulator of migration
targeting the tight junction protein ZO-1. The overexpression
of miR-105 in non-metastatic cancer cells induced metastasis
and vascular permeability in distant organs, whereas these
effects were alleviated in highly metastatic tumors when
miR-105 was inhibited [36]. miR-139-5p is identified as a
prognostic marker for the aggressive forms of breast tumour;
bioinformatic analysis reveales a predicted disruption to the
TGF, Wnt, Rho and MAPK/PI3K signaling cascades, im-
plying a potential regulated role in the cellular invasion and
migration [37]. Metastatic endothelial recruitment, angio-
genesis and colonization were suppressed by miR-126,
through coordinate targeting of pro-angiogenic genes. Ex-
tracellular (exosome-like) vesicles are involved in cell-to-
cell communication; breast cancer cells released membrane
vesicles into extracellular medium containing potential on-
cogenic molecules, such as proteins and miRNAs, that could
transmit signals to non-malignant cells and implicate tumor
progression and metastasis [38].
MiRNA take part in a wide range of biological processes,
as immune response, cellular proliferation and apoptosis.
Several works evaluate host-pathogen interaction, focused
on viral and bacterial infections. Virus express many mi-
croRNAs in infected cells to modulate the levels of both vi-
ral and cellular mRNAs, thereby influencing viral replication
and pathogenesis; less is known about the bacterial infec-
tions and the effect of bacterial pathogens on host miRNA
expression. In the plant infection, for example, up-regulation
of miR-393a induced by Pseudomonas syringae in Arabi-
dopsis thaliana contributes to the resistance of the plant
against the bacterial pathogen; as bacterial defense mecha-
nism, conversely, P. syringae secretes in to the host cell ef-
fector proteins that suppress transcription or activity of host
microRNAs [39].
In the mammalian infection, the analysis of circulating
miRNAs in the serum of individuals infected with Mycobac-
terium tuberculosis identified 59 up-regulated miRNAs and
33 down-regulated. It has been shown that T-cells can trans-
fer miRNAs to antigen-presenting cells via exosomes, sug-
gesting that intercellular miRNA transfer may contribu te to
coordinate and fine-tune gene expression during the immune
response [39]. Human monocytes stimulated with bacterial
wall component lipopolysaccharide (LPS), furthermore, up-
regulated miR-132, miR-146a/b and miR-155 targeting
mRNAs of genes downstream of Toll-like receptor 4
(TLR4), to protect host cells from an excessive TLR4 re-
sponse [40, 41]. In the gut mucosa homeostasis, comparative
analysis of miRNA expression of germ-free mice and mice
colonized with the microbiota from pathogen-free mice iden-
tified 9 miRNAs differentially expressed: miR-298 (ileum)
and miR-128, miR-200c, miR-665, microR-465c-5p, miR-
342-5p, miR-466d-3p, miR-466d- 5p and miR-68 (colon).
Dulmasso et al. concluded that host microRNA expression is
modulated by microbiota and it in turn regulates host gene
expression [42].
This study is based on a limited number of miRNAs,
considering that the total number of known microRNAs has
triplicated in recent years; thus, further studies are required
to better understand which are the target of these miRNAs
and in which molecular pathways are involved.
CONCLUSION
In this work, considering the high diagnostic value of
combined miR-15b, miR-21 and miR-16 analyses, we pre-
sent a set of circulating miRNA that characterize glioma. In
accordance with Baraniskin study in CSF samples, the avail-
ability of these miRNA may facilitate the diagnosis and
clinical management of this tumour type. As cancer-secreted
microRNAs are emerging mediators of cancer-host crosstalk,
310 Current Genomics, 2015, Vol. 16, No. 5 D’Urso et al.
they may be used as indicators of early disease detection and
recurrence prediction after surgery. These results provide an
evident rationale for quantification in prospective trials of
microRNAs in plasma for diagnostic and prognostic pur-
poses in brain tumors.
CONFLICT OF INTEREST
The author(s) confirm that this article content has no con-
flict of interest.
ACKNOWLEDGEMENTS
Declared none.
REFERENCES
[1] Turner, J.D.; Williamson, R.; Almefty, K.K.; Nakaji, P.; Porter, R.;
Tse, V.; Kalani, M.Y. The many roles of microRNAs in brain tu-
mor biology. Neurosurg. Focus,2010,28(1), E3.
[2] Ventura, A.; Jacks, T. MicroRNAs and cancer: short RNAs go a
long way. Cell,2011,136(4), 586-591.
[3] Poltronieri, P.; D’Urso, P.I.; Mezzolla, V.; D’Urso, O.F. Potential of
anti-cancer therapy based on anti-mir-155 o ligonucleotides in glioma
and brain tumours. Chem. Biol. Drug Des., 2013,81(1), 79-84.
[4] Volinia, S.; Calin, G.A.; Liu, C.G.; Ambs, S.; Cimmino, A.;
Petrocca, F.; Visone, R.; Iorio, M.; Roldo, C.; Ferracin, M.; Prueitt,
R.L.; Yanaihara, N.; Lanza, G.; Scarpa, A.; Vecchione, A.; Negrini,
M.; Harris, C.C.; Croce, C.M. A microRNA expression signature of
human solid tumors defines cancer gene targets. PNAS,2006,
103(7), 2257-2261.
[5] Yu, D.C.; Li, Q.G.; Ding, X.W.; Ding, Y.T. Circulating MicroR-
NAs: Potential Biomarkers for Cancer. Int. J. Mol. Sci.,2011,
12(3), 2055-2063.
[6] Wang, W.T.; Chen, Y.Q. Circulating miRNAs in cancer: from
detection to therapy. J. Hematol. Oncol.,2014,7(1), 86.
[7] Brase, J.C.; Wuttig, D.; Kuner, R .; Sültmann, H. Serum microR-
NAs as non-invasive biomarkers for cancer. Mol. Cancer,2010,9,
306.
[8] Valadi, H.; Ekstrom, K.; Bossios, A .; Sjostrand, M.; Lee, J.J.; Lot-
vall, J.O. Exosome-mediated transfer of mRNAs and microRNAs
is a novel mechanism of genetic exchange between cells. Nat. Cell
Biol., 2007,9(6), 654-659.
[9] Skog, J.; Wurdinger, T.; van Rijn, S.; Meijer, D.H.; Gainche, L.;
Sena-Esteves, M.; Curry, W.T. Jr; Carter, B.S.; Krichevsky, A.M.;
Breakefield, X.O. Glioblastoma microvesicles transport RNA and
proteins that promote tumour growth and provide diagnostic bio-
markers. Nat. Cell Biol., 2008,10(12), 1470-1476.
[10] Hunter, M.P.; Ismail, N.; Zhang, X.; Aguda, B.D.; Lee, E.J.; Yu,
L.; Xiao, T.; Schafer, J.; Lee, M.L.; Schmittgen, T.D.; Nana-
Sinkam, S.P.; Jarjoura, D.; Marsh, C.B. Detection of microRNA
expression in human peripheral blood microvesicles. PLoS ONE,
2008,3(11), e3694.
[11] Michael, A.; Bajracharya, S.D.; Yuen, P.S.; Zhou, H.; Star, R.A.;
Illei, G.G.; Alevizos, I. Exosomes from human saliva as a source of
microRNA biomarkers. Oral Dis., 2010,16(1), 34-38.
[12] Dimov, I.; Jankovic Velickovic, L.; Stefanovic, V. Urinary
exosomes. Sci. World J.,2009,9, 1107-1118.
[13] Zhang, Y.; Liu, D.; Chen, X.; Li, J.; Li, L.; Bian, Z.; Sun, F.; Lu, J.;
Yin, Y.; Cai, X. Secreted Monocytic miR-150 Enhances Targeted
Endothelial Cell Migration. Mol. Cell,2010,39(1), 133-144.
[14] Mitchell, P.S.; Parkin, R.K.; Kroh, E.M.; Fritz, B.R.; Wyman, S.K.;
Pogosova-Agadjanyan, E.L.; Peterson, A.; Noteboom, J.; O'Briant,
K.C.; Allen, A.; Lin, D.W.; Urban, N.; Drescher, C.W.; Knudsen,
B.S.; Stirewalt, D.L.; Gentleman, R.; Vessella, R.L.; Nelson, P.S.;
Martin, D.B.; Tewari, M. Circulating microRNAs as stable blood-
based markers for cancer detection. Proc. Natl. Acad. Sci. U.S.A.,
2008,105(30), 10513-10518.
[15] Schetter, A.J.; Harris, C.C. Plasma microRNAs: a potential bio-
marker for colorectal cancer. Gut,2009,58(10), 1318-1319.
[16] Li, A.; Omura, N.; Hong, S.M.; Vincent, A.; Walter, K.; Griffith,
M.; Borges, M.; Goggins, M. Pancreatic cancers epigenetically si-
lence SIP1 and hypomethylate and overexpress miR-200a/200b in
association with elevated circulating miR-200a and miR-200b lev-
els. Cancer Res.,2010,70(13), 5226-5237.
[17] Tsujiura, M.; Ichikawa, D.; Komatsu, S.; Shiozaki, A.; Takeshita,
H.; Kosuga, T.; Konishi, H.; Morimura, R.; Deguchi, K.; Fujiwara,
H.; Okamoto, K.; Otsuji, E. Circulating microRNAs in plasma of
patients with gastric cancers. Br. J. Cancer,2010,102(7), 1174-
1179.
[18] Heneghan, H.M.; Miller, N. ; Lowery, A.J.; Sweeney, K.J.; Newell,
J.; Kerin, M.J. Circulating microRNAs as novel minimally invasive
biomarkers for breast cancer. Ann. Surg., 2010,251(3), 499-505.
[19] D'Urso, P.I.; D'Urso, O.F.; Storelli, C.; Mallardo, M.; Gianfreda,
C.D.; Montinaro, A.; Cimmino, A.; Caliandro, P.; Marsigliante, S.
miR-155 is up-regulated in primary and secondary glioblastoma
and promotes tumour growth by inhibiting GABA receptors. Int. J.
Oncol., 2012,41, 228-234.
[20] Sun, J.; Liao, K.; Wu, X.; Huang, J.; Zhang, S.; Lu, X. Serum mi-
croRNA-128 as a biomarker for diagnosis of glioma. Int. J. Clin.
Exp. Med.,2015,8(1), 456-463.
[21] Tsang, J.C.; Lo, Y.M. Circulating nucleic acids in plasma/serum.
Pathology., 2007,39(2), 197-207.
[22] Skvortsova, T.E.; Rykova, E.Y.; Tamkovich, S.N.; Bryzgunova,
O.E.; Starikov, A.V.; Kuznetsova, N.P.; Vlassov, V.V.; Laktionov,
P.P. Cell-free and cellbound circulating DNA in breast tumours:
DNA quantification and analysis of tumour-related gene methyla-
tion. Br. J. Cancer,2006,94(10), 1492-1495.
[23] Umetani, N.; Giuliano, A.E.; Hiramatsu, S.H.; Amersi, F .; Naka-
gawa, T.; Martino, S.; Hoon, D.S. Prediction of breast tumor pro-
gression by integrity of free circulating DNA in serum. J. Clin. On-
col.,2006,24(26), 4270-4276.
[24] Lavon, I.; Refael, M.; Zelikovitch, B.; Shalom, E.; Sieghal, T.
Serum DNA can define tumor-specific genetic and epigenetic
markers in gliomas of various grades. Neuro Oncol., 2010,12(2),
173-180.
[25] Baraniskin, A.; Kuhnhenn, J.; Schlegel, U.; Maghnouj, A.; Zollner,
H.; Schmiegel, W.; Hahn, S.; Schroers, R. Identification of mi-
croRNAs in the cerebrospinal fluid as biomarker for the diagnosis
of glioma. Neuro Oncol., 2012,14(1), 29-33.
[26] Baraniskin, A.; Kuhnhenn, J.; Schlegel, U.; Chan, A.; Deckert, M.;
Gold, R.; Maghnouj, A.; Zöllner, H.; Reinacher-Schick, A.;
Schmiegel, W.; Hahn, S.A.; Schroers, R. Identification of microR-
NAs in the cerebrospinal fluid as marker for primary diffuse large
B-cell lymphoma of the central nervous system. Blood,2011,
117(11), 3140-3146.
[27] Zweig, M.H.; Campbell, G. Receiver-operating characteristic
(ROC) plots: a fundamental evaluation tool in clinical medicine.
Clin. Chem., 1993,39, 561-577.
[28] Guan, Y.; Mizoguchi, M.; Yoshimoto, K.; Hata, N.; Shono, T.;
Suzuki, S.O.; Araki, Y.; Kuga, D.; Nakamizo, A.; Amano, T.; Ma,
X.; Hayashi, K.; Sasaki, T. MiRNA-196 is upregulated in glioblas-
toma but not in anaplastic astrocytoma and has prognostic signifi-
cance. Clin. Cancer Res., 2010,16(16), 4289-4297.
[29] Xia, H.; Qi, Y.; Ng, S.S.; Chen, X.; Chen, S.; Fang, M.; Li, D.;
Zhao, Y.; Ge, R.; Li, G.; Chen, Y.; He, M.L.; Kung, H.F.; Lai, L.;
Lin, M.C. MicroRNA-15b regulates cell cycle progression by tar-
geting cyclins in glioma cells. Biochem. Biophys. Res. Commun.,
2009,380(2), 205-210.
[30] Xia, L.; Zhang, D.; Du, R.; Pan, Y.; Zhao, L.; Sun, S.; Hong, L.;
Liu, J.; Fan, D. miR-15b and miR-16 modulate multidrug resis-
tance by targeting BCL2 in human gastric cancer cells. Int. J. Can-
cer,2008,123(2), 372-9.
[31] Faragalla, H.; Youssef, Y.M.; Scorilas, A.; Khalil, B.; White,
N.M.A.; Mejia-Guerrero, S.; Khella, H.; Jewett, M.A.S.; Evans, A.;
Lichner, Z.; Bjarnason, G.; Sugar, L.; Attalah, M.I.; Yousef, G.M.
The clinical utility of mir-21 as a diagnostic and prognostic marker
for renal cell carcinoma. J. Mol. Diagn., 2012,14(4), 385-392.
[32] Calin, G.A.; Dumitru, C.D.; Shimizu, M.; Bichi, R.; Zupo, S.;
Noch, E.; Aldler, H.; Rattan, S.; Keating, M.; Rai, K.; Rassenti, L.;
Kipps, T.; Negrini, M.; Bullrich, F.; Croce, C.M. Frequent dele-
tions and downregulation of micro-RNA genes miR15 and miR16
at 13q14 in chronic lymphocytic leukemia. Proc. Natl. Acad. Sci.
U.S.A., 2002,99(24), 15524-15529.
[33] Aqeilan, R.I.; Calin, G.A.; Croce, C.M. miR-15a and miR-16-1 in
cancer: discovery, function and future perspectives. Cell Death Dif-
fer., 2010,17(2), 215-20.
[34] Papagiannakopoulos, T.; Shapiro, A.; Kosik, K.S. MicroRNA-21
targets a network of key tumor-suppressive pathways in glioblas-
toma cells. Cancer Res., 2008,68(19), 8164-8172.
Identification of microRNAs in the Blood for the Diagnosis of Glioma Current Genomics, 2015, Vol. 16, No. 5 311
[35] Sun, L.; Yao, Y.; Liu, B.; Lin, Z.; Lin, L.; Yang, M.; Zhang, W.;
Chen, W.; Pan, C.; Liu, Q.; Song, E.; Li, J. MiR-200b and miR-15b
regulate chemotherapy-induced epithelial-mesenchymal transition
in human tongue cancer cells by targeting BMI1. Oncogene,2012,
31, 432-445.
[36] Zhou, W.; Fong, M.Y.; Min, Y.; Somlo, G.; Liu, L.; Palomares,
M.R.; Yu, Y.; Chow, A.; O'Connor, S.T.; Chin, A.R.; Yen, Y.;
Wang, Y.; Marcusson, E.G.; Chu, P.; Wu, J.; Wu, X.; Li, A.X.; Li,
Z.; Gao, H.; Ren, X.; Boldin, M.P.; Lin, P.C.; Wang, S.E. Cancer-
secreted mir-105 destroys vascular endothelial barriers to promote
metastasis. Cancer Cell., 2014,25(4), 501-15.
[37] Krishnan, K.; Steptoe, A.L.; Martin, H.C.; Pattabiraman, D.R.;
Nones, K.; Waddell, N.; Mariasegaram, M.; Simpson, P.T.;
Lakhani, S.R.; Vlassov, A.; Grimmond, S.M.; Cloonan, N. miR-
139-5p is a regulator of metastatic pathways in breast cancer. RNA,
2013,19(12), 1767-80.
[38] Kruger, S.; Abd Elmageed, Z.Y.; Hawke, D.H.; Wörner, P.M.;
Jansen, D.A.; Abdel-Mageed, A.B.; Alt, E.U.; Izadpanah, R. Mo-
lecular characterization of exosome-like vesicles from breast can-
cer cells. BMC Cancer,2014,14, 44.
[39] Maudet, C.; Mano, M.; Eulalio, A. MicroRNAs in the interaction
between host and bacterial pathogens. FEBS Lett., 2014,588(22),
4140-4147.
[40] Taganov, K.D.; Boldin, M.P.; Chang, K.J.; Baltimore, D. NF-kB-
dependent induction of microRNA-146A, an inhibitor targeted to
signaling proteins of innate immune responses. Proc. Natl. Acad.
Sci. U.S.A.,2006,103, 12481-12486.
[41] O’Neill, L.A.; Sheedy, F.J.; McCoy, C.E. MicroRNAs: the fine-
tuners of Toll-like receptor signalling. Nat. Rev. Immunol., 2011,
11(3),163-75.
[42] Dalmasso, G.; Nguyen, H.T.T.; Yan, Y.; Laroui, H.; Charania,
M.A.; Ayyadurai, S.; Sitaraman, S.V.; Merlin, D. Microbiota
modulate host gene expression via microRNAs. PLoS ONE,2011,
6(4), e19293.
Received on: March 20, 2015 Revised on: April 16, 2015 Accepted on: April 20, 2015
... Examples of several clinical and preclinical studies investigating miRNAs in GBM are shown in Tables 4 and 5 and highlighted in the literature [76,148,170], respectively. Besides distinguishing GBM patients from healthy individuals (Table 4), these studies also revealed that changes in the expression of specific miRNAs (upregulation: miR-210, miR-454-3p, miR-182, miR-20a-5p, miR-106a-5p, miR-181b-5p; downregulation: miR-128, miR-342-3p, miR-16, miR-497, miR-125b, miR-205) could effectively differentiate between patients with GBM and those with lower-grade gliomas or other brain pathologies [171][172][173][174][175][176][177][178][179][180], with reported sensitivities and specificities ranging from 58% to 99% and from 67% to 100%, respectively [171][172][173][174][175][176][177][178][179]181,182]. High miR-10 levels associated with much shorter patient survival compared with the low miR-10 expressors. ...
... Examples of several clinical and preclinical studies investigating miRNAs in GBM are shown in Tables 4 and 5 and highlighted in the literature [76,148,170], respectively. Besides distinguishing GBM patients from healthy individuals (Table 4), these studies also revealed that changes in the expression of specific miRNAs (upregulation: miR-210, miR-454-3p, miR-182, miR-20a-5p, miR-106a-5p, miR-181b-5p; downregulation: miR-128, miR-342-3p, miR-16, miR-497, miR-125b, miR-205) could effectively differentiate between patients with GBM and those with lower-grade gliomas or other brain pathologies [171][172][173][174][175][176][177][178][179][180], with reported sensitivities and specificities ranging from 58% to 99% and from 67% to 100%, respectively [171][172][173][174][175][176][177][178][179]181,182]. High miR-10 levels associated with much shorter patient survival compared with the low miR-10 expressors. ...
Article
Full-text available
Gliomas, particularly glioblastoma (GBM), represent the most prevalent and aggressive tumors of the central nervous system (CNS). Despite recent treatment advancements, patient survival rates remain low. The diagnosis of GBM traditionally relies on neuroimaging methods such as MRI and postoperative confirmation via histopathological and molecular analysis. Imaging techniques struggle to differentiate between tumor progression and treatment-related changes, leading to potential misinterpretation and treatment delays. Similarly, tissue biopsies, while informative, are invasive and not suitable for monitoring ongoing treatments. These challenges have led to the emergence of liquid biopsy, particularly through blood samples, as a promising alternative for GBM diagnosis and monitoring. Presently, blood and cerebrospinal fluid (CSF) sampling offers a minimally invasive means of obtaining tumor-related information to guide therapy. The idea that blood or any biofluid tests can be used to screen many cancer types has huge potential. Tumors release various components into the bloodstream, including circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), cell-free nucleic acids such as microRNAs (miRNAs), proteins, extracellular vesicles (EVs) or exosomes, metabolites, and other factors. These factors have been shown to cross the blood–brain barrier (BBB), presenting an opportunity for the minimally invasive monitoring of GBM as well as for the real-time assessment of distinct genetic, epigenetic, transcriptomic, proteomic, and metabolomic changes associated with brain tumors. Despite their potential, the clinical utility of liquid biopsy-based circulating biomarkers is somewhat constrained by limitations such as the absence of standardized methodologies for blood or CSF collection, analyte extraction, analysis methods, and small cohort sizes. Additionally, tissue biopsies offer more precise insights into tumor morphology and the microenvironment. Therefore, the objective of a liquid biopsy should be to complement and enhance the diagnostic accuracy and monitoring of GBM patients by providing additional information alongside traditional tissue biopsies. Moreover, utilizing a combination of diverse biomarker types may enhance clinical effectiveness compared to solely relying on one biomarker category, potentially improving diagnostic sensitivity and specificity and addressing some of the existing limitations associated with liquid biomarkers for GBM. This review presents an overview of the latest research on circulating biomarkers found in GBM blood or CSF samples, discusses their potential as diagnostic, predictive, and prognostic indicators, and discusses associated challenges and future perspectives.
... In another study, D'Urso et al. incorporated 112 plasma samples from 53 male and 59 female patients. miR-15b and miR-21 were found to be increased in glioma patients, while miR-16 differentiated glioblastoma from other grades of glioma (17). Alternatively, miR-24 levels were low in both healthy and glioma patients, and miR-16 levels were decreased in patients with glioma (17). ...
... miR-15b and miR-21 were found to be increased in glioma patients, while miR-16 differentiated glioblastoma from other grades of glioma (17). Alternatively, miR-24 levels were low in both healthy and glioma patients, and miR-16 levels were decreased in patients with glioma (17). ...
... 38 Moreover, these DEmiRNAs have been widely associated with proliferation, suppression of apoptosis, cell cycle progression, migration, invasion, and survival/ resistance to chemotherapy, moreover being potential diagnostic and prognostic biomarkers for GBM. [39][40][41][42][43][44][45][46] In our study, we found a significant difference in the expression of miRNAs in samples from glioma and glioblastoma patients with different IDH statuses, where patients with IDH WT have higher expression of several miRNAs when compared to IDH mut . The presence of the isocitrate dehydrogenase (IDH) mutation in one or two copies is currently used as a strong diagnostic and prognostic biomarker, GBM wt being then indicative of a worse prognosis. ...
Article
Full-text available
We explored key microRNAs (miRNAs) related to tumorigenesis and immune modulation in glioblastoma (GBM), employing in silico, in vitro, and ex vivo analysis along with an assessment of the cellular impacts resulting from miRNA inhibition. GBM and T cells miRNA expression profiles from public datasets were used to evaluate differentially expressed miRNAs (DEmiRNAs). Some DEmiRNAs were chosen for validation in GBM cell lines, primary cell cultures, and brain tumor patient samples, using RT‐qPCR. Target genes and pathways were identified with bioinformatic analyses. In silico functional enrichment analysis revealed that miR‐27a‐3p and miR‐155‐5p modulate immune, metabolic, and GBM‐related pathways. A172 cells were transfected with miRNA inhibitors and the effects on cellular processes and immunomodulation were analyzed by co‐culture assays and flow cytometry. Upon validation, miR‐27a‐3p and miR‐155‐5p miRNAs expressions were consistently increased. Inhibiting these two miRNAs reduced cell viability, but only the inhibition of miR‐27a‐3p led to apoptosis. Co‐culture assays showed an increase in Th1 cells along with elevated Th1/Treg and Th17/Treg ratios, and an increase in Th17 cells exclusively with miR‐155‐5p inhibition. Immune cells' gene expression modulation induced an antitumor profile, concomitant with an increase in the expression of apoptotic genes in cancer cells after co‐culture. This study unveils potential targets for immune and tumor regulation, highlighting overexpressed miRNAs modulation as a novel therapeutic approach for GBM.
... Increases resistance by activating anti-apoptotic signaling pathways and reduces sensitivity to chemotherapy [99,100] miR-10b Facilitates tumor cell invasion and promotes stem cell-like properties Induces therapeutic resistance through upregulation of prosurvival pathways and inhibition of apoptosis [101] lncRNA HOTAIR Enhances GB cell migration, invasion, and epithelial-tomesenchymal transition (EMT) Contributes to radioresistance by promoting DNA damage repair and enhancing stemness properties [102][103][104] lncRNA MALAT1 ...
... Mir-21 is described as an important miRNA investigated in cancer that has been found to be upregulated in both plasma and tissue of GBM patients, correlating with lower overall survival and tumor grading [39][40][41]. However, it was not detected in our cohort. ...
Article
Full-text available
Simple Summary This research investigates the identification of tumor-specific serological biomarkers for the early diagnosis of glioblastoma multiforme (GBM) recurrence using peripheral whole blood samples in a minimally invasive approach known as “liquid biopsy”. Our results indicate that gene expression analysis can detect changes in transcriptional (mRNAs) and post-transcriptional (small RNAs) levels after surgery and upon tumor recurrence. This prospective study aims to develop a diagnostic tool complementary to MRI modalities in the clinical follow-up, helping to track tumor progression/recurrence and to make clinical decisions. Abstract GBM WHO CNS Grade 4 represents a major challenge for oncology due to its aggressive behavior. Conventional imaging has restrictions in detecting tumor recurrence. This prospective study aims to identify gene-based biomarkers in whole blood instead of isolating exosomes for the early detection of tumor recurrence. Blood samples (n = 33) were collected from seven GBM patients at time points before and after surgery as well as upon tumor recurrence. Four tumor tissue samples were assessed in parallel. Next-generation sequencing (NGS), including mRNA-seq and small RNA-seq, was used to analyze gene expression profiles in blood samples and tumor tissues. A novel filtering pipeline was invented to narrow down potential candidate genes. In total, between 6–93 mRNA and 1–19 small RNA candidates could be identified among the seven patients. The overlap of genes between the patients was minimal, indicating significant inter-individual variance among GBM patients. In summary, this prospective study supports the applicability of gene expression measurements in whole blood for the detection of tumor recurrence. It might provide an alternative to the challenging workflow of liquid biopsy after laborious exosome isolation from whole blood.
Article
Full-text available
This review explores the topic of microRNAs (miRNAs) for improved early detection of imperceptible cancers, with potential to advance precision medicine and improve patient outcomes. Historical research exploring miRNA’s role in cancer detection collectively revealed initial hurdles in identifying specific miRNA signatures for early-stage and difficult-to-detect cancers. Early studies faced challenges in establishing robust biomarker panels and overcoming the heterogeneity of cancer types. Despite this, recent developments have supported the potential of miRNAs as sensitive and specific biomarkers for early cancer detection as well as having demonstrated remarkable potential as diagnostic tools for imperceptible cancers, such as those with elusive symptoms or challenging diagnostic criteria. This review discusses the advent of high-throughput technologies that have enabled comprehensive detection and profiling of unique miRNA signatures associated with early-stage cancers. Furthermore, advancements in bioinformatics and machine-learning techniques are considered, exploring the integration of multi-omics data which have potential to enhance both the accuracy and reliability of miRNA-based cancer detection assays. Finally, perspectives on the continuing development on technologies as well as discussion around challenges that remain, such as the need for standardised protocols and addressing the complex interplay of miRNAs in cancer biology are conferred.
Article
Glioblastoma (GBM) is the most common type of malignant brain tumor. The discovery of microRNAs and their unique properties have made them suitable tools as biomarkers for cancer diagnosis, prognosis, and evaluation of therapeutic response using different types of nanomaterials as sensitive and specific biosensors. In this review, we discuss microRNA-based electrochemical biosensing systems and the use of nanoparticles in the evolving development of microRNA-based biosensors in glioblastoma.
Article
MiR-16 and other several known oncogenes co-exist in various solid tumors and play carcinogenic roles in many tumors. This study explores whether miR-16 regulates autophagy expression and analyzes the role of targeted nanoparticle intervention in glioma. miR-16 and LC3 expressions were examined by reverse transcription-polymerase chain reaction (RT-PCR). They were assessed in normal lymphocytes, low-metastatic glioma, and high-metastatic glioma cell lines as well. The glioma cell line U251 was used to detect and compare the expression of LC3. Flow cytometry detected cell proliferation and the number of cell invasion and metastasis was detected by Transwell. LC3 mRNA in glioma tissues was evidently increased. The later the Tumor Node Metastasis (TNM) stage, the lower expression of miR-16 and the higher expression of LC3, which is related to TNM stage. LC3 mRNA in glioma cells was obviously higher than normal cells while miR-16 was lower than the latter. The expression of LC3 in glioma cell line U251 was higher, while miR-16 was lower. Transfection of siRNA-LC3 and targeted nanoparticles could effectively down-regulate the level of LC3 in the glioma cell line U251. In conclusion, miR-16 is related to the increased expression of LC3 and the enhanced ability of glioma cells to invade and metastasize.
Article
Full-text available
Exosomes are vesicles of endocytic origin released by many cells. These vesicles can mediate communication between cells, facilitating processes such as antigen presentation. Here, we show that exosomes from a mouse and a human mast cell line (MC/9 and HMC-1, respectively), as well as primary bone marrow-derived mouse mast cells, contain RNA. Microarray assessments revealed the presence of mRNA from approximately 1300 genes, many of which are not present in the cytoplasm of the donor cell. In vitro translation proved that the exosome mRNAs were functional. Quality control RNA analysis of total RNA derived from exosomes also revealed presence of small RNAs, including microRNAs. The RNA from mast cell exosomes is transferable to other mouse and human mast cells. After transfer of mouse exosomal RNA to human mast cells, new mouse proteins were found in the recipient cells, indicating that transferred exosomal mRNA can be translated after entering another cell. In summary, we show that exosomes contain both mRNA and microRNA, which can be delivered to another cell, and can be functional in this new location. We propose that this RNA is called " exosomal shuttle RNA " (esRNA). Exosomes are small (50–90 nm) membrane vesicles of endocytic origin that are released into the extracellular environment on fusion of multivesicular bodies (MVB) with the plasma membrane 1. Many cells have the capacity to release exosomes, including reticulo-cytes 2 , dendritic cells 3 , B cells 4 , T cells 5 , mast cells 6 , epithelial cells 7 and tumour cells 8. The functions of exosomes are not completely understood, although it has been shown that exosomes can participate in the signalling events contributing to antigen presentation to T cells 4 and the development of tolerance 9. Several mechanisms have been hypothesized describing the interactions of exosomes and recipient cells. Exosomes can bind to cells through recep-tor–ligand interactions, similar to cell–cell communication mediating , for example, antigen presentation 4. Alternatively, exosomes could putatively attach or fuse with the target-cell membrane, delivering exosomal surface proteins and perhaps cytoplasm to the recipient cell 10,11. Finally, exosomes may also be internalized by the recipient cells by mechanisms such as endocytosis 12. Exosomes were isolated from a mast-cell line (MC/9), primary bone marrow-derived mast cells (BMMC) and a human mast-cell line (HMC-1) through a series of microfiltration and ultracentrifugation steps modified from what has been previously described 4. To confirm that the structures studied indeed are exosomes, they were examined by electron microscopy (Fig. 1a), flow cytometric analysis (FACS; Fig. 1b), and proteomic analysis (see Supplementary Information, Table S1). The electron micrographs of the exosomes revealed rounded structures with a size of approximately 50–80 nm, similar to previously described exo-somes 4,13–15. The identity of the studied vesicles was further confirmed as exosomes by FACS analysis (Fig. 1b), which show the presence of the surface protein CD63 — a commonly used marker of exosomes. Finally, extensive protein analysis of the MC/9 exosomes was performed on multiple samples using LC-MS/MS technology. A total of 271 proteins were identified (see Supplementary Information, Table S1) from three preparations of the isolated vesicles, of which 47 proteins were present in all three samples. More importantly, a large number of the proteins found in the preparations were the same as proteins previously identified in exosomes produced by other cells (that is, exosomes derived from intestinal epithelial cells, urine, dendritic cells, microglia, melanoma, T-cells and B-cells). In particular, 60% of the 47 proteins found in all samples of mast-cell exosomes have been previously found in other types of exosomes. Moreover, 39% of the 271 total proteins found in the analysed exosome samples have also been previously found in other types of exosomes. Thus, the electron microscopy, the FACS, and the detailed protein analyses each provided significant evidence in favour of the identification of the isolated vesicles as exosomes. The presence of nucleic acids was examined in exosomes derived from MC/9, BMMC and HMC-1 cells to define a potential mechanism by which exosomes may mediate cell–cell communication. These assessments showed that isolated exosomes contain no DNA (see Supplementary Information, Fig. S1). However, substantial amounts of RNA were detected by agarose gel electrophoresis, spectrophotometry
Article
Full-text available
Since the discovery of circulating microRNAs (miRNAs) in body fluids, an increasing number of studies have focused on their potential as non-invasive biomarkers and as therapeutic targets or tools for many diseases, particularly for cancers. Because of their stability, miRNAs are easily detectable in body fluids. Extracellular miRNAs have potential as biomarkers for the prediction and prognosis of cancer. Moreover, they also enable communication between cells within the tumor microenvironment, thereby influencing tumorigenesis. In this review, we summarize the progresses made over the past decade regarding circulating miRNAs, from the development of detection methods to their clinical application as biomarkers and therapeutic tools for cancer. We also discuss the advantages and limitations of different detection methods and the pathways of circulating miRNAs in cell-cell communication, in addition to their clinical pharmacokinetics and toxicity in human organs. Finally, we highlight the potential of circulating miRNAs in clinical applications for cancer.
Article
Full-text available
Chemotherapy has been reported to induce epithelial-mesenchymal transition (EMT) in tumor cells, which is a critical step in the process of metastasis leading to cancer spreading and treatment failure. However, the underlying mechanisms of chemotherapy-induced EMT remain unclear, and the involvement of microRNAs (miRNA) in this process is poorly understood. To address these questions, we established stable chemotherapy-resistant tongue squamous cell carcinoma (TSCC) cell lines CAL27-res and SCC25-res by exposing the parental CAL27 and SCC25 lines to escalating concentrations of cisplatin for 6 months. CAL27-res and SCC25-res cells displayed mesenchymal features with enhanced invasiveness and motility. MiRNA microarray illustrated that miR-200b and miR-15b were the most significantly downregulated microRNAs in CAL27-res cells. Ectopic expression of miR-200b and miR-15b with miRNA mimics effectively reversed the phenotype of EMT in CAL27-res and SCC25-res cells, and sensitized them to chemotherapy, but inhibition of miR-200b and miR-15b in the sensitive lines with anti-sense oligonucleotides induced EMT and conferred chemoresistance. Retrieving the expression of B lymphoma Mo-MLV insertion region 1 homolog (BMI1), a target for miR-200b and miR-15b, in the presence of the miRNA mimics by transfecting CAL27-res cells with pcDNA3.1–BMI1-carrying mutated seed sequences of miR-200b or miR-15b at its 3′-UTR recapitulated chemotherapy-induced EMT. In vivo, enforced miR-200b or miR-15b expression suppressed metastasis of TSCC xenografts established by CAL27-res cells. Clinically, reduced miR-200b or miR-15b expression was associated with chemotherapeutic resistance in TSCCs and poor patient survival. Our data suggest that reduced expression of miR-200b and miR-15b underscores the mechanisms of chemotherapy-induced EMT in TSCC, and may serve as therapeutic targets to reverse chemotherapy resistance in tongue cancers.
Article
Full-text available
Membrane vesicles released by neoplastic cells into extracellular medium contain potential of carrying arrays of oncogenic molecules including proteins and microRNAs (miRNA). Extracellular (exosome-like) vesicles play a major role in cell-to-cell communication. Thus, the characterization of proteins and miRNAs of exosome-like vesicles is imperative in clarifying intercellular signaling as well as identifying disease markers. Exosome-like vesicles were isolated using gradient centrifugation from MCF-7 and MDA-MB 231 cultures. Proteomic profiling of vesicles using liquid chromatography-mass spectrometry (LC-MS/MS) revealed different protein profiles of exosome-like vesicles derived from MCF-7 cells (MCF-Exo) than those from MDA-MB 231 cells (MDA-Exo). The protein database search has identified 88 proteins in MDA-Exo and 59 proteins from MCF-Exo. Analysis showed that among all, 27 proteins were common between the two exosome-like vesicle types. Additionally, MDA-Exo contains a higher amount of matrix-metalloproteinases, which might be linked to the enhanced metastatic property of MDA-MB 231 cells. In addition, microarray analysis identified several oncogenic miRNA between the two types vesicles. Identification of the oncogenic factors in exosome-like vesicles is important since such vesicles could convey signals to non-malignant cells and could have an implication in tumor progression and metastasis.
Article
Full-text available
Metastasis is a complex, multistep process involved in the progression of cancer from a localized primary tissue to distant sites, often characteristic of the more aggressive forms of this disease. Despite being studied in great detail in recent years, the mechanisms that govern this process remain poorly understood. In this study, we identify a novel role for miR-139-5p in the inhibition of breast cancer progression. We highlight its clinical relevance by reviewing miR-139-5p expression across a wide variety of breast cancer subtypes using in-house generated and online data sets to show that it is most frequently lost in invasive tumors. A biotin pull-down approach was then used to identify the mRNA targets of miR-139-5p in the breast cancer cell line MCF7. Functional enrichment analysis of the pulled-down targets showed significant enrichment of genes in pathways previously implicated in breast cancer metastasis (P < 0.05). Further bioinformatic analysis revealed a predicted disruption to the TGFβ, Wnt, Rho, and MAPK/PI3K signaling cascades, implying a potential role for miR-139-5p in regulating the ability of cells to invade and migrate. To corroborate this finding, using the MDA-MB-231 breast cancer cell line, we show that overexpression of miR-139-5p results in suppression of these cellular phenotypes. Furthermore, we validate the interaction between miR-139-5p and predicted targets involved in these pathways. Collectively, these results suggest a significant functional role for miR-139-5p in breast cancer cell motility and invasion and its potential to be used as a prognostic marker for the aggressive forms of breast cancer.
Article
Activation of mammalian innate and acquired immune responses must be tightly regulated by elaborate mechanisms to control their onset and termination. MicroRNAs have been implicated as negative regulators controlling diverse biological processes at the level of posttranscriptional repression. Expression profiling of 200 microRNAs in human monocytes revealed that several of them (miR-146a/b, miR-132, and miR-155) are endotoxin-responsive genes. Analysis of miR-146a and miR-146b gene expression unveiled a pattern of induction in response to a variety of microbial components and proinflammatory cytokines. By means of promoter analysis, miR-146a was found to be a NF-{kappa}B-dependent gene. Importantly, miR-146a/b were predicted to base-pair with sequences in the 3' UTRs of the TNF receptor-associated factor 6 and IL-1 receptor-associated kinase 1 genes, and we found that these UTRs inhibit expression of a linked reporter gene. These genes encode two key adapter molecules downstream of Toll-like and cytokine receptors. Thus, we propose a role for miR-146 in control of Toll-like receptor and cytokine signaling through a negative feedback regulation loop involving down-regulation of IL-1 receptor-associated kinase 1 and TNF receptor-associated factor 6 protein levels.
Article
MicroRNA-128 is down-regulated in glioma tissues, which regulates cell proliferation, self-renewal, apoptosis, angiogenesis and differentiation. This study aims at investigating the diagnostic value of serum miR-128 in human glioma. Real-time quantitative reverse transcriptase polymerase chain reaction was used to detect the expression levels of miR-128 in serum samples from 151 glioma patients, 59 postoperative patients, 52 meningioma patients and 53 normal donors. To analyze the association of miR-128 expression with clinicopathological parameters in serum samples and matched tissues, matched 151 glioma tissues were collected in the study. Receiver operating characteristic analysis (ROC) was utilized to evaluate the value of serum miR-128 as a biomarker for the early diagnosis of glioma. Results revealed that miR-128 expression was significantly decreased in glioma preoperative serum compared with normal controls and meningioma serum samples (both P < 0.001). ROC analyses showed that serum miR-128 levels were reliable in distinguishing patients with glioma from normal controls and meningioma, with the area under the curve (AUC) values of 0.9095 and 0.8283, respectively. In addition, the AUC value for discriminating glioma II-IV from I was 0.7362. Importantly, serum miR-128 expression was significantly elevated after surgery (P < 0.001), although it didn't reach to normal levels (P < 0.001). Furthermore, low miR-128 levels in serum and tissue were markedly correlated with high pathological grade and low Karnofsky Performance Status score (KPS). These findings proved that serum miR-128 could be a sensitive and specific biomarker of glioma.
Article
MicroRNAs are small non-coding RNAs with a central role in the post-transcriptional control of gene expression, that have been implicated in a wide-range of biological processes. Regulation of miRNA expression is increasingly recognized as a crucial part of the host response to infection by bacterial pathogens, as well as a novel molecular strategy exploited by bacteria to manipulate host cell pathways. Here, we review the current knowledge of bacterial pathogens that modulate host microRNA expression, focusing on mammalian host cells, and the implications of microRNAs (miRNA) regulation on the outcome of infection. The emerging role of commensal bacteria, as part of the gut microbiota, on host miRNA expression in the presence or absence of bacterial pathogens is also discussed.
Article
Cancer-secreted microRNAs (miRNAs) are emerging mediators of cancer-host crosstalk. Here we show that miR-105, which is characteristically expressed and secreted by metastatic breast cancer cells, is a potent regulator of migration through targeting the tight junction protein ZO-1. In endothelial monolayers, exosome-mediated transfer of cancer-secreted miR-105 efficiently destroys tight junctions and the integrity of these natural barriers against metastasis. Overexpression of miR-105 in nonmetastatic cancer cells induces metastasis and vascular permeability in distant organs, whereas inhibition of miR-105 in highly metastatic tumors alleviates these effects. miR-105 can be detected in the circulation at the premetastatic stage, and its levels in the blood and tumor are associated with ZO-1 expression and metastatic progression in early-stage breast cancer.
Article
microRNAs are endogenous small noncoding RNAs that regulate gene expression negatively at posttranscriptional level. This latest addition to the complex gene regulatory circuitry revolutionizes our way to understanding physiological and pathological processes in the human body. Here we investigated the possible role of microRNAs in the development of multidrug resistance (MDR) in gastric cancer cells. microRNA expression profiling revealed a limited set of microRNAs with altered expression in multidrug- resistant gastric cancer cell line SGC7901/VCR compared to its parental SGC7901 cell line. Among the downregulated microRNAs are miR-15b and miR-16, members of miR-15/16 family, whose expression was further validated by qRT-PCR. In vitro drug sensitivity assay demonstrated that overexpression of miR-15b or miR-16 sensitized SGC7901/VCR cells to anticancer drugs whereas inhibition of them using antisense oligonucleotides conferred SGC7901 cells MDR. The downregulation of miR-15b and miR-16 in SGC7901/VCR cells was concurrent with the upregulation of Bcl-2 protein. Enforced mir-15b or miR-16 expression reduced Bcl-2 protein level and the luciferase activity of a BCL2 3' untranslated region-based reporter construct in SGC7901/VCR cells, suggesting that BCL2 is a direct target of miR-15b and miR-16. Moreover, overexpression of miR-15b or miR-16 could sensitize SGC7901/VCR cells to VCR-induced apoptosis. Taken together, our findings suggest that miR-15b and miR-16 could play a role in the development of MDR in gastric cancer cells at least in part by modulation of apoptosis via targeting BCL2.