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Designation of a neotype for brook trout, Salvelinus fontinalis

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The taxonomic status of Salvelinus fontinalis (Mitchill) is problematic. Difficulties in comparison of populations are exacerbated by the lack of type material. Here we designate a neotype from Connetquot River, Long Island, New York. We provide genetic and morphological data for the neotype, conspecifics, and other populations (Swan Creek, Nissequogue Creek) from Long Island, New York. We demonstrate, using molecular markers, that the population from Connetquot River most likely has not been influenced by the major broodstock strains utilized in the Northeast for supplemental and restorative stocking programs. We distinguish the above populations morphologically from lower interior basin populations, represented by fishes from the Pigeon-French Broad drainage, North Carolina and Tennessee. Finally, we position populations from Long Island, New York, within six distinct lineages of S. fontinalis.
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Designation of a neotype for brook trout, Salvelinus fontinalis
Author(s): Jay R. Stauffer, Jr. and Timothy L. King
Source: Proceedings of the Biological Society of Washington, 127(4):557-567.
2015.
Published By: Biological Society of Washington
DOI: http://dx.doi.org/10.2988/0006-324X-127.4.557
URL: http://www.bioone.org/doi/full/10.2988/0006-324X-127.4.557
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Designation of a neotype for brook trout, Salvelinus fontinalis
Jay R. Stauffer, Jr.* and Timothy L. King
(JRS) Ecosystem Science and Management, The Pennsylvania State University, University Park,
Pennsylvania 16802, U.S.A., e-mail: vc5@psu.edu;
(TLK) U.S. Geological Survey, Leetown Science Center, 11649 Leetown Road, Kearneysville,
West Virginia 25430, U.S.A.
Abstract.—The taxonomic status of Salvelinus fontinalis (Mitchill) is
problematic. Difficulties in comparison of populations are exacerbated by
the lack of type material. Here we designate a neotype from Connetquot
River, Long Island, New York. We provide genetic and morphological data
for the neotype, conspecifics, and other populations (Swan Creek, Nisse-
quogue Creek) from Long Island, New York. We demonstrate, using
molecular markers, that the population from Connetquot River most likely
has not been influenced by the major broodstock strains utilized in the
Northeast for supplemental and restorative stocking programs. We distin-
guish the above populations morphologically from lower interior basin
populations, represented by fishes from the Pigeon-French Broad drainage,
North Carolina and Tennessee. Finally, we position populations from Long
Island, New York, within six distinct lineages of S. fontinalis.
Keywords: brook trout, neotype, New York, Salvelinus fontinalis
The brook trout, Salvelinus fontinalis
(Mitchill), evolved a great variety of life
history, developmental and physiological
traits in response to a broad range of
habitats. Populations of brook trout are
native to headwater streams and cold-
water lakes of the Mississippi River
drainage east to the Atlantic Slope drain-
ages; they are found from northeastern
Canada south through the Great Lakes
and into the southern Appalachian moun-
tains (Power 1980). The geological history
of this region reveals numerous events
(Hocutt et al. 1986) that would serve to
isolate fish populations, including exten-
sive glacial impoundment and stream
captures in the northern parts of its range,
and montane glaciations and stream cap-
tures affecting southern populations.
Brook trout, along with most other
salmonids, show exceptional levels of life-
history variation (e.g., resident and migra-
tory types often co-occur). Upon reaching
sexual maturity individuals undergo dra-
matic morphological (e.g., male kype
formation), physiological, and behavioral
adaptations. This life-history variation
appears to be influenced by complex
interactions between genetic and environ-
mental factors (Hendry et al. 2004).
Anthropogenic disturbances and climate
change have resulted in the proliferation of
demographically small isolated popula-
tions, thus, providing the opportunity to
study the accumulation of phenetic and
genetic traits in allopatric populations.
Additionally, the overlapping transloca-
tion of isolated populations into new areas
permits the study of reproductive isolation
of introduced populations in natural envi-
ronments.
Salvelinus fontinalis was described from
Long Island, New York (Mitchill 1814).
Unfortunately, neither type material nor a
* Corresponding author.
PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON
127(4):557–567. 2014.
type locality were designated. Mitchill
(1815:438) further described the brook
trout as a ‘‘most dainty fish’’ that lives in
running waters; however, he also reported
fish that weighed in excess of two kg.
Certainly, there were both resident and
sea-run individuals present on Long
Island during this time. Behnke (1980)
posed the question of whether there were
distinct northern and southern groups of
brook trout, or a single homogenous
stock established since the last glacial
retreat during the Pleistocene. Morgan &
Danzmann (1997, 2001) and Hall et al.
(2002) suggested high mtDNA RFLP
diversity within, and differentiation
among, brook trout populations in the
mid-Atlantic when compared to northern
populations analyzed previously (Jones et
al. 1997, Danzmann et al. 1998). By
contrast, brook trout from the mid-
Atlantic region belong to five of the six
established mtDNA assemblages (Mor-
gan & Danzmann 1997, 2001; Danzmann
et al. 1998, Hall et al. 2002). Additionally,
most allozyme-based studies of popula-
tions from the southern Appalachians
have produced evidence that genetic
diversity is relatively high in this region
of the native range of brook trout
(McCracken et al. 1993, Hayes et al.
1996, Kriegler et al. 1995). Surveys of
microsatellite DNA, however, suggest less
allelic diversity in the southeast portion of
the species’ range (Richards et al. 2008).
In order to determine species status within
this complex lineage, it is necessary to
have a reference point to which these
other native populations can be com-
pared. It is the purpose of this paper to
designate a neotype for S. fontinalis from
Long Island and redescribe the species.
Materials and Methods
Fishes were collected on Long Island
with the aid of a New York Department of
Environmental Conservation crew led by
Charles Guthrie at the following localities:
Nissequogue Creek 40849.610390N,
073813.5930W; Swan Creek 40846.5510N,
072859.62380W; and Connetquot River
40847.17140N, 073810.13340W. We used
brook trout from the Pigeon-French
Broad system, located in Great Smoky
Mountains National Park (GRSM), Ten-
nessee to use as representatives of the
LowerInteriorBasinforcomparative
purposes. Specifically, we collected fishes
from Indian Camp Creek 35844.2650N,
083816.6740W; Cosby Creek 35844.8810N,
083812.0200W; and Greenbrier Creek
35845.92470N, 083815.22720W. All fish
were collected by backpack electro-shock-
ing. All sites in the Lower Interior Basin
were above 680 m altitude. All fish were
anesthetized with clove oil, euthanized in
1%formalin, pinned in trays so that the
bodies were flat and the fins erect, pre-
served in 10%formalin, and placed in
permanent storage in 70%ethanol. Pig-
mentation patterns and color were record-
ed in the field via direct observation.
Counts and measurements follow Stauffer
(1991). All counts and measurements were
taken from non-spawning specimens from
the left side of the body with the exception
of gill-raker counts, which were taken on
the right side. Fin-clips were preserved in
99%ethanol.
Morphometric data were analyzed us-
ing a sheared principal component anal-
ysis, which factors the covariance matrix
and restricts size variation to the first
principal component (Humphries et al.
1981, Bookstein et al. 1985). Meristic
data were analyzed using a principal
component analysis in which the correla-
tion matrix was factored. Differences
among populations were illustrated by
plotting the sheared second principal
components (SPC2) of the morphometric
data against the first principal compo-
nents (PC1) of the meristic data (Stauffer
& Hert 1992).
We brought fin tissue samples to the
United States Geological Survey (USGS)
558 PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON
Leetown Science Center, Kearneysville,
West Virginia, for molecular analyses.
Genomic DNA was extracted from tissue
using the Puregene Kit (Gentra Systems,
Minneapolis, Minnesota). All samples were
screened for 13 microsatellite loci designed
specifically for brook trout (SfoB52,
SfoC24, SfoC28, SfoC38, SfoC79, SfoC86,
SfoC88, SfoC113, SfoC115, SfoC129,
SfoD75, SfoD91, SfoD100; King et al.
2012). Details of the master mix composi-
tion, thermal cycling parameters, and mul-
tiplexing are provided in King et al. (2012).
PCR amplifications were performed on
either PTC-200 or PTC-225 thermal cyclers
(Bio-Rad Laboratories, Hercules, Califor-
nia), and microsatellite allele sizes were
determined on an Applied Biosystems
(Foster City, California) ABI 3130. Genetic
Analyzer GeneScan 3.7 and GeneMapper
Fragment Analysis software (Applied Bio-
systems) were used to score, bin, and output
allelic data.
No records indicate fish being stocked
into the Long Island, New York streams.
We used GeneClass (Cornuet et al. 1999)
to determine the probability of each
individual collected having genotypes
found among seven potential hatchery
source populations (Table 1) used for
supplementation in the northern Atlantic
Slope region. Because detailed records of
supplementation were not available for the
Long Island, New York strains, we as-
sumed any hatchery source could have
been stocked in any drainage and, there-
fore, tested for the presence of the most
commonly stocked hatchery strains. Pop-
ulation allele frequencies were estimated in
GeneClass using the Bayesian option
(Rannala & Mountain 1997). The proba-
bility that an individual belonged to one of
the hatchery populations was calculated by
simulating 10,000 genotypes and calculat-
ing the probability of the individuals
genotyped being observed in that simulat-
ed hatchery population. While no fish was
determined to be of stocked origin based
on assignment testing, a principal coordi-
nates analysis, PAST (Hammer et al.
2001), was utilized to compare the propor-
tion of shared alleles distance among all
individuals.
The evolutionary relationships among
brook trout collections from throughout
its range (Table 2) were visualized through
the construction of a Neighbor-Joining
tree (Saitou & Nei 1987). Genetic distances
between each pair of collections were
summarized with genetic distance matrices
calculated using the Cavalli-Sforza &
Edwards (1967) chord distance in MEGA5
(Tamura et al. 2011). The strength of
support for each node in the phylogenetic
tree was tested by bootstrapping over loci
using njbpop (J.-M. Cornuet, INRA,
Montpellier, France).
Results
Populations inhabiting the North Atlan-
tic Slope (represented by fish from Long
Island, New York) were distinguished from
those populations that 1) sea run, 2) inhabit
the North Atlantic slope, 3) inhabit the St.
Lawrence River and the Great Lakes
drainages, 4) inhabit the Upper Interior
Basin (Ohio River), 5) inhabit the southern
Atlantic Slope, and 6) inhabit the lower
interior basin (Ohio River) (Fig. 1). Ordi-
nation of the inter-individual genetic dis-
tance suggested that some degree of
relatedness (overlap) existed between some
putative wild individuals from Nissequogue
Creek and fish from the Bellefonte (Penn-
Table 1.—Hatchery brook trout stocks utilized for
comparisons to putative wild collections.
Hatchery strain State
Year
sampled
Sample
size
Phillips Hatchery Maine 2005 60
Sandwich Hatchery Massachusetts 2003 37
Hyde Pond Strain New York 2005 35
Mountain Pond Strain New York 2005 31
Big Hill Pond Strain New York 2005 55
Rome Hatchery New York 2005 50
Bellefonte Hatchery Pennsylvania 2004 31
VOLUME 127, NUMBER 4 559
Table 2.—List of collections included in a range-wide genetic analysis at 13 microsatellite DNA loci in brook trout (Salvelinus fontinalis). The survey consists of
fish sampled from 18 locations representing at least six of the major phylogeographic groupings within the species’ range. Results of the comparison are presented
in a neighbor-joining tree (Fig. 1).
Major drainage Primary drainage General location Year sampled #fin clips sampled
Atlantic Ocean Freshwater R. Freshwater River 2000 50
Atlantic Ocean Watern Cove Watern Cove 2000 36
Hudson Bay Lake Mistassini Pepeshquasati River 2000 50
Hudson Bay Lake Mistassini Cheno River 2000 43
Gulf of Maine Bass Harbor/Eastern Passage Marshall Brook 2002 56
Gulf of Maine Bracy Cove/Eastern Way Jordan Stream 2002 50
Atlantic Ocean Great South Bay Nissequogue Creek 2010 30
Atlantic Ocean Great South Bay Swan Creek 2010 30
Atlantic Ocean Great South Bay Connetquot River 2010 30
St. Lawrence R. Lake Superior Grace Creek 1994 29
St. Lawrence R. Lake Superior Tobin Harbor 1996 56
Pee Dee R. Yadkin R./Pee Dee R. Harris Creek 2006 20
Pee Dee R. Yadkin R./Pee Dee R. Mitchell River 2004 20
Mississippi R. Youghiogheny R./Monongahela R./Ohio R. Puzzley Run 1998 49
Mississippi R. Youghiogheny R./Monongahela R./Ohio R. Little Bear Creek 1999 49
Mississippi R. Pigeon R./French Broad R./Holston R./Tennessee R./Ohio R. Cosby Creek 2004 48
Mississippi R. Pigeon R./French Broad R./Holston R./Tennessee R./Ohio R. Greenbrier Creek 2004 27
Mississippi R. Pigeon R./French Broad R./Holston R./Tennessee R./Ohio R. Indian Camp Creek 2000 33
560 PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON
sylvania) and Rome (New York) hatchery
strains. No overlap of populations from
Swan Creek and Connetquot River with
hatchery stocks existed (Fig. 2). Thus, we
chose the neotype from Connetquot River,
Long Island, New York.
Salvelinus fontinalis (Mitchill)
Neotype.—PSU 11387, 178.8 mm SL,
collected by Charles Guthrie and Rachel
Yoder, Connetquot River, Connetquot
River State Park, 40847.17140N,
073810.13340W, Long Island, New York,
13 Jul 2010.
Material examined.—Nine specimens,
PSU 11388, 103.6–166.1 mm SL; collection
data as for neotype. Ten specimens, PSU
11389, 130.1–206.3 mm SL, collected by
Charles Guthrie and Rachel Yoder, Nisse-
quogue Creek at Blydenburgh County
Park Office, Long Island, New York, 14
Jul 2010. Ten specimens, PSU 11390,
123.9–170.1 mm SL, collected by Charles
Guthrie and Rachel Yoder, Swan Creek at
end of Roberts Street, Long Island, New
York, 13 Jul 2010.
Description of neotype.—The brook
trout is a member of the subgenus Baione;
as such it possesses minute teeth on the
maxillaries and intermaxillaries, a patch of
minute teeth on the vomer, and a series of
teeth on the outer edges of the tongue (De
Kay 1842). Populations from Long Island
have isognathous jaws, which form a
terminal mouth that differentiates it from
Fig. 1. Evolutionary relationships of brook trout Salvelinus fontinalis genotyped at 13 microsatellite loci
inferred using the neighbor-joining algorithm (Saitou & Nei 1987) applied to the Cavalli-Sforza & Edwards
(1967) chord distance for 18 collections representing six phylogeographically distinct assemblages (sea run,
northern Atlantic slope, St. Lawrence-Great Lakes, upper interior basin/Ohio River, southern Atlantic slope,
and lower interior basin/Ohio River). The phylogenetic tree was generated using njbpop (J.-M. Cornuet,
INRA, Montpellier, France). Numbers along branches represent bootstrap support for nodes generated from
5000 randomizations. The tree is drawn to scale, with branch lengths in the same units as those of the
evolutionary distances used to infer the phylogenetic tree. Abbreviations: L. ¼Lake, MD ¼Maryland, ME ¼
Maine, NC ¼North Carolina, NP ¼National Park, NY ¼New York, TN ¼Tennessee.
VOLUME 127, NUMBER 4 561
southern populations represented by fishes
from the Lower Interior Basin, which have
retrognathous jaws that form a slightly
inferior mouth.
Jaws isognathous; teeth on upper and
lower jaws and on vomer. Lateral line
scales 109–138, neotype with 119; pored
scales posterior to lateral-line terminus at
hypural plate 5–10. Gill rakers on first
ceratobranchial 8–10, neotype 10. Princi-
pal morphometric data and meristic data
are shown in Tables 3 and 4, respectively.
Differentiation.—We present data that
Salvelinus fontinalis, genotyped at 13 mi-
crosatellite loci (Table 2), demonstrates at
least six phylogeographically distinct as-
semblages (sea run, northern Atlantic
slope, St. Lawrence-Great Lakes, upper
interior basin/Ohio River, southern Atlan-
tic slope, and lower interior basin/Ohio
River).
We further show morphological distinc-
tion of populations from Long Island from
the lower interior basin populations from
Great Smoky Mountains National Park
(Tables 5, 6). The plot of the sheared
second principal component of the mor-
phometric data versus the first principal
component of the meristic data shows that
the minimum polygon cluster formed by
fishes from Long Island, New York, does
not overlap with that formed by those
collected in the Pigeon-French Broad
Basin in Great Smoky Mountains Nation-
al Park (Fig. 3). Variables with the highest
standardized scoring coefficients for the
meristic data were pored scales posterior
to the lateral line (0.27), teeth on the lower
jaw (0.26), and lateral-line scales (0.26).
Size accounted for 95%of the observed
variance and the second principal compo-
nent for 31%of the remaining variation.
Variables with the highest loadings on the
sheared second principal component were
dorsal-fin base length (0.37), lower jaw
Fig. 2. Principal coordinates analysis depicting the relationship of the pairwise proportion of shared
alleles distances from a survey of 13 microsatellite DNA markers among selected regional brook trout
Salvelinus fontinalis hatchery strains and three wild collections (Nissequogue Creek, Swan Creek, and
Connetquot River) sampled from Long Island, New York.
562 PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON
Table 3.—Morphometric data of brook trout, Salvelinus fontinalis, from Long Island, New York streams.
Neotype
Connetquot River Nissequogue Creek Swan Creek
¯
XSD Range ¯
XSD Range ¯
XSD Range
Standard length, mm 170.8 152.8 19.7 103.6–170.8 160.0 24.9 130.1–206.3 149.7 15.3 123.9–170.1
Head length, mm 45.2 39.0 5.3 27.4–46.0 42.1 6.0 32.8–51.9 38.8 4.2 32.9–45.6
Percent standard length
Body depth 25.4 25.1 1.3 23.5–28.1 23.3 1.2 21.1–25.2 25.1 1.2 23.7–27.3
Snout to dorsal-fin origin 47.0 46.0 0.8 44.7–47.0 47.5 1.2 45.2–49.7 46.7 1.3 44.5–48.5
Snout to pelvic-fin origin 52.6 50.8 1.6 48.4–53.6 53.6 1.4 51.8–56.0 51.7 1.7 48.2–53.9
Dorsal-fin base length 17.6 17.3 1.4 15.7–20.1 14.6 0.8 12.7–15.5 16.6 1.2 14.7–19.0
Anterior dorsal to anterior anal 37.7 37.2 1.0 35.7–39.3 36.0 1.0 34.3–38.1 36.6 0.7 35.6–37.7
Anterior dorsal to posterior anal 46.5 44.4 1.0 43.1–46.5 42.5 1.2 41.0–44.3 43.4 0.9 41.8–44.7
Posterior dorsal to anterior anal 24.9 24.2 1.0 22.6–25.9 24.1 0.8 22.8–25.4 23.9 0.8 22.5–25.3
Posterior dorsal to posterior anal 29.9 29.4 0.8 28.1–31.0 29.4 1.0 28.3–31.0 28.6 0.8 27.3–29.6
Posterior dorsal to ventral caudal 43.1 42.6 1.1 41.1–44.0 41.8 1.1 39.3–43.3 42.4 0.9 41.1–44.0
Anterior adipose to posterior anal 15.6 14.4 1.1 13.3–16.1 13.2 0.4 12.4–13.8 13.4 0.6 12.7–14.4
Posterior anal to dorsal caudal 20.6 20.3 0.9 18.6–21.5 18.8 1.1 17.9–21.4 19.6 0.6 18.4–20.6
Anterior dorsal to pelvic-fin origin 27.1 25.6 1.5 23.4–28.4 23.7 0.9 22.5–25.0 25.2 1.1 23.8–27.4
Posterior dorsal to pelvic-fin origin 25.9 24.4 1.3 22.5–26.4 22.2 1.0 20.7–23.7 24.0 0.9 22.7–25.3
Caudal-peduncle length 16.3 16.7 0.8 15.3–18.1 15.2 1.1 13.2–17.2 16.3 0.9 14.9–17.6
Least caudal-peduncle depth 11.6 10.6 0.7 10.0–11.8 10.6 0.5 10.0–11.3 10.6 0.7 9.3–11.8
Percent head length
Snout length 23.3 22.8 1.1 21.4–25.2 23.9 1.6 21.4–26.8 22.9 1.6 20.0–25.2
Postorbital head length 54.1 51.2 1.5 49.4–54.1 49.7 2.0 45.5–52.8 51.3 2.1 47.1–53.3
Horizontal eye diameter 25.6 27.5 1.5 25.6–29.6 28.4 2.0 24.0–31.1 28.5 1.6 26.9–31.6
Vertical eye diameter 22.3 24.6 1.8 21.7–28.1 25.7 1.6 22.8–27.8 24.8 1.9 22.9–29.2
Lower-jaw length 68.3 68.9 2.9 64.8–74.2 70.3 4.0 65.1–75.4 65.1 3.4 60.0–71.1
Head depth 63.7 66.5 3.2 62.8–72.4 66.7 2.7 63.6–71.0 64.8 3.6 57.5–69.5
VOLUME 127, NUMBER 4 563
length (0.36), and vertical eye diameter
(0.28).
Discussion
In Article 75.3 of the International Code
of Zoological Nomenclature (http://www.
nhm.ac.uk/hosted-sites/iczn/code/index.
jsp?article¼75&nfv¼true) it states that a
neotype is validly designated when the
express purpose is to 1) clarify the taxo-
nomic status or the type locality of a
nominal taxon (75.3.1); 2) a statement of
the characters differentiating the neotype
from other taxa (75.3.2); 3) present data
that is sufficient to ensure recognition of
the neotype (75.3.3); 4) statement of
Table 5.—Morphometric data of brook trout, Salvelinus fontinalis, from the French Broad Drainage in
Great Smoky Mountains National Park.
¯
XSD Range
Standard length, mm 104.3 15.6 78.5–156.6
Head length, mm 27.7 5.2 19.7–43.8
Percent standard length
Body depth 24.3 2.2 19.9–30.8
Snout to dorsal-fin origin 47.8 1.2 44.9–49.8
Snout to pelvic-fin origin 51.3 1.0 49.5–54.1
Dorsal-fin base length 15.4 1.2 13.5–17.0
Anterior dorsal to anterior anal 35.8 1.4 32.8–39.7
Anterior dorsal to posterior anal 42.7 1.1 40.7–45.0
Posterior dorsal to anterior anal 22.4 1.1 20.1–24.5
Posterior dorsal to posterior anal 27.8 107 21.8–30.2
Posterior dorsal to ventral caudal 40.4 1.7 37.1–43.8
Anterior adipose to posterior anal 18.0 1.2 15.6–20.6
Posterior anal to dorsal caudal 19.1 1.1 17.0–21.9
Anterior dorsal to pelvic-fin origin 24.0 1.7 21.2–29.9
Posterior dorsal to pelvic-fin origin 21.5 1.5 19.1–24.5
Caudal-peduncle length 16.3 1.3 13.9–19.8
Least caudal-peduncle depth 10.7 5.7 10.0–11.9
Percent head length
Snout length 21.6 1.8 18.6–25.2
Postorbital head length 48.5 2.5 43.9–53.1
Horizontal eye diameter 32.0 2.3 28.0–36.5
Vertical eye diameter 28.5 2.5 24.8–33.9
Lower-jaw length 63.2 5.8 53.1–76.0
Head depth 67.5 4.1 60.2–75.3
Table 4.—Meristic data of brook trout, Salvelinus fontinalis, from Long Island, New York streams.
Counts Neotype
Connetquot River Nissequogue Creek Swan Creek
Mode %Freq. Range Mode %Freq. Range Mode %Freq. Range
Dorsal-fin rays 12 12/13 40 11–14 13 50 9–13 13 40 11–13
Anal-fin rays 10 10 100 10 10 90 10–11 11 50 10–12
Pectoral-fin rays 14 13 60 12–14 14 60 12–14 14 60 13–14
Pelvic-fin rays 10 9 70 9–10 9 70 9–10 10 70 8–10
Lateral-line scales 119 127 20 111–138 117 30 112–130 116 20 109–130
Pored scales posterior to lateral line 6 6 50 5–8 5 60 5–6 6 40 5–10
Gill rakers on first ceratobranchial 10 9 50 8–10 9 60 8–9 8 100 8
Gill rakers on first epibranchial 6 5/6 50 5–6 6 60 6–7 5 60 5–6
Teeth in outer row of left lower jaw 15 16 50 15–17 17 50 17–19 18 40 16–19
Parr marks 7 7 60 7–8 8 80 8–10 8 50 6–9
564 PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON
reasons for believing the name-bearing
type specimen was lost or destroyed
(75.3.4); 5) provide evidence that the
neotype is consistent with the known
name-bearing type from the original de-
scription (75.3.5); and 6) provide evidence
that the neotype came from as near as
possible to the type locality.
Certainly the taxonomic status of pop-
ulations of S. fontinalis must be examined
further. To facilitate these studies, we
provide genetic and morphological data
for the neotype and associated populations
from Long Island, New York. We further
show allelic diversity throughout the range
and have differentiated the Long Island
populations morphologically from Interior
Basin populations. We supply both genetic
and morphological characters to describe
and ensure recognition of the neotype. A
type specimen of this taxon was never
preserved or catalogued into a museum.
Finally, we collected the neotype from
localities where the collections were made
upon which the original description was
based and demonstrated that there was no
discernable evidence that hatchery stocks
had altered the genetic composition of
these populations.
Acknowledgments
We want to especially thank Charles
Guthrie, New York Department of Envi-
ronmental Conservation, who organized a
crew and arranged for the collecting of fish
on Long Island, New York. We thank
Rachel Yoder for aiding in the collection
of fish. Fish were collected under the
approved IACUC 40122 research pro-
gram.
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Teeth in outer row of left lower jaw 13 8–15
Parr marks 9 6–11
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Associate Editor: Jeffrey T. Williams.
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... We have considerable concerns about the analysis and interpretation of the data used by Stauffer (2020) and question the validity of the three proposed species. Most notably, the proposed species in Tennessee were described from a sample size of just ten individuals, which were compared only to Brook Trout populations in New York described in Stauffer and King (2014). In addition to lacking sufficient statistical power, limited comparisons to published species accounts disregard the natural variation in phenotypes that occurs within populations and at regional and range-wide scales. ...
... Data sources used for comparisons.-We compare data presented in Stauffer (2020) to: 1) data presented in Stauffer and King (2014) that were used to describe the neotype of S. fontinalis from Long Island, New York (Fig. 1A), 2) independent meristic counts from 38 Brook Trout populations located in the GSMNP described by Weathers et al. (2019;Fig. 1B), and 3) trait data reported in peer-reviewed literature and governmental agency reports. ...
... We contacted the author, who provided the original, individual-level data used in Stauffer (2020) and the individual-level data from Stauffer and King (2014) from populations in New York. However, analysis of the individual-level data failed to reproduce many of the summary statistics reported in the data tables presented in Stauffer (2020), and the number of vertebrae and basihyal teeth were absent. ...
Article
It was recently proposed that there are three new species of Salvelinus with microendemic distributions in the Great Smoky Mountains National Park, Tennessee, USA. The three species of Salvelinus were hypothesized to be distinct from their congener Brook Trout S. fontinalis based on three meristic traits—pored lateral-line scales, vertebral counts, and number of basihyal teeth. After analyses that included specimens sampled from a larger portion of the geographic range of S. fontinalis, we conclude that the three populations of Salvelinus recently described as new species are not morphometrically distinct from Brook Trout and consider all three to be synonyms of S. fontinalis. Moreover, the low number of specimens originally examined conflates morphological differences among populations with sexual dimorphism and/or phenotypic plasticity, both of which are documented extensively in Brook Trout but were not controlled for in the species descriptions. While there is currently insufficient phenotypic or genotypic evidence to support the hypothesis of three new species that are distinct from S. fontinalis, we acknowledge the need to understand the unique selection pressures that shape evolutionary trajectories in small, isolated populations of Brook Trout and to conserve evolutionarily significant sources of genotypic and phenotypic diversity. To that end, we provide comments on research opportunities to support Brook Trout conservation, including the importance of collaborative, range-wide phylogenetic studies to identify the most appropriate scales of management efforts.
... We attempted to collect 30 individuals (n = 10 for phenotype and genotype samples; n = 20 for genotype-only samples) across a majority of available allopatric Brook Trout habitat from each sampled stream. Our sample sizes were similar to those used in other Brook Trout population genetic studies (see Ruzzante et al. 2016;Timm et al. 2016;Nathan et al. 2017) and phenotype investigations (see Rouleau et al. 2010;Stauffer and King 2015). We obtained individual genetic tissue (i.e., adipose fin clips) and whole-body phenotype specimens across each sampled stream's available habitat (mean allopatric stream distance occupied = 1,706 m; range = 663-4,434 m), thus minimizing potential familial overrepresentation bias (Luikart et al. 2010) within each collection. ...
... To assess morphological variation among Brook Trout populations, we conducted truss-network-sheared (McCoy et al. 2006) morphometric principal components analysis (PCA) based on a variance-covariance matrix (Stauffer and King 2015) in PAST version 3.12 (Hammer et al. 2001). Use of this approach generated a succession of ranked orthogonal axes (i.e., principal components [PCs]) that explained continuous morphometric variation (Rohlf 1993), in which the first PC of morphology (morphPC 1 ) was expected to reflect variation in body size. ...
... Use of this approach generated a succession of ranked orthogonal axes (i.e., principal components [PCs]) that explained continuous morphometric variation (Rohlf 1993), in which the first PC of morphology (morphPC 1 ) was expected to reflect variation in body size. In addition, meristic PCA (Stauffer and King 2015) was conducted in PAST version 3.12 based on a correlation matrix (independent of size and shape; Turan et al. 2006). We examined patterns of phenotypic variability independently of body size; consequently, we retained scores from morphometric PCs 2-4 (morphPC 2-4 ) and meristic PCs 1-3 (merPC 1-3 ) for all subsequent analyses. ...
... Recent and ongoing studies have found strong differences in wild brook trout genetics among regions (Hall et al. 2002;Stauffer and King 2014), and also among geographically proximate wild populations (Annett et al. 2012, Whitley et al. 2013. Nearly all brook trout that were stocked across the southeastern United States are thought to have descended from northeastern U.S. populations (Kriegler et al. 1995). ...
... Hatchery collections were compared with previously identified major phylogeographic assemblages (Stauffer and King 2014), including those from the northeastern United States and southern Appalachians, using a neighbor-joining tree to determine their likely ancestry. We used GenAlEx 6.502 Smouse 2006, 2012) to calculate withinpopulation diversity statistics for each collection. ...
... The Pee Dee watershed appears to have been least influenced by the stocking of hatchery fish, although not all pairwise comparisons among drainages were statistically significant. Fig. 2 Evolutionary relationships of 17 hatchery brook trout collections (shown in bold) relative to the six major phylogeographic clades shown in Stauffer and King (2014), derived using the neighbor-joining method (Saitou and Nei 1987) applied to Cavalli-Sforza and Edwards (1967) chord distance and visualized using MEGA7 (Kumar et al. 2016) ...
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The release of hatchery-origin fish into streams with endemics can degrade the genetics of wild populations if interbreeding occurs. Starting in the 1800s, brook trout descendent from wild populations in the northeastern United States were stocked from hatcheries into streams across broad areas of North America to create and enhance fishery resources. Across the southeastern United States, many millions of hatchery-origin brook trout have been released into hundreds of streams, but the extent of introgression with native populations is not well resolved despite large phylogeographic distances between these groups. We used three assessment approaches based on 12 microsatellite loci to examine the extent of hatchery introgression in 406 wild brook trout populations in North Carolina. We found high levels of differentiation among most collections (mean F′ST = 0.718), and among most wild collections and hatchery strains (mean F′ST = 0.732). Our assessment of hatchery introgression was consistent across the three metrics, and indicated that most wild populations have not been strongly influenced by supplemental stocking. However, a small proportion of wild populations in North Carolina appear to have been strongly influenced by stocked conspecifics, or in some cases, may have been founded entirely by hatchery lineages. In addition, we found significant differences in the apparent extent of hatchery introgression among major watersheds, with the Savannah River being the most strongly impacted. Conversely, populations in the Pee Dee River watershed showed little to no evidence of hatchery introgression. Our study represents the first large-scale effort to quantify the extent of hatchery introgression across brook trout populations in the southern Appalachians using highly polymorphic microsatellite markers.
... The measurement of the plastic and meristic characteristics was performing according to the scheme proposed by Pravdin (1966). The identification keys of Bacon (1954), Karas (1997), Kottelat & Freyhof (2007), Martinez (1984) and Stauffer & King (2014) were used. ...
... The combination of morphological characteristics and specific body coloration allow for the definitive conclusion that the adult fish found in the uppermost section of the Palakaryia River are in fact brook trout and not any other synoptic species (Karas, 1997;Kottelat & Freyhof, 2007;Page & Burr, 1991;Scott & Crossman, 1973;Stauffer & King, 2014). The identification of the smallest brook trout (< 6-7 cm) was made on the basis of the length of the pectoral fins and the length and pigmentation of the adipose fin (Bacon, 1954;Martinez, 1984). ...
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In the present study, we provide data on the first established, self-sustaining population of non-native brook trout (Salvelinus fontinalis Mitchill, 1814), family Salmonidae, in Bulgaria. The brook trout was detected in upland section of the Palakariya River (Iskar basin) at an altitude between 1350 and 1500 m a.s.l. Distribution, abundance and size structure of S. fontinalis were studied in the period 2019-2021. The coexistence of individuals of different sizes (from 4.1 cm to 24.6 cm); no restocking activities in the last 10 years and the suitable environmental habitat features support the contention of a self-reproducing population of S. fontinalis in the Palakariya River.
... Brook Trout truly represent a salmonid species where there are major questions as to genetic structure throughout its native range. Stauffer and King [46] distinguished populations that were sea run, from the North Atlantic Slope, from the St. Lawrence River and the Great Lakes drainages, from the upper interior basin, from the southern Atlantic Slope, and from the lower interior basin. ...
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The determination of endangered species is problematic. If one considers a species to be ontological individuals, then if a species goes extinct, it is gone forever. The Brook Trout is used as an example of a “species” which may be comprised of several unique entities that warrant a specific status. In addition to determining the specific status, it is difficult to determine how to place a monetary value on endangered species that do not have a general appeal to the public (e.g., many bird species), a commercial value, no known medical properties (e.g., deep water sponges vs. cancer), or generate monies for recreation. Perhaps if we could identify the unique information carried by a particular species, we could place a value on that information and assess the monetary value of the information lost.
... There are numerous and substantial pressures that make it critical to document relationships among salmonid populations and to characterize potential threats to the genetic integrity of extant populations, especially for Brook Trout. With increasing interest in Brook Trout, numerous studies have addressed eastern Brook Trout genetics (e.g., Hayes et al. 1996;Danzmann 1997, 1998;Danzmann et al. 1998;Hall et al. 2002;Stauffer and King 2014;Aunins et al. 2015;Kazyak et al. 2015Kazyak et al. , 2016Buonaccorsi et al. 2017;Bruce et al. 2018;Nathan et al. 2018;Pregler et al. 2018;Weathers et al. 2018). However, key spatial gaps in genetic structure remain unaddressed throughout the native range of eastern Brook Trout, particularly in the mid-Atlantic region, consisting of New York; New Jersey; Pennsylvania; Delaware; Maryland; Washington, D.C.; Virginia; and West Virginia. ...
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Brook Trout Salvelinus fontinalis have declined across their native range due to multiple anthropogenic factors, including landscape alteration and climate change. Although coldwater streams in the State of Maryland (eastern United States) historically supported significant Brook Trout populations, only fragmented remnant populations remain with the exception of the upper Savage River watershed in western Maryland. Using microsatellite data from 38 collections, we defined genetic relationships of Brook Trout populations in Maryland drainages. Microsatellite analyses of Brook Trout indicated the presence of five major discrete units, defined as the Youghiogheny (Ohio), Susquehanna, Patapsco/Gunpowder, Catoctin, and the Upper Potomac, with a distinct genetic subunit present in the Savage River (Upper Potomac). We did not observe evidence for widespread hatchery introgression with native Brook Trout. However, genetic effects due to fragmentation were evident in several Maryland Brook Trout populations, resulting in erosion of diversity that may have negative implications for their future persistence. Our current study supplements an increasing body of evidence that Brook Trout populations in Maryland are highly susceptible to multiple anthropogenic stresses, and many populations may be extirpated in the near future. Future management efforts focused on habitat protection and potential stream restoration, coupled with a comprehensive assessment framework that includes genetic considerations may provide the best outlook for Brook Trout populations in Maryland.
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Throughout their range, Brook Trout (Salvelinus fontinalis) occupy thousands of disjunct drainages with varying levels of disturbance, which presents substantial challenges for conservation. Within the southern Appalachian Mountains, fragmentation and genetic drift have been identified as key threats to the genetic diversity of the Brook Trout populations. In addition, extensive historic stocking of domestic lineages of Brook Trout to augment fisheries may have eroded endemic diversity and impacted locally adapted populations. We used 12 microsatellite loci to describe patterns of genetic diversity within 108 populations of wild Brook Trout from Tennessee and used linear models to explore the impacts of land use, drainage area, and hatchery stockings on metrics of genetic diversity, effective population size, and hatchery introgression. We found levels of within-population diversity varied widely, although many populations showed very limited diversity. The extent of hatchery introgression also varied across the landscape, with some populations showing high affinity to hatchery lineages and others appearing to retain their endemic character. However, we found relatively weak relationships between genetic metrics and landscape characteristics, suggesting that contemporary landscape variables are not strongly related to observed patterns of genetic diversity. We consider this result to reflect both the complex history of these populations and the challenges associated with accurately defining drainages for each population. Our study highlights the importance of genetic data to guide management decisions, as complex processes interact to shape the genetic structure of populations and make it difficult to infer the status of unsampled populations.
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A new species of the cichlid fish genus Pseudotropheus from Lake Malawi, Africa, is described. The new species superficially resembles Pseudotropheus lanisticola and P. livingstonii, but is clearly distinguished by head shape. The behavior pattern of cleaning ectoparasites from other cichlids is unique among all known species of Pseudotropheus.
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A comprehensive, but simple-to-use software package for executing a range of standard numerical analysis and operations used in quantitative paleontology has been developed. The program, called PAST (PAleontological STatistics), runs on standard Windows computers and is available free of charge. PAST integrates spreadsheettype data entry with univariate and multivariate statistics, curve fitting, time-series analysis, data plotting, and simple phylogenetic analysis. Many of the functions are specific to paleontology and ecology, and these functions are not found in standard, more extensive, statistical packages. PAST also includes fourteen case studies (data files and exercises) illustrating use of the program for paleontological problems, making it a complete educational package for courses in quantitative methods.
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Previous research has indicated that native southern Appalachian brook trout Salvelinus fotinalis are genetically distinct from hatchery stocks derived from northeastern populations. Six diagnostic allozyme loci identified in earlier research were used to assess the genetic origin of 38 Tennessee brook trout populations outside of Great Smoky Mountains National Park. Twenty-two of these populations (58%) were putatively native, eight (21%) were derived from hatchery stocks, and eight (21 %) were hybrids. Significant genetic differences among the 22 native populations were observed, and genetic structure among these populations was high (genetic variance index FST = 0.622). Thirty-two percent of the genetic variation among native populations was attributable to differences within watersheds, whereas 29% was attributable to variation among the five major watersheds containing brook trout. Populations located north (19) and south (3) of the French Broad River clustered separately, based on a genetic distance index. Knowledge of the genetic characteristics of brook trout populations will enable fisheries managers to make more informed decisions about this resource in Tennessee and elsewhere in the southern Appalachians. Given that maintaining the genetic integrity of native southern Appalachian brook trout is an important goal, our findings will help managers to design strategies that require stocking or stock transfers to create or expand populations.
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We document isolation and characterization of 13 tri- and tetranucleotide microsatellite DNA markers in brook trout (Salvelinus fontinalis). These markers displayed moderate to high levels of allelic diversity (averaging 20.5 alleles/locus) and heterozygosity (averaging 53.5%) in a range-wide survey of more than 13,000 fish. A comparison of two geographically proximal populations located on opposite sides of the eastern continental divide in Maryland, USA, found no deviations from Hardy–Weinberg equilibrium and minimal linkage disequilibrium. Microsatellite markers developed for S. fontinalis yielded sufficient genetic diversity to: (1) produce unique multilocus genotypes; (2) elucidate phylogeographic structure; and (3) provide unique demographic perspectives of population sizes and historical demographics. This suite of markers also provided considerable cross-species amplification utility among related salmonids.
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A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total branch length at each stage of clustering of OTUs starting with a starlike tree. The branch lengths as well as the topology of a parsimonious tree can quickly be obtained by using this method. Using computer simulation, we studied the efficiency of this method in obtaining the correct unrooted tree in comparison with that of five other tree-making methods: the unweighted pair group method of analysis, Farris's method, Sattath and Tversky's method, Li's method, and Tateno et al.'s modified Farris method. The new, neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods.
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We tested the hypotheses that brook trout Salvelinus fontinalis in the mid-Atlantic range are transitional in phylogenetic assemblage structure and that this structure provides evidence for historic, formative geomorphological events in this region. Mitochondrial DNA (mtDNA) restriction fragment length polymorphisms were examined in brook trout from Maryland. Population genetic structure and intraspecific divergence were determined and compared with the results of previous work throughout the mid-Atlantic range of brook trout. A total of 29 mtDNA haplotypes was analyzed, including 15 previously undetected in brook trout. Phylogenetic analysis revealed three major assemblages in Maryland, two east and one west of the Ohio River−Chesapeake Bay drainage divide. Analysis of molecular variance indicated that drainage basins within the two major drainages were the major units of population division. These results suggest that brook trout populations in the mid-Atlantic should be managed as major assemblage groups based on mtDNA descent.
Article
Mitochondrial DNA (mtDNA) restriction fragment length polymorphisms (RFLPs) of 2422 brook trout (Salvelinus fontinalis) from 60 units (major drainages, small stream catchments, and isolated lakes) representing 155 populations in eastern North America were examined to test hypotheses regarding postglacial dispersal and recolonization. An analysis of molecular variance (AMOVA) indicated that 38.8% of the variation was partitioned among the units, while approximately 60% was distributed among populations (phi(ST) = 59.3) compared with 40.7% within populations. This distribution of variation suggests a large degree of heterogeneity in population founding events and phylogeographic structuring in this species. Comparisons of mtDNA diversity between fish from putative refugial and recolonization zones for this species indicate that more than one refugial region contributed to northern recolonization. Haplotypic diversities in recolonized regions are greatest in south-central populations (i.e., southern Great Lakes region), while only one haplotype (haplotype 1) predominates in northern, western, and eastern postglacial zones. Large phylogenetic differences were found between northern and southern populations. Populations outside the zone of glaciation were the most genetically heterogeneous and were represented by fish from all six (A-F) of the major evolutionary clades identified. Only fish from the A, B, and C clades were found in glaciated regions, with C lineage fish restricted to south-central glaciation zones. Fish from the C clade are putatively the most ancestral lineage within the species based upon composite shared RFLPs with lake trout (Salvelinus namaycush) and Arctic char (Salvelinus alpinus).