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Sequencing of the rbcL Marker Reveals the Nonnative Red Alga Grateloupia taiwanensis (Halymeniaceae, Rhodophyta) in Alabama

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Mobile Bay, AL has been the site for the introduction of several terrestrial and freshwater invasive species, including red imported fire ants (Solenopsis invicta) and spike-topped apple snails (Pomacea bridgesii). The Gulf of Mexico has also been invaded by several marine animal species, such as zebra mussels (Dreissena polymorpha). To date, no invasive marine macroalga has been reported in the Mobile Bay area. However, recent collections of an unusual species of Grateloupia (Halymeniaceae, Rhodophyta) in Alabama indicate that an introduction has been made. On the basis of phylogenetic analysis of the large subunit of ribulose-1,5- bisphosphate carboxylase/oxygenase (rbcL) marker, the species has been identified as Grateloupia taiwanensis S.M. Lin & H.Y. Liang. This is the first report of G. taiwanensis outside its native range.
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Sequencing of the rbcL Marker Reveals the Nonnative Red Alga Grateloupia
taiwanensis (Halymeniaceae, Rhodophyta) in Alabama
MICHAEL S. DEPRIEST AND JUAN M. LO
´PEZ-BAUTISTA
Mobile Bay, AL has been the site for the introduction of several terrestrial and
freshwater invasive species, including red imported fire ants (Solenopsis invicta) and
spike-topped apple snails (Pomacea bridgesii). The Gulf of Mexico has also been
invaded by several marine animal species, such as zebra mussels (Dreissena
polymorpha). To date, no invasive marine macroalga has been reported in the Mobile
Bay area. However, recent collections of an unusual species of Grateloupia
(Halymeniaceae, Rhodophyta) in Alabama indicate that an introduction has been
made. On the basis of phylogenetic analysis of the large subunit of ribulose-1,5-
bisphosphate carboxylase/oxygenase (rbcL) marker, the species has been identified as
Grateloupia taiwanensis S.M. Lin & H.Y. Liang. This is the first report of G. taiwanensis
outside its native range.
G
rateloupia C. Agardh is a genus of benthic
marine red algae (Rhodophyta), currently
containing around 90 species (Guiry and Guiry,
2012). It is the largest genus in the family
Halymeniaceae. Species of this genus occur
throughout the world in warm temperate to
tropical marine waters. Several Grateloupia spe-
cies are known in the Gulf of Mexico, specifically
Grateloupia gibbesii Harvey and Grateloupia ptero-
cladina (M.J. Wynne) S. Kawaguchi & H.W.
Wang, as well as many reports of unidentified
Grateloupia species (see Fredericq et al., 2009).
Wynne (2011) listed a total of 11 species in the
western Atlantic, including G. gibbesii,G. pterocla-
dina, and Grateloupia filicina (J.V. Lamouroux) C.
Agardh. Wynne, however, remarked that past
identifications of G. filicina in the western
Atlantic, including the Gulf of Mexico, are
doubtful due to the results of De Clerck et al.
(2005b), which indicated that true G. filicina may
be restricted to the Mediterranean Sea and
Macaronesia. This suggests that tropical collec-
tions of G. filicina actually belong to a different
species.
The genus Grateloupia is known for having
simple morphologies that make distinguishing
species difficult, and DNA sequencing has been
instrumental in generic and species-level circum-
scriptions (e.g., Wang et al., 2001; De Clerck et
al., 2005b; Lin et al., 2008). Specimens previously
identified as G. filicina, frequently reported
throughout the world, actually show an unex-
pectedly high amount of genetic diversity and
are therefore morphologically static. As a result
of G. filicina being demonstrated to be polyphy-
letic, several new species have been split from the
group (e.g., Kawaguchi et al., 2001; De Clerck et
al., 2005b). Even in the past few years, the genus
has gained many new species, including Grate-
loupia huangiae S.-M. Lin & H.-Y. Liang, Grate-
loupia dalianensis H.W. Wang & D. Zhao, and
Grateloupia yinggehaiensis H.W. Wang & R.X.
Luan. The publications in which these species
are described (Lin and Liang, 2011; Zhao et al.,
2012) include molecular phylogenetic analyses
to more clearly delineate these taxa. Additional
taxonomic work is definitely necessary to contin-
ue to resolve systematic inconsistencies and to
account for unexpected, newly discovered diver-
sity in the genus Grateloupia.
In addition to these taxonomic concerns, it is
important to consider that Grateloupia contains
species that are known to be aggressively invasive,
most notably Grateloupia turuturu Yamada. Grate-
loupia turuturu, along with several other Grate-
loupia species, has been introduced in Italy
(Cecere et al., 2011), New Zealand (D’Archino
et al., 2007), Great Britain (Farnham and Irvine,
1973), France (Cabioch et al., 1997; Verlaque,
2001; Verlaque et al., 2005; Figueroa et al.,
2007), and the Atlantic coast of the United States
(Villalard-Bohnsack and Harlin, 1997; Gavio and
Fredericq, 2002; Marston and Villalard-Bohn-
sack, 2002). Due to the difficulty and cost of
stopping an invasive marine algal species—for
example, the 2000 accidental introduction of the
green alga Caulerpa taxifolia (M. Vahl) C. Agardh
in California (Anderson, 2005)—efforts to pre-
vent species introductions or to detect the
presence of a potential species are imperative
for conservation of native diversity. Recent
collections of Grateloupia made by the authors
on the Alabama coast have included specimens
that could not be morphologically identified
according to known taxa from the area. The
Gulf of Mexico Science, 2012(1–2), pp. 7–13
E2012 by the Marine Environmental Sciences Consortium of Alabama
current paper presents the identification of a
previously unknown nonnative species of Grate-
loupia from the Alabama Gulf Coast using large
subunit of ribulose-1,5-bisphosphate carboxyl-
ase/oxygenase (rbcL) sequence analysis, demon-
strates its position within Grateloupia using
phylogenetics, and suggests hypotheses regard-
ing the possible causes and circumstances of its
colonization.
MATERIALS AND METHODS
Twenty-one samples of Grateloupia of unknown
species and four samples of G. gibbesii were
collected from the locations listed in Table 1.
Individuals were found growing in the intertidal
or higher subtidal zone on rocks or cast ashore.
Upon collection, a small portion of thallus was
taken from each individual and desiccated in a
plastic bag with silica gel for later molecular
analysis. The remainder of each individual was
vouchered on a herbarium sheet; specimens
were deposited in The University of Alabama
Herbarium. DNA extraction of the desiccated
samples was performed using the DNEasy Plant
Mini Kit (Qiagen, Valencia, CA). The manufac-
turer’s recommendations were followed until the
final elutions, which were performed with
deionized water preheated to 65uC instead of
the elution buffer.
The rbcL marker, widely used for red algae in
both species identification (e.g., Saunders, 2009)
and phylogenetics (e.g., De Clerck et al., 2005a),
was amplified for all specimens. Polymerase
chain reaction (PCR) followed the methods of
Rindi et al. (2009). Primer sequences were
provided by G. W. Saunders (University of New
Brunswick, Fredericton, Canada, pers. comm.)
after standard primers failed to amplify. Proce-
dures for agarose gel electrophoresis, cleaning,
quantification of DNA, and capillary sequencing
were carried out according to Rindi et al. (2009).
Sequences were assembled using Geneious
Pro v5.1.7 (Drummond et al., 2010) and added
to a database of published rbcL sequences
from GenBank ,http://www.ncbi.nlm.nih.gov/
genbank/.for 18 Grateloupia samples selected
as an accurate representation of genetic diversity
in the genus (Table 1). The species Yonagunia
formosana (Okamura) Kawaguchi & Masuda was
selected as the outgroup after Lin and Liang
(2011). Sequences were aligned using MUSCLE
sequence alignment (Edgar, 2004) in Geneious.
After alignment, sequences were manually
checked for accuracy and truncated to uniform
length to avoid including ‘‘missing’’ data due to
incomplete and partial published sequences.
Other than trimming, no adjustments were made
to the alignment. Pair-wise distances between
sequences were calculated in Geneious when
applicable.
Parameters for maximum likelihood (ML) and
Bayesian inference (BI) were determined using
jModelTest 2.1 (Guindon and Gascuel, 2003;
Posada, 2008). ML analysis was executed in
GARLI v2.0 (Zwickl, 2006) with 500 bootstrap
replicates, starting from a random tree. Boot-
strap confidence values were obtained via Con-
sense (Felsenstein, 2005) on the CIPRES Science
Gateway (Miller et al., 2010). Values obtained
from Consense were converted to a percentage
value and rounded down. BI was executed in
MrBayes v3.1.2 (Huelsenbeck and Ronquist,
2001; Ronquist and Huelsenbeck, 2003).
The final tree was obtained in the NEXUS file
format, rooted with Y. formosana, and processed
in FigTree v1.3.1 ,http://tree.bio.ed.ac.uk/
software/figtree/.and Adobe Illustrator CS3
(Adobe Systems Incorporated, San Jose, CA) for
publication.
RESULTS
After alignment, the rbcL data set consisted of
20 taxa with 1,195 base pairs each. All 21
sequences of Grateloupia from Alabama were
identical, and all four sequences of G. gibbesii
were identical; therefore, only one sequence was
included in the alignment for each taxon. The
alignment contained no gaps, reflecting an
accurate alignment and the absence of insertions
and deletions in rbcL of red algae. The TrN +G
model was selected by ModelTest. Nucleotide
frequencies, substitution rates, and gamma
shape parameter were estimated by GARLI.
The resulting phylogram, with bootstrap confi-
dence values, is given in Figure 1. The alignment
and tree produced in this analysis are available in
TreeBASE: ,http://purl.org/phylo/treebase/
phylows/study/TB2:S13391..
DISCUSSION
The current study presents samples from an
unidentified Grateloupia population in Alabama.
The rbcL sequences for the Alabama Grateloupia
samples are identical to each other and nearly
identical (,0.1% divergent) to G. taiwanensis S.-
M. Lin & H.Y. Liang in Lin et al. (2008). Near-
complete similarity indicates that these speci-
mens are conspecific. The unidentified Grate-
loupia in Alabama is therefore determined to be
G. taiwanensis. This assertion is supported by the
sequence divergences among G. taiwanensis and
some of its most closely related taxa (.3.1%
divergent from G. huangiae and relatives) in this
8 GULF OF MEXICO SCIENCE, 2012, VOL. 30(1–2)
TABLE 1. List of species used in this study, with collection information and references.
Species Locality Collection data GenBank accession Reference
Grateloupia americana S. Kawaguchi
& H.W. Wang
Whale Park, near Sitka
(Baranof Island), AK
S. Lindstrom, 21 April 2000 AF488814 Gavio and Fredericq (2002)
Grateloupia belangeri (Bory) De Clerck,
Gavio, Fredericq, Cocquyt & Coppejans
Yzerfontein, Western Cape Province,
South Africa
O. De Clerck, 24 Nov. 1999 AY772035 De Clerck et al. (2005a)
Grateloupia capensis O. De Clerck Kommetjie, Cape Peninsula, South Africa O. De Clerck, 1 June 2003 AJ868466 De Clerck et al. (2005b)
Grateloupia doryphora (Montagne)
M.A. Howe
Playa de San Francisco, Bahı´a de Anco´n,
Anco´ n, Lima, Peru
P. Carba´jal, 15 Sep. 2001 AF488817 Gavio and Fredericq (2002)
Grateloupia elliptica Holmes Oryu
¯zako, Miyazaki Prefecture, Japan
(cultured material)
21 Dec. 1997 AB038605 Wang et al. (2000)
Grateloupia filicina (Lamouroux)
C. Agardh
Cala Aiguafreda, Begur, Province of
Girona, Spain
L. Lavelli, 1 May 2002 AJ868474 De Clerck et al. (2005b)
Grateloupia gibbesii Harvey Charleston Harbor, Charleston, SC M.S. DePriest, 22 June 2012 JX645160 This study
Grateloupia huangiae S.-M. Lin
& H.-Y. Liang
Makang, Taipei County, N.E. Taiwan S.-M. Lin, 30 April 2002 HM590410 Lin & Liang (2011)
Grateloupia longifolia Kylin Yzerfontein, Western Cape Province,
South Africa
O. De Clerck, 2 June 2003 AY772023 De Clerck et al. (2005a)
Grateloupia minima P.L. Crouan
& H.M. Crouan
Yzerfontein, Western Cape Province,
South Africa
O. De Clerck, 2 June 2003 AJ868487 De Clerck et al. (2005b)
Grateloupia phuquocensis Tanaka
& Pham-Hoa`ng Hoˆ
Kaalawai, Oahu, HI O. De Clerck, 26 April 2003 AY772022 De Clerck et al. (2005a)
Grateloupia somalensis Hauck Plage de Monseigneur, Fort Dauphin,
Madagascar
E. Coppejans, 31 Aug. 2002 AY772021 De Clerck et al. (2005a)
Grateloupia sparsa (Okamura) Chiang O
hara, Chiba Prefecture, Japan 9 April 2000 AB055473 Kawaguchi et al. (2001)
Grateloupia subpectinata Holmes Irago-misaki, Atsumi Peninsula, Aichi
Prefecture, Japan
3 July 2000 AB114213 Faye et al. (2004)
Grateloupia taiwanensis S.-M.
Lin & H.-Y. Liang
Sail Rock, Kenting National Park,
S. Taiwan
S.-M. Lin, 2 Oct. 2002 EU292742 Lin et al. (2008)
Grateloupia turuturu Yamada Onahama, Iwaki, Fukushima Prefecture,
Japan
16 Sep. 1999 AB055475 Kawaguchi et al. (2001)
Grateloupia turuturu The Kench, Hayling Island, Langstone
Harbour, Hampshire, UK
R.L. Fletcher, 28 March 2002 AY100002 Gavio and Fredericq (2002)
Grateloupia turuturu Lagoon of Venice, Venice, Italy A. Sfriso FN821950 Cecere et al. (2011)
Grateloupia sp. Fort Morgan, AL J.M. Lo´ pez-Bautista, 5 May 2004 JX645159 This study
DEPRIEST AND LO
´PEZ-BAUTISTA—GRATELOUPIA TAIWANENSIS IN ALABAMA 9
analysis and previously published phylogenies.
Grateloupia taiwanensis has not been previously
reported from the Gulf of Mexico (Fredericq et
al., 2009) or the western Atlantic (Wynne, 2011).
Before the current study, the distribution of G.
taiwanensis was known to include only Taiwan
(Lin et al., 2008). Therefore, we consider G.
taiwanensis to be a nonnative species in the Gulf
of Mexico. We also consider the introduction of
G. taiwanensis to be recent; this is supported by
the lack of previous reports of Grateloupia
specimens from the Gulf of Mexico with the
morphological features typical of G. taiwanensis
(large size and proliferous blades, see Figure 2,
which make it very conspicuous in intertidal
habitats) and the previous experience of the
authors collecting in the Gulf of Mexico.
On the basis of its rbcL sequence, G. gibbesii
does not appear to be conspecific with any
species in this analysis or with any species with a
published rbcL sequence in GenBank. The
samples collected of this species are very close
(,5 km) to the type locality of this alga,
Sullivan’s Island, SC (Harvey, 1853). Therefore,
we conclude that our identification of this alga is
correct and that G. gibbesii represents a unique
evolutionary lineage. Before the current study’s
publication, the authors became aware of the
possibility that the unknown Grateloupia found in
Alabama might not be G. taiwanensis but G.
gibbesii because this species had already been
known in the Gulf of Mexico and sequence data
had not been generated for it. However, because
these two species show a sequence divergence of
6.8% in rbcL, this is not the case. Future
collections and sequencing of G. gibbesii from
the Gulf of Mexico are needed to confirm its
presence.
The phylogeny reconstructed in the current
study shows that G. taiwanensis is closely related
to other taxa known primarily from the Pacific
Ocean. Of the species included in the analysis, G.
huangiae was described most recently (Lin and
Liang, 2011) and is found in Taiwan. Grateloupia
sparsa is widely distributed in the Asian Pacific,
along with G. turuturu. However, G. turuturu is
found throughout the world as an invasive
species. None of these species has been found
Fig. 1. Maximum likelihood (ML) phylogram of the rbcL marker of selected species of Grateloupia, using the TrN
+G model. Numbers above branches indicate ML bootstrap confidence values (500 replicates). Numbers below
branches indicate Bayesian posterior probabilities. ‘‘X’’ indicates support ,50%. Scale bar 5substitutions per site.
10 GULF OF MEXICO SCIENCE, 2012, VOL. 30(1–2)
Fig. 2. Herbarium sample of Grateloupia taiwanensis from Alabama.
DEPRIEST AND LO
´PEZ-BAUTISTA—GRATELOUPIA TAIWANENSIS IN ALABAMA 11
in the Gulf of Mexico, and of these, only G.
turuturu is known outside the Pacific Ocean. On
the basis of these distributions, it appears likely
that the most recent common ancestor of this
group occurred in Asia and that G. taiwanensis
was introduced to Alabama from Taiwan, rather
than vice versa. This is concordant with the
pattern of introductions of species of Grateloupia
from Asia, most notably G. turuturu but also
including several other species (Verlaque et al.,
2005).
Apart from the current study, which reports G.
taiwanensis for the first time from Alabama, the
extent of the occurrence of G. taiwanensis in the
Gulf of Mexico is currently unknown. Additional
collections are being made to Grateloupia taiwa-
nensis to determine their current expansion and
any possible detrimental effects this introduction
might have on marine communities.
ACKNOWLEDGMENTS
This study was funded by the U.S. National
Science Foundation (NSF) Assembling the Tree
of Life Program (DEB 0937978 to JLB) and the
NSF Research Experiences for Undergraduates
(DEB 1027012 to JLB). The authors express
sincere thanks to Dr. Showe-Mei Lin (National
Taiwan Ocean University, Keelung, Taiwan) for
providing samples and sequences of Grateloupia
taiwanensis; to Dr. Michael J. Wynne (University
of Michigan Herbarium, Ann Arbor, MI) for his
insightful comments on this manuscript; and to
Dr. D. Reid Wiseman (College of Charleston,
Charleston, SC) for providing samples of Grate-
loupia gibbesii and for collection assistance in
Charleston.
LITERATURE CITED
ANDERSON, L. W. J. 2005. California’s reaction to
Caulerpa taxifolia: a model for invasive species rapid
response. Biol. Invasions 7:1003–1016.
CABIOCH, J., A. CASTRIC-FEY, M.-T. L’HARDY-HALOS,AND A.
RIO. 1997. Grateloupia doryphora et Grateloupia filicina
var. luxurians (Rhodophyta, Halymeniaceae) sur les
coˆtes de Bretagne (France). Cryptogamie Algol.
18:117–137.
CECERE, E., I. MORO,M.A.WOLF,A.PETROCELLI,M.
VERLAQUE,AND A. SFRISO. 2011. The introduced
seaweed Grateloupia turuturu (Rhodophyta, Halyme-
niales) in two Mediterranean transitional water
systems. Bot. Mar. 54:23–33.
D’ARCHINO, R., W. A. NELSON,AND G. C. ZUCCARELLO.
2007. Invasive marine red alga introduced to New
Zealand waters: first record of Grateloupia turuturu
(Halymeniaceae, Rhodophyta). N. Z. J. Mar. Freshw.
Res. 41:35–42.
DECLERCK, O., B. GAVIO,S.FREDERICQ,I.BA
´RBARA,AND E.
COPPEJANS. 2005b. Systematics of Grateloupia filicina
(Halymeniaceae, Rhodophyta) based on rbcL se-
quence analyses and morphological evidence, in-
cluding the reinstatement of G. minima and the
description of G. capensis sp. nov. J. Phycol.
41:391–410.
———, ———, ———, E. COCQUYT,AND E. COPPEJANS.
2005a. Systematic reassessment of the red algal genus
Phyllymenia (Halymeniaceae, Rhodophyta). Eur. J.
Phycol. 40:169–178.
DRUMMOND, A. J., B. ASHTON,S.BUXTON,M.CHEUNG,A.
COOPER,C.DURAN,M.FIELD,J.HELED,M.KEARSE,S.
MARKOWITZ,R.MOIR,S.STONES-HAVAS,S.STURROCK,T.
THIERER,AND A. WILSON. 2010. Geneious v5.0,
available from http://www.geneious.com, accessed
12 September 2012.
EDGAR, R. C. 2004. MUSCLE: multiple sequence
alignment with high accuracy and high throughput.
Nucl. Acids Res. 32:1792–1797.
FARNHAM, W. F., AND L. M. IRVINE. 1973. The addition of
a foliose species of Grateloupia in the British marine
flora. Br. Phycol. J. 14:208–209.
FAYE, E. J., H. W. WANG,S.KAWAGUCHI ,S.SHIMADA,AND M.
MASUDA. 2004. Reinstatement of Grateloupia subpecti-
nata (Rhodophyta, Halymeniaceae) based on mor-
phology and rbcL sequences. Phycol. Res. 52:59–67.
FELSENSTEIN, J. 2005. PHYLIP (phylogeny inference
package). Department of Genome Sciences, Univer-
sity of Washington, Seattle, WA.
FIGUEROA, F. L., N. KORBEE,O.DECLERCK,I.BA
´RBARA,AND
E. A. R. GALL. 2007. Characterization of Grateloupia
lanceola (Halymeniaceae, Rhodophyta), an obscure
foliose Grateloupia from the Iberian Peninsula, based
on morphology, comparative sequence analysis and
mycosporine-like amino acid composition. Eur. J.
Phycol. 42:231–242.
FREDERICQ, S., T. O. CHO,S.A.EARLE,C.F.GURGEL,D.M.
KRAYESKY,L.E.MATEO-CID,A.M.MENDOZA-GONZA
´LES,J.
N. NORRIS,AND A. M. SUA
´REZ. 2009. Seaweeds of the
Gulf of Mexico, p. 187–259. In: Gulf of Mexico: its
origins, waters and biota. I. Biodiversity, D. L. Felder,
and D. K. Camp (eds.). Texas A&M University Press,
College Station, TX.
GAVIO, B., AND S. FREDERICQ S. 2002. Grateloupia turuturu
(Halymeniaceae, Rhodophyta) is the correct name
of the non-native species in the Atlantic known as
Grateloupia doryphora. Eur. J. Phycol. 37:349–359.
GUINDON, S., AND O. GASCUEL. 2003. A simple, fast, and
accurate algorithm to estimate large phylogenies by
maximum likelihood. Syst. Biol. 52:696–704.
GUIRY, M. D., AND G. M. GUIRY. 2012. AlgaeBase. World-
wide electronic publication, National University of
Ireland, Galway. http://www.algaebase.org; searched
on 6 September 2012.
HARVEY, W. H. 1853. Nereis Boreali-Americana: or,
Contributions to a History of the Marine Algae of
North America. Part II, Rhodospermeae. V. Crypto-
nemiaceae, XXII. Grateloupia. Smithsonian Contri-
butions to Knowledge 5(5). Reprint in Bibliotheca
Phycologica Band 20, p. 199–200. J. Cramer Publish-
ing, Lubrecht & Cramer LTD, Port Jervis, NY.
HUELSENBECK, J. P., AND F. RONQUIST. 2001. MRBAYES:
Bayesian inference of phylogeny. Bioinformatics
17:754–755.
12 GULF OF MEXICO SCIENCE, 2012, VOL. 30(1–2)
KAWAGUCHI, S., H. W. WANG,T.HORIGUCHI,G.SARTONI,
AND M. MASUDA. 2001. A comparative study of the red
alga Grateloupia filicina (Halymeniaceae) from the
northwestern Pacific and Mediterranean with the
description of Grateloupia asiatica sp. nov. J. Phycol.
37:433–442.
LIN, S.-M., AND H.-Y. LIANG. 2011. Grateloupia huangiae
(Halymeniaceae, Rhodophyta), a new species from
Taiwan previously confused with Polyopes lancifolius,
with emphasis on the development of the auxiliary-
cell ampullae. Phycologia 50:232–240.
———, ———, AND M. H. HOMMERSAND. 2008. Two
types of auxiliary cell ampullae in Grateloupia
(Halymeniaceae, Rhodophyta), including G. taiwa-
nensis sp. nov. and G. orientalis sp. nov. from Taiwan
based on rbcL gene sequence analysis and cystocarp
development. J. Phycol. 44:196–214.
MARSTON, M., AND M. VILLALARD-BOHNSACK. 2002. Genetic
variability and potential sources of Grateloupia
doryphora (Halymeniaceae, Rhodophyta), an invasive
species in Rhode Island waters (USA). J. Phycol.
38:649–658.
MILLER, M. A., W. PFEIFFER,AND T. SCHWARTZ. 2010.
Creating the CIPRES Science Gateway for inference
of large phylogenetic trees, p. 1–8. In: Proceedings of
the Gateway Computing Environments Workshop
(GCE), 14 Nov. 2010, New Orleans, LA.
POSADA, D. 2008. jModelTest: phylogenetic model
averaging. Mol. Biol. Evol. 25:1253–1256.
RINDI, F., D. W. LAM,AND J. M. LO
´PEZ-BAUTISTA. 2009.
Phylogenetic relationships and species circumscrip-
tion in Trentepohlia and Printzina (Trentepohliales,
Chlorophyta). Mol. Phylogen. Evol. 52:329–339.
RONQUIST, F., AND J. P. HUELSENBECK. 2003. MRBAYES 3:
Bayesian phylogenetic inference under mixed mod-
els. Bioinformatics 19:1572–1574.
SAUNDERS, G. W. 2009. Routine barcoding of Canadian
Gracilariales (Rhodophyta) reveals the invasive spe-
cies Gracilaria vermiculophylla in British Columbia.
Mol. Ecol. Resourc. 9(s1):140–150.
VERLAQUE, M. 2001. Checklist of the macroalgae of
Thau Lagoon (He´ rault, France), a hot spot of
marine species introduction in Europe. Oceanol.
Acta 24:29–49.
———, P. M. BRANNOCK,T.KOMATSU,M.VILLALARD-
BOHNSACK,AND M. MARSTON. 2005. The genus Grate-
loupia C. Agardh (Halymeniaceae, Rhodophyta) in
the Thau Lagoon (France, Mediterranean): a case
study of marine plurispecific introductions. Phycolo-
gia 44:477–496.
VILLALARD-BOHNSACK, M., AND M. M. HARLIN. 1997. The
appearance of Grateloupia doryphora (Halymeniaceae,
Rhodophyta) on the northeast coast of North
America. Phycologia 36:324–328.
WANG, H. W., S. KAWAGUCHI,T.HORIGUCHI,AND M.
MASUDA. 2000. Reinstatement of Grateloupia catenata
(Rhodophyta, Halymeniaceae) on the basis of
morphology and rbcL sequences. Phycologia
39:228–237.
———, ——— , ———, AND ———. 2001. A morpho-
logical and molecular assessment of the genus Prionitis
J. Agardh (Halymeniaceae, Rhodophyta). Phycol. Res.
49:251–261.
WYNNE, M. 2011. A checklist of benthic marine algae of
the tropical and subtropical western Atlantic: third
revision. Nova Hewigia Beih. 140:166.
ZHAO, D., H. WANG,Y.SHENG,J.LU
¨,AND R. LUAN. 2012.
Morphological observation and rbcL gene sequences
studies of two new species, Grateloupia dalianensis
H.W. Wang et D. Zhao, sp. nov. and G. yinggehaiensis
H.W. Wang et R.X. Luan, sp. nov. (Halymeniaceae,
Rhodophyta) from China. Acta Oceanol. Sin.
31:109–120.
ZWICKL, D. J. 2006. Genetic algorithm approaches for
the phylogenetic analysis of large biological se-
quence data sets under the maximum likelihood
criterion. Ph.D. diss., The University of Texas at
Austin.
THE UNIVERSITY OF ALABAMA,TUSCALOOSA,ALABAMA
35487. Date accepted: October 16, 2012
DEPRIEST AND LO
´PEZ-BAUTISTA—GRATELOUPIA TAIWANENSIS IN ALABAMA 13
... Some species of Grateloupia are known invasive species. Grateloupia taiwanensis S.-M.Lin & H.-Y. Liang was first described in 2008 by Lin et al. [8] but it has since been recorded in the Gulf of Mexico [9].The genus is currently being split into several genera based on combined molecular and morphological analysis [10], and it is possible that G. taiwanensis will be placed into a new genus. ...
... An individual of Grateloupia taiwanensis from Orange Beach, AL, USA, which was collected in a previous study [9] was selected for genome sequencing. DNA was extracted from the field-collected sample using the QIAGEN DNEasy Plant Mini Kit (QIAGEN, Valencia, CA, USA) following the manufacturer's instructions. ...
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The complete plastid genome sequence of the red macroalga Grateloupia taiwanensis S.-M.Lin & H.-Y.Liang (Halymeniaceae, Rhodophyta) is presented here. Comprising 191,270 bp, the circular DNA contains 233 protein-coding genes and 29 tRNA sequences. In addition, several genes previously unknown to red algal plastids are present in the genome of G. taiwanensis. The plastid genomes from G. taiwanensis and another florideophyte, Gracilaria tenuistipitata var. liui, are very similar in sequence and share significant synteny. In contrast, less synteny is shared between G. taiwanensis and the plastid genome representatives of Bangiophyceae and Cyanidiophyceae. Nevertheless, the gene content of all six red algal plastid genomes here studied is highly conserved, and a large core repertoire of plastid genes can be discerned in Rhodophyta.
... This includes several resurrected taxa and some new genera, which the authors intend to describe in a forthcoming paper. Grateloupia taiwanensis was not included in their analysis, but considering previous phylogenetic analyses (Lin et al., 2008;DePriest and López-Bautista, 2012), G. taiwanensis appears to belong to a clade that Gargiulo et al. (2013) suggest should become a new genus based on Grateloupia subpectinata Holmes. Grateloupia angusta does not belong to this clade, instead belonging to a clade corresponding to the genus Pachymeniopsis Y. Yamada ex S. Kawabata (Gargiulo et al., 2013). ...
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Although red algae are economically highly valuable for their gelatinous cell wall compounds as well as being integral parts of marine benthic habitats, very little genome data are currently available. We present mitochondrial genome sequence data from the red alga Grateloupia taiwanensis S.-M. Lin & H.-Y. Liang. Comprising 28,906 nucleotide positions, the mitochondrial genome contig contains 25 protein-coding genes and 24 transfer RNA genes. It is highly similar to other red algal genomes in gene content as well as overall structure. An intron in the cox1 gene was found to be shared by G. taiwanensis and Grateloupia angusta (Okamura) S. Kawaguchi & H. W. Wang. We also used whole-genome alignments to compare G. taiwanensis to different groups of red algae, and these results are consistent with the currently accepted phylogeny of Rhodophyta. © 2014 Marine Biological Laboratory.
... Interestingly, six species currently recognized as belonging to the genera Grateloupia and Pachymeniopsis have been introduced from Asia to Australasia, Europe and North America: G. asiatica S. Kawaguchi & H. W. Wang, G. imbricata Holmes, G. patens (Okamura) S. Kawaguchi & H. W. Wang, G. subpectinata Holmes, G. taiwanensis S. M. Lin & H. Y. Liang, G. turuturu Yamada and P. lanceolata (K. Okamura) Y. Yamada ex S. Kawabata (as G. lanceolata [Okamura] S. Kawaguchi; (Verlaque 2001, Gavio and Fredericq 2002, Marston and Villalard-Bohnsack 2002, Verlaque et al. 2005, Saunders and Withall 2006, D'Archino et al. 2007, Garc ıa-Jim enez et al. 2008, Cerere et al. 2011, De Priest and L opez-Bautista 2012, Nelson et al. 2013. The exponential increase in global shipping and export of aquaculture products has provided numerous opportunities for dispersing species from ocean to ocean (Carlton and Geller 1993, Miller et al. 2011), but little is known about the population structure of these species within their native ranges. ...
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The red alga Pachymeniopsis lanceolata, formerly known as Grateloupia lanceolata, is a component of the native algal flora of northeast Asia and has been introduced to European and North American waters. It has been confused with a cryptic species collected from Korea and Italy. Our analyses of rbcL, cox3 and ITS from P. lanceolata and this cryptic species has revealed two distinct entities, forming a clade, which were clearly separated from its congeners and positioned with other Asian species. Here we describe the cryptic species as P. gargiuli sp. nov., a species that differs from others by molecular sequence and subtle anatomical characters. We hypothesize that P. gargiuli may have been recently dispersed by anthropogenic vectors, possibly at or near the same time as was P. lanceolata. Our cox3 dataset revealed that one haplotype of P. gargiuli, shared between Korea and Italy, and two haplotypes of P. lanceolata, commonly occurring in Korea and USA, are invasive haplotypes. This is the first report of the utility of the mitochondrial coding cox3 sequences in red algae.This article is protected by copyright. All rights reserved.
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A new species of Grateloupia from Wenzhou Nanji Island in Zhejiang province, China, was illustrated based on morphological observation, early development, life history and rbcL gene sequence analysis, and named Grateloupia oligoclora H.W.Wang & Y.Bian sp. nov. The morphological features of this new species can be summarized as upright thalli, solitary or cespitose, dark red in colour, cartilaginous and mucilaginous in texture. The margins of the thalli were smooth, without lateral branches, proliferations, or branched, dichotomously branched or with 3–5 irregular rod-shaped branches. The thalli were consisted of cortex cells (6–9 cell layers) and medulla. The cystocarps were spherical and appeared to be speckled from the surface of the thalli. The carpogonial branch ampullae and auxiliary cell branch were typical Grateloupia-type. During the cruciate dividing of tetrasporangia, some dyads showed asynchronous phenomenon. Type of spore development and life history were typical mediate discal type and isomorphic alternation of generations. Phylogenetic analysis based on rbcL sequence indicated that the new taxon formed an independent clade from other Grateloupia species, and this clade was sister to G. subpectinata Holmes with high interspecific divergence 12 bp (1%), supporting its specific status. Accordingly, G. oligoclora H.W.Wang & Y.Bian sp. nov is proposed as a new species of Grateloupia. This study provides new resource and species diversity of marine Rhodophyta in China.
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In the present study, the newly recorded red alga Grateloupia gibbesii was collected from the Eastern Harbor, Alexandria, Egypt in order to determine the biochemical content, total nitrogen and phosphorus content during winter and spring 2012 in addition to summer 2016. The study moisture, ash content, aminoacids profile, macro-elements (calcium, sodium, potassium, magnesium), and trace elements (copper, zinc, iron, cobalt, manganese, selenium, cadmium, lead, nickel and mercury) were addressed during spring 2015 & summer 2016. The concentration of the total carbohydrates, protein, nitrogen, and phosphorus content in the alga was relatively high during summer 2016 (394.30, 268.20, 39.10 mg/g and1680 mg/100 g, respectively). However, the lipid content of Grateloupia gibbesii experienced low values during the study period. The fatty acids profile showed the highest concentration during winter 2012 (922.09 μg/g). The moisture and ash content of Grateloupia gibbesii recorded the highest percentages (24.01 and 27.72%) during spring 2015, respectively. The total amino acids (EAA) attained a maximum of 732.20 mg/g during spring 2015. The macro-elements and trace elements mostly showed higher content during spring 2015 compared to summer 2016. The results of ANOVA test revealed that the seasonal variation in all the biochemical contents recorded a highly significant difference (P˂ 0.0001). The moisture and ash content showed a significant difference (P˂ 0.0001) during spring 2015 & summer 2016. For the macro-elements, the values of potassium and magnesium were significantly different during spring 2015 & summer 2016, while sodium and calcium were not significantly different during the two seasons. All the trace metals were not affected by seasonal variation, except for nickel, iron, selenium and mercury (P˂ 0.0001).
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The taxonomy of the genera Grateloupia, Phyllymenia and Prionitis has been revised several times but remains controversial. The female reproductive structure in combination with phylogenetic reconstructions are mostly used to define the genera. However, the architecture and behavior of the auxiliary cell ampullae before and after diploidization are not well documented for most species. To fill this knowledge gap of Grateloupia sensu lato, we examined the female reproductive structures of a new species (Prionitis taiwani-borealis sp. nov.) from Taiwan and compared our observations to the species currently placed in the Phyllymenia/Prionitis complex. The female reproductive structures of the Phyllymenia/Prionitis complex are characterized by: 1) 2-celled carpogonial branches with the supporting cell being the basal cell of a third-order ampullar filament; 2) auxiliary cell ampullae composed of three orders of unbranched ampullar filaments before diploidization; 3) cells of auxiliary cell ampullar filaments forming a cellular cluster after diploidization and surrounding the developing gonimoblasts; 4) gonimoblast initials produced from the diploidized auxiliary cells before fusing with them; 5) branched auxiliary cell ampullar and secondary medullary filaments involved in early pericarp formation. A monophyletic relationship of species possessing female structures similar to those of Pr. taiwani-borealis and related species was highly supported based on combined rbcL and LSU rDNA sequence analyses. The female reproductive structures of other species of Grateloupia sensu lato phylogenetically closely related to the Prionitis and Phyllymenia assemblage, require reinvestigation as correct interpretations of pre- and post-fertilization events have proven to be informative for resolving the systematics of the Halymeniaceae.
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Data on the chemical composition of 40 edible red algal species was compared to Grateloupia gibbesii, a recently reported non-indigenous red alga in the Mediterranean Sea. There has been no information on the seasonality or the chemical composition of G. gibbesii from its areas of distribution. The species was reported in a single location in the Mediterranean Sea, a eutrophic embayment in Egypt. Grateloupia gibbesii existed in spring from late March to early June. The short life span of G. gibbesii affected its biochemical constituents. Crude lipids and total carbohydrate contents represented 12 % and 70% of its dry mass; resp. Five grams of dry G. gibbesii could provide 8.6% and 91% of the recommended dietary intake of lipids and carbohydrates. In contrast, protein and ash contents were low in comparison to other red seaweeds. The analysis of mineral content showed that Ca, Fe and Zn concentrations were high, while Cd and total As, might be at a toxic level. In Egypt, exploitation of seaweeds is still emerging; accordingly, more studies are needed to assess the application of seaweeds as a healthy and renewable alternative in the nutraceutical, cosmetics, and wellbeing industries.
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Background The introduction of exotic species can have serious consequences for marine ecosystems. On the shores of the Cantabrian Sea (North of Spain) there are no routine examinations of seaweeds that combine molecular and morphological methods for early detection of exotic species making it difficult to assess in the early stages their establishment and expansion processes as a result of anthropogenic activities (e.g., shipping and/or aquaculture). Methods In this work we used both morphological identification and molecular barcoding (COI-5P and rbcL genes) of red algae collected in Asturias, Bay of Biscay (Gij?n and Cand?s harbours) and from the University of Oviedo?s herbarium samples. Results The results confirmed the presence of exotic Asian seaweeds Pachymeniopsis gargiuli and Grateloupia turuturu Yamada on Cantabrian Sea shores. Several individuals of these species were fertile and developing cystocarps when collected, underlining the risk of possible expansion or continued establishment. This study constitutes the first report of the Asian P. gargiuli in this area of the Bay of Biscay. Conclusions Here the presence of the exotic species of the Halymeniales P.?gargiuli is confirmed. We hypothesize that this species may have been established some time ago as a cryptic introduction with G. turuturu in Galician shores. The detection of these species on the shores of the Cantabrian Sea is relevant since introductions of Pachymeniopsis species could have been overlooked on other European coasts, probably mixed with G. turuturu and P. lanceolata. Our results confirm one new alien seaweed species that has been detected using molecular methods (COI-5P region and rbcL genes barcoding) on North Atlantic shores: the Asian native P. gargiuli. This demonstrates that routine screening for early detection of exotic algae in the Cantabrian Sea can be used for risk assessment. Genetic barcoding should be done using both rbcL gene and COI-5P regions since, although COI-databases are still poorer in sequences and this inhibits successful outcomes in Grateloupia-related species identifications, it is nonetheless a useful marker for species-level identifications in seaweeds.
Article
Grateloupia variata sp. nov. H. W. Wang (Halymeniaceae, Rhodophyta) is newly described from Qingdao, China. The results indicated that: (1) thalli are cartilaginous or gelatinous in texture; (2) thalli are constricted at the base with frequent proliferations; (3) the end portion of branches are irregular, wide, flat or ungulate, split; (4) the cortex is 50–80 μm thick, consisting of four to six layers of cells; the medulla is 10–15 μm long and 1–3 μm wide, consisting of densely and irregularly intertwined filaments; (5) six-celled carpogonial ampullae branched and five-celled auxiliary cell ampullae branched; they are of the typical Grateloupia-type; (6) tetraspores and carpospores grow directly into discoid crusts through initial cell division and are of the immediate discal type; (7) Grateloupia variata sp. nov. shows a typical triphasic life history with homotypic gametophytes, carposporophytes and tetrasporophytes, and a typical homotypic alternation of generations; and (8) the rbcL sequences show no pairwise divergence and the species form a small single monophyletic subclade within the Grateloupia clade. Morphological observations, life history and molecular analysis support G. variata as a new species.
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Grateloupia huangiae S.-M. Lin & H.-Y. Hang sp. nov. was previously recorded as G. okamurae Yamada [currently recognized as Polyopes lancifolius (Harvey) Kawaguchi & H.W. Wang] in Taiwan. Molecular phylogenetic analysis shows that G. huangiae is unrelated to P. lancifolius but is closely related to Grateloupia taiwanensis S.-M. Lin & H.-Y. Liang. Although G. huangiae superficially resembles P. lancifolius in having a leafy thallus and short proliferations borne on the thallus surface, the structure of the auxiliary-cell ampulla is very different. The auxiliary-cell ampulla of G. huangiae is composed of three orders of unbranched filaments before diploidization, each of which is 11-13 cells long. The auxiliary cell is the first cell of the third-order ampullar filament, which is cut off from the first cell of the second-order ampullar filament. This type of auxiliary-cell ampulla is the same as that found in G. taiwanensis. On the other hand, P. lancifolius has a more complex auxiliary-cell ampulla in which the ampullar filaments may bear up to five to six orders of branches before diploidization. A detailed study of the development of auxiliary-cell ampullae before and after diploidization is needed in other species and genera within the Halymeniaceae to better delineate generic concepts in the family.
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The red alga Grateloupia turuturu is recorded from New Zealand waters for the first time. This species, native to Japan, is considered to be invasive in western Europe, North America, and Tasmania. The occurrence of G. turuturu is confirmed by molecular analysis of chloroplast‐encoded rbcL and mitochondrial cox2–3 spacer sequences as well as the vegetative and reproductive anatomy of both tetrasporophyte and gametophyte specimens.
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Grateloupia doryphora and G. filicina C. Agardh var. luxurians are two exotic species now well established on the coasts of Brittany. The taxa are described, and the nature of their vector is discussed and compared with previous introductions. Their occurrence in the vicinity of shellfish farms suggests that they could have been transported by commercial molluscs. The importance of long-term surveys of coastal areas is here emphasized.
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A few species in the genus Grateloupia (Halymeniaceae, Rhodophyta) have been investigated in detail with respect to morphological observations and molecular analyses. In this study, the authors document the vegetative and reproductive structures of two new species of Grateloupia, G. dalianensis H.W.Wang et D.Zhao, sp.nov. and G. yinggehaiensis H.W.Wang et R.X.Luan, sp.nov. They both have the morphological character that carpogonial ampullae and auxiliary cell ampullae are the simple Grateloupia-type. The two species can be distinguished from other species of the genus by their distinctive morphological features respectively. Based on ribulose-1,5-bisphosphate carboxylase/oxygenase (rbcL) gene sequences, the phylogenetic tree obtained in the study indicated that they are both embedded within the Grateloupia clade. G. dalianensis clusters a subclade with G. asiatica, and G. yinggehaiensis forms a single monophyletic subclade with G. hawaiiana.
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Morphological observations and molecular analysis of a red alga, which has been known as Grateloupia filicina var. lomentaria, G. filicina var. porracea f. lomentaria, or Sinotubimorpha porracea (Cryptonemiales, Halymeniaceae) in the western Pacific, were made for field-collected and cultured plants. The auxiliary-cell ampullae lack tertiary filaments and are of the Grateloupia-type. Morphologically, this alga can be distinguished from G. filicina by (1) the hollow axis; (2) the numerous short proliferations with Lomentaria-like constrictions that densely cover the surface of erect axes in mature plants; and (3) a tendency for reproductive structures to be restricted to the proliferations. The presence of 4.2-4.6% (62-67 bp) nucleotide substitutions in the ribulose-l,5-bisphosphate carboxylase/oxygenase gene (rbcL) between G. filicina and the alga in question also strongly supports the differentiation of these two entities at the species level. The form of the proliferations distinguishes the alga in question from the West Indies G. porracea. Re-examination of type material of Grateloupia catenata Yendo, which has been placed into synonymy under Grateloupia filicina var. porracea f. lomentaria, revealed that our freshly collected specimens matched it, and therefore the Yendo name is reinstated. The topological position of Grateloupia catenata in rbcL trees does not support its separation from other Grateloupia species at the generic rank.
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Grateloupia doryphora (Montagne) Howe (Cryptonemiales, Halymeniaceae), a large, foliose, red alga, has been recorded for the first time on the northeastern coast of North America. This invasive species is common to the Pacific Ocean, Mediterranean Sea, and Atlantic Ocean from the British Isles to Angola and from Florida to Uruguay. Since July 1996, specimens have also been observed in large numbers in the outermost portions of Narragansett Bay, Rhode Island, USA, Vegetative, carposporophytic, and tetrasporophytic specimens were collected from rock outcrops, loose stones, and mussel shells in the lower intertidal and upper subtidal zones. Vegetative morphology and anatomy exhibit the extensive variability described in foreign specimens belonging to the broad Grateloupia doryphora complex. Reproductive details, particularly the shape of the carpogonial and auxiliary cell ampullae, are typical of the genus. Dumping of ballast water is suspected as the vector responsible for this introduction.