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The Polycystic Ovary Syndrome Evolutionary Paradox: a Genome-Wide Association Studies–Based, in silico, Evolutionary Explanation

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Context: Polycystic ovary syndrome (PCOS) is a common female endocrine disorder characterized by phenotypes ranging from hyperandrogenism to metabolic disorders, more prevalent in people of African/Caucasian and Asian ancestry. Because PCOS impairs fertility without diminishing in prevalence, it was considered an evolutionary paradox. Genome-Wide Association Studies identified 17 single nucleotide polymorphisms (SNPs) associated with PCOS, with different allele frequencies, ethnicity-related, in 11 susceptibility loci. Objective: In this study we analyze the PCOS phenotype-genotype relationship in silico, using SNPs of representative genes for analysis of genetic clustering and distance, to evaluate the degree of genetic similarity. Data source: 1000 Genomes, HapMap, and Human Genome Diversity Project databases were used as source of allele frequencies of the SNPs, using data from male and female individuals grouped according to their geographical ancestry. Setting and design: Genetic clustering was calculated from SNPs data by Bayesian inference. The inferred ancestry of individuals was matched with PCOS phenotype data, extracted from a previous meta-analysis. The measure of genetic distance was plotted against the geographic distance between the populations. Results: The individuals were assigned to five genetic clusters, matching with different world regions (Kruskal-Wallis/Dunn's post test; P < .0001), and converging in two main PCOS phenotypes in different degrees of affinity. The overall genetic distance increased with the geographic distance among the populations (linear regression; R(2) = 0.21; P < .0001), in a phenotype-unrelated manner. Conclusions: Phenotype-genotype correlations were demonstrated, suggesting that PCOS genetic gradient results from genetic drift due to a serial founder effect occurred during ancient human migrations. The overall prevalence of the disease supports intralocus sexual conflict as alternative to the natural selection of phenotypic traits in females.
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The Polycystic Ovary Syndrome Evolutionary Paradox:
a Genome-Wide Association Studies–Based, in silico,
Evolutionary Explanation
Livio Casarini and Giulia Brigante
Unit of Endocrinology, Department of Biomedical, Metabolic, and Neural Sciences (L.C., G.B.), and
Center for Genomic Research (L.C.), University of Modena and Reggio Emilia, 41121 Modena, Italy
Context: Polycystic ovary syndrome (PCOS) is a common female endocrine disorder characterized
by phenotypes ranging from hyperandrogenism to metabolic disorders, more prevalent in people
of African/Caucasian and Asian ancestry. Because PCOS impairs fertility without diminishing in
prevalence, it was considered an evolutionary paradox. Genome-Wide Association Studies iden-
tified 17 single nucleotide polymorphisms (SNPs) associated with PCOS, with different allele fre-
quencies, ethnicity-related, in 11 susceptibility loci.
Objective: In this study we analyze the PCOS phenotype-genotype relationship in silico, using SNPs
of representative genes for analysis of genetic clustering and distance, to evaluate the degree of
genetic similarity.
Data Source: 1000 Genomes, HapMap, and Human Genome Diversity Project databases were used
as source of allele frequencies of the SNPs, using data from male and female individuals grouped
according to their geographical ancestry.
Setting and Design: Genetic clustering was calculated from SNPs data by Bayesian inference. The
inferred ancestry of individuals was matched with PCOS phenotype data, extracted from a previous
meta-analysis. The measure of genetic distance was plotted against the geographic distance be-
tween the populations.
Results: The individuals were assigned to five genetic clusters, matching with different world
regions (Kruskal-Wallis/Dunn’s post test; P.0001), and converging in two main PCOS phenotypes
in different degrees of affinity. The overall genetic distance increased with the geographic distance
among the populations (linear regression; R
2
0.21; P.0001), in a phenotype-unrelated manner.
Conclusions: Phenotype-genotype correlations were demonstrated, suggesting that PCOS genetic
gradient results from genetic drift due to a serial founder effect occurred during ancient human
migrations. The overall prevalence of the disease supports intralocus sexual conflict as alternative to the
natural selection of phenotypic traits in females. (J Clin Endocrinol Metab 99: E2412–E2420, 2014)
Polycystic ovary syndrome (PCOS) is the most common
endocrinopathy affecting 5–10% of women in re-
productive age worldwide. It is a familial, polygenic con-
dition associated with infertility, irregular menstrual
cycles, anovulation, hyperandrogenism, as well as nonre-
productive health problems depending on genetic back-
ground and affected by lifestyle (1–3).
PCOS phenotypic features
Even if the disease displays a wide variety of charac-
teristics, it is widely accepted that PCOS features decrease
within two main phenotypes. According to the 2003 Rot-
terdam criteria (4), the prevalent clinical symptoms define
the hyperandrogenic or metabolic phenotype (5–10). The
hyperandrogenic PCOS phenotype is defined mainly by
ISSN Print 0021-972X ISSN Online 1945-7197
Printed in U.S.A.
Copyright © 2014 by the Endocrine Society
Received June 19, 2014. Accepted July 29, 2014.
First Published Online August 5, 2014
Abbreviations: GWAS, Genome-Wide Association Studies; PCOS, polycystic ovary syn-
drome; SNP, single nucleotide polymorphis.
JCEM ONLINE
Advances in Genetics—Endocrine Research
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hirsutism, androgenic alopecia, and relatively high andro-
gen levels, whereas the metabolic phenotype is character-
ized by metabolic syndrome, insulin resistance, increased
risk for type 2 diabetes, and high body mass index or
central obesity (5–10). It can be approximately established
that the metabolic phenotype is prevalent in Central
Asians and Americans whereas the hyperandrogenic phe-
notype is prevalent in the other world regions. However,
the wide spectrum of secondary disorders results in an
overlap of PCOS characteristics among human popula-
tions, reflecting the polygenic condition of the disease and
genetic admixture. Curiously, no clear differences in the
prevalence of the disease among different ethnic groups
has been identified so far (10–15).
Evolutionary origin of PCOS
Given that the disease impairs fertility without dimin-
ishing its high global prevalence, it was extensively dis-
cussed as an evolutionary paradox. Previous studies at-
tempted to explain how a genetic pattern linked to
metabolic or reproductive disadvantages spread across
continents, generating a dozen theories suggesting differ-
ent explanations for the evolutionary origin of PCOS (16).
Most these hypotheses prompt a balancing mechanism
between viability selection and metabolic thrift against
fertility disadvantages associated with this condition. For
example, androgenisation and insulin resistance may con-
fer survival benefit to females and improve the glucose
availability for ovulatory functions in hunter-gatherer so-
cieties (17). Moreover, metabolic thrift and increased fat
storage are advantages for mother and fetus under low
food conditions (18). However, the effect on the individ-
ual fitness of the PCOS phenotype during the evolution of
humans is not understood, and no evolutionary advantage
for the PCOS genotype carriers has been proven. Surpris-
ingly, all previous theories about PCOS consider evolu-
tionary dynamics involving only females, not considering
the contribution of the male in the genotype-phenotype
inheritance and evolution. All the genetic and evolution-
ary analyses of PCOS were carried out on a sample of
female individuals, presumably resulting in biased evalu-
ations and in an overall loss of genetic information.
Genetic markers of the disease
Previous studies identified a hundred candidate genes
associated with PCOS and several genetic markers affect-
ing the pathogenesis, phenotype, and prevalence of the
disease have been proposed (19). Recently, two Genome-
Wide Association Studies (GWAS) performed in Han Chi-
nese women identified 11 new risk loci for PCOS (20, 21),
which count 17 single nucleotide polymorphisms (SNPs)
leading to genetic variants strongly associated with the
disease. The gene sequences located within the PCOS sus-
ceptibility loci are involved in the ovarian response to the
gonadotropic hormones, in the metabolism of glucose and
lipids, and in cell cycle regulation. This finding is corrob-
orated by other studies showing the association between
these markers and the disease (22–27). The results of these
two statistically powerful analyses were confirmed by
other works performed in populations of non-Chinese an-
cestry (19, 28, 29), showing a common genetic risk profile
across human populations.
All the genes falling within the susceptibility loci iden-
tified by GWAS may potentially be implicated in the mod-
ulation of the PCOS phenotype and its severity. These
genes are FSHR,LHCGR,DENND1A,THADA,
C9orf3,YAP1,HMGA2,RAB5B/SUOX,INSR,TOX3
and SUMO1P1; their potential relation with PCOS was
described separately (Supplemental Discussion).
Geography of PCOS genetic markers
The distribution of the allelic variants associated to
PCOS is different among the populations worldwide, as
observable by Human Genome Diversity Project (HGDP)
selection browser (http://hgdp.uchicago.edu/cgi-bin/gbrowse/
HGDP) (30–32), a web-based software, which calculates
the geographic distributions of user-selected markers from
Stanford SNP genotyping data (33, 34). A different genetic
pattern distribution of PCOS markers could be reflected in
different phenotypic features of the disease, resulting from
adaptive evolution (19, 28, 35) or from genetic drift gen-
erated by a serial founder effect occurring during the an-
cient human migrations out of Africa (36). Accordingly,
the decay of expected heterozygosity as measure of genetic
variation accompanies the increase of genetic and geo-
graphic distance from Africa (33, 34, 37). But the overall
constant prevalence of the disease remains unexplained.
The determination of the genetic background and its
relationship with the phenotype may be relevant to opti-
mize the pharmacological treatment of the disease and
protocols for assisted reproduction. To define the degree
of similarity of the PCOS genotypes, we show a popula-
tion genetics analysis by Bayesian clustering and an eval-
uation of pairwise genetic distance using SNPs data from
different populations, available in online databases. The
genotype-phenotype link and the correlation between ge-
netic and geographic data are discussed from an evolu-
tionary point of view.
Materials and Methods
A detailed description of the methods is available as Supple-
mental Materials and Methods.
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SNP selection
The genetic analyses were performed using the frequencies
data of the 17 PCOS-related SNPs of individuals from human
populations sampled in different world regions. The SNP panel
(Supplemental Materials and Methods) was taken from two
GWAS (20, 21), which found a strong association between
PCOS and the 17 genetic markers. The SNP data were obtained
from the HGDP-CEPH (Centre d’Etude du Polymorphisme Hu-
main) Stanford (33, 34), 1000 Genomes (The 1000 Genomes
Project Consortium, 2010) (38) and in part from the HapMap
(The International HapMap Consortium, 2003) (39) panels,
which provide SNP frequencies and geographical coordinates of
a wide number of human populations worldwide, to ensure a
good coverage in the territorial distribution among the conti-
nents. Based on their geographic coordinates, the populations
were grouped by continent (Supplemental Table 1). All the ge-
netic data are from both male and female individuals unselected
for PCOS, ensuring that the analysis takes into account males as
carrier of a PCOS-linked genotype and avoiding the bias arising
from the use of only PCOS patients.
Selection of PCOS phenotypes
In order to evaluate the link between genotype and ethnicity,
the geographical distribution of the different PCOS phenotypes
was evaluated by analyzing the clinical data registered in the
scientific literature (Supplemental Materials and Methods). Phe-
notypic data are shown in a world map (Figure 1).
Human genetic clustering analysis
Genetic clustering analysis assigns the individuals to the
group (cluster) that best represents their genetic background,
calculated using the frequencies of PCOS markers. To this end,
SNPs data from individuals were used and the genetic population
stratification was inferred by the Bayesian analysis implemented
in STRUCTURE 2.3.4 software (Pritchard Lab) (40). The num-
ber of subpopulations (K) in which the individuals were assigned
was selected using the K method (41) (Supplemental Figure 1).
The degree of affinity of the populations to the resulting genetic
clusters is expressed as a numeric value (Q value) by the software.
Thus, Q values define an estimation of ancestry, inferred by the
SNP frequencies. Then, Q values were grouped for world area,
and used for a graphical representation together with geograph-
ical and clinical data.
The genotype-phenotype link was obtained from the analysis
of geographical data and genetic clustering. It was confirmed by
principal component analysis implemented in National Institute
on Aging (NIA) Array Analysis software (42) using the SNP
frequency data.
Evaluation of the genetic drift
To evaluate the contribution of the genetic drift in the estab-
lishment of the modern PCOS markers distribution, a linear re-
gression of the expected/observed heterozygosity and genetic
against geographic distance was performed (36). The SNPs panel
was used to obtain the heterozygosity data and to calculate the
Figure 1. World distribution of the affinity to the genetic clusters and PCOS phenotypes prevalence. A, Bar plots of individual Q values calculated
by the STRUCTURE software assign each individual to different subpopulations that matches the main world areas, with a certain degree of
admixture. The analysis was performed differentially for the HGDP and the 1000 Genomes merged together with the HapMap samples. Each color
indicates the membership of individuals in a genetic cluster (K 5); Af, African; CA, Central Asian; ME, Mediterranean/Middle Eastern; Eu,
European; Am, American; Oc, Oceanian. B, Pie chart of cluster affinity among continents, indicating the frequencies of the PCOS susceptibility
markers. The charts were obtained as the means of the Q values by merging the HGDP, 1000 Genomes, and HapMap populations for each
genetic cluster (colors of the pie charts do not refer to panel A). The overall prevalence of a genetic cluster is different between the geographic
area, suggesting a link with the corresponding PCOS phenotype and clinic features, which were obtained by a review of the literature; green,
cluster 1; red, cluster 2; blue, cluster3; yellow, cluster 4; magenta, cluster 5; n.a., data not available or not assessed.
E2414 Casarini and Brigante PCOS Genotypes and Phenotypes J Clin Endocrinol Metab, November 2014, 99(11):E2412–E2420
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fixation index (Fst) as a measure of pairwise genetic distance (43)
resulting by comparing each world population vs Africans. A
scatter plot of Fst and heterozygosity against the geographic dis-
tance was illustrated by the waypoints-method previously de-
scribed (36, 44). Briefly, the geographic distance between pop-
ulations was calculated using Addis Ababa in Ethiopia as the
starting point and taking into account the kilometers covered by
humans during their expansion worldwide through migratory
waypoints. The waypoints were chosen simulating the migratory
routes (Supplemental Table 2), assuming that humans bypassed
the natural obstacles during migrations, such as oceans and high
mountains. The radius of the Earth was also considered for the
calculation of the geographic distance.
Statistical analysis and image software
ANOVA, ttests, or linear regression analysis was applied as
appropriate and indicated in the figure legends. The statistical anal-
ysis was performed by GraphPad Prism software (GraphPad).
Results
Geographical distribution of PCOS genotypes and
phenotypes
Bayesian genetic clustering analysis assigned the indi-
viduals to five subpopulations (K 5) obtained from the
estimation of the proportion of ancestry inferred by the
SNP frequencies. It can be defined by the Q value as the
degree of affinity of the population to each genetic cluster
by the SNPs combination of the individuals within the
indicated geographic area. Thus, the degree of prevalence
of each cluster is variable among the world continents,
revealing that human populations could be divided into
five groups with geographically different, non-homoge-
neous genetic background calculated using the frequency
of PCOS markers, though a degree of admixture exists
(Figure 1A). The proportion of affinity of the populations
to each genetic cluster is also illustrated for each world
area, which is represented by the prevalent PCOS geno-
type and phenotype (Figures 1B and 2). The metabolic
phenotype characterized by insulin resistance, metabolic
syndrome, type 2 diabetes, hypertension, and acanthosis
nigricans is dominant in Asia, especially Central Asia, and
in America. The hyperandrogenic phenotype predomi-
nates in European, Mediterranean, and Middle Eastern
patients, who show the most severe hirsutism. Consider-
ing African and Oceanian PCOS–affected women, the
phenotype is characterized by both hirsutism and insulin
resistance with a predominant role of the latter feature.
Indeed, a certain degree of mixed PCOS phenotypes co-
Figure 2. Box and whiskers plot of the overall continental membership in each genetic cluster. The continents are represented by the distribution
of the Q values calculated by the STRUCTURE software. The charts, A, were obtained as the means of the Q values by merging the HGDP, 1000
Genomes, and HapMap populations for each genetic cluster. Each cluster is peculiar for a specific geographic area because of the
nonhomogeneous distribution of PCOS susceptibility marker frequencies. The acronym above the bars indicates a significant difference vs Africa,
Af; America, Am; Central Asia, CA; Europe, Eu; East Asia, EA; Middle East/Mediterranean area, ME; and Oceania, Oc. Kruskal-Wallis and Dunn’s
post-test (P.0001). B, Relationship between genetic background and PCOS phenotype. The genetic clusters are represented by colored ovals
and located in the position of the corresponding phenotype (Figure 1). Prevalence of each cluster in each world area is proportional to the area of
the oval, calculated using Q values; green, cluster 1; red, cluster 2; blue, cluster3; yellow, cluster 4; magenta, cluster 5. C, Clustering by principal
component (PC) analysis performed using SNP genotypes in relation to the metabolic and hyperandrogenic PCOS phenotypes (cumulative
percentage of data set coverage from PC1 and PC2 54.187%). The populations are represented by points colored depending on their
geographical origin (left panel) or prevalent phenotype (right panel).
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exists in each world population, as a result of genetic ad-
mixture (Figure 1).
Genotype-phenotype link
The analysis of the geographical distribution of the
merged Q values reveals that the affinity to a predominant,
peculiar genetic cluster is typical for each continent (Figure
2). Thus, the genetic background inferred by PCOS mark-
ers is different and nonhomogeneous among the human
populations from diverse world areas (Figure 2A). Cluster
1 is predominant in Africans. Cluster 2 is typical in Central
Asian, European, and Mediterranean/Middle Eastern
people, but with a lesser extent of membership to the clus-
ter 1, revealing that these populations share a similar ge-
netic background, calculated using PCOS markers. How-
ever, Central Asians share a certain degree of membership
also to Cluster 5 together with East Asians. Cluster 3 is
typical of Americans and Eastern Asians. Cluster 4 is typ-
ical of Oceanians and partly of Africans. The degree of
severity of the two main PCOS phenotypes results from the
contribution of the genetic background. Each PCOS ge-
notype is linked to its geographic area with a peculiar
combination of prevalent PCOS features. This is shown by
cluster memberships, calculated as the Q value of the prev-
alent clusters in each geographic area (Figure 2B). Indeed,
cluster 1 is well represented in European, Mediterranean/
Middle Eastern, African, and American people, where hy-
perandrogenic hirsutism is mid/severe. Independently of
the PCOS features, cluster 2 is prevalent where the phe-
notype is more severe. Clusters 3 and 5 are represented in
association with the metabolic phenotype, which mainly
differs for the overall severity and type of its features. Af-
rican and Oceanian share a similar phenotype (cluster 4)
characterized by mid degrees of metabolic risk and hy-
perandrogenism, suggesting a genetic similarity for PCOS
markers between these populations, according to the re-
sult of genetic clustering at K 4 (HGDP samples, Sup-
plemental Figure 1). The link between PCOS genotype and
phenotype was confirmed by principal component anal-
ysis (Figure 2C), given that the population characterized
by the metabolic or hyperandrogenic phenotype shares
peculiar graph areas. However, all clusters are represented
in each geographic area (Figures 1 and 2), probably con-
tributing to the PCOS features and its severity (Figure 2).
Genetic diversity resulting from PCOS markers
The measure of the genetic distance, Fst, calculated for
the panel of PCOS susceptibility markers reveals a strong
diversity in the genetic background among human popu-
lations, grouped by continents (Figure 3). The pairwise Fst
of the non-Africans vs Africans increases together with the
geographic distance from Africa, producing R
2
0.21
Figure 3. Analysis of the genetic distance (Fst) and decay of heterozygosity between continents. The charts were obtained by merging the data
from HGDP, 1000 Genomes, and HapMap populations. A, Scatterplot of heterozygosity and geographic distance. The expected heterozygosity
calculated for PCOS susceptibility loci decreases together with geographic distance, evaluated by linear regression. B, Box and whiskers plot of Fst
distribution grouped for continents. The acronym above the bars indicates a significant difference vs Africa, Af; America, Am; Central Asia, CA;
Europe, Eu; East Asia, EA; Middle East/Mediterranean area, ME; and all other continents, ALL. Kruskal-Wallis and Dunn’s post-test (P.0001). C,
Scatterplot of Fst and geographic distance calculated using the waypoints. Each point indicates the comparison between African vs other
populations, as specified in the figure legend. Fst calculated for PCOS susceptibility loci increases together with geographic distance, evaluatedby
linear regression.
E2416 Casarini and Brigante PCOS Genotypes and Phenotypes J Clin Endocrinol Metab, November 2014, 99(11):E2412–E2420
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(P.0001) calculated by linear regression (Figure 3C)
and indicating the strong contribution of genetic drift in
the establishment of PCOS markers distribution. The de-
cay of the expected heterozygosity (Figure 3A) strengthens
this observation. The result is corroborated by the increase
of Fst and decay of heterozygosity, calculated for a wider
range of genetic markers in a previous study, when plotted
against the distance from the putative starting point of
human migrations, in Ethiopia (36, 37). Differently from
what expected, the observed heterozygosity does not de-
cay with distance, suggesting a relatively recent genetic
admixture. Moreover, the Fst distributions in Africans vs
other populations (Figure 3A) is different among conti-
nents, indicating strongly diverse, nonhomogeneous allele
frequencies in the distribution of PCOS markers world-
wide (Figure 3).
Discussion
Previous stratification analyses using a wide number of
genetic markers showed that the modern human popula-
tion comprises six main genetic clusters depending on the
ethnic background, reflecting with surprising accuracy the
ethnicity and admixture degree of ancestry (45). Using the
PCOS markers human population was stratified into five
different genetic clusters falling within two main PCOS
phenotypic groups. Thus, PCOS results in a hyperandro-
genic and in a metabolic phenotype, reflecting the world
distribution of the degree of affinity to genetic clusters.
This analysis provides evidence that PCOS ethnic varia-
tions are strongly determined by the genetic background in
humans (27, 34, 4648), as already demonstrated by a
comparative experiment between different PCOS mouse
strains (49). Genetic cluster analysis relies on the simul-
taneous combination of different SNPs, providing a higher
level of accuracy than case-control studies, which, in fact,
yielded conflicting results (50–53), not resulting in any
clear cause-effect indication related to ethnicity and pro-
viding a hundred putative markers not independently con-
firmed (19, 51). The study of ethnic variations of PCOS
genotype-phenotype link may be a useful approach for the
pharmacological treatment of the disease and during in-
fertility treatment.
PCOS phenotypes
The severity of the PCOS phenotypes may result from
different combinations of SNPs represented by the clusters
(Figure 1 and Figure 2), eg, Americans and Asians with a
prevalence of the metabolic phenotype, belonging to dif-
ferent prevalent clusters (3 and 2, respectively; Figures 1B
and 2). Conversely, European and Mediterranean/Middle
Eastern people share the hirsute-hyperandrogenic pheno-
type and a high affinity to cluster 2, but also the affinity to
clusters 1 and 4 is high among populations with a mid
hyperandrogenic phenotype, although characterized by
metabolic features rather than hirsutism. Thus, the ancient
humans’ migratory routes do not completely reflect the
current distribution of the PCOS phenotypes. Additional
considerations regarding the distribution of the genotypes
and phenotypes are available separately (Supplemental
Discussion).
PCOS and genetic diversity among humans
Although other alternatives were proposed and dis-
cussed (54, 55), Fst remains a widely used measure of
genetic distance. The pairwise Fst calculated for the var-
ious populations vs Africans increases together with the
geographic distance from Africa. This result is consistent
with previous data showing that genetic diversity is de-
termined by a serial founder effect that occurred during the
ancient human migrations across the continents (36). The
increase of Fst with the geographic distance calculated for
PCOS markers in humans is the same of that previously
observed for a wider set of genetic markers from different
organisms (36, 56–59), suggesting that its distribution is
the result of the random genetic drift. Nevertheless, the
variations of PCOS phenotypes among continents is dis-
played through various characteristics and symptoms ap-
parently incoherent with the geographic distance (Figure
3), probably as a result of genetic admixture rather than
natural selection. In fact, each world population shares a
different degree of affinity with the five genetic clusters,
and therefore it may differently contribute to phenotype
determination. Limitations due to genetic admixture were
discussed separately (Supplemental Discussion).
All things considered, the overall continental variabil-
ity of the two main PCOS phenotypes is clearly linked to
a peculiar genetic background, resulting from genetic drift
and indicating that different genetic markers may reflect
convergent phenotypic features.
Natural selection or genetic drift?
These data suggest that PCOS genotype and phenotype
may be not strongly affected by natural selection during
human evolution. Nevertheless, the reason why the prev-
alence of PCOS is similar among the different world con-
tinents remains to be demonstrated. A large number of
evolution-based theories were produced and extensively
discussed (16), providing rational evaluations for the evo-
lution of different PCOS phenotypes in females, especially
the metabolic phenotype, but not for the overall constant
prevalence of the disease. Surprisingly, none of these the-
ories considers the male as the carrier of an hyperandro-
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genic trait, which may reasonably provide an improve-
ment of his individual fitness, likely emphasizing the male
secondary sex characteristics. Indeed, both sexes share
most of their genomes and express the same traits, how-
ever resulting in antagonistic selection (60, 61). From this
point of view, the prevalence of PCOS among different
human populations may be the result of the balance be-
tween a positive selection in males against a negative se-
lection in females. Our results are strengthened by the
demonstration that natural selection favors in similar pro-
portions both protective and risk alleles for type 2 diabetes
(62), suggesting that the phenotype linked to the disease
results in opposite effects on the fitness of both sexes. Pre-
vious observations in other mammals support this hypoth-
esis, since the selection for the sex hormone testosterone
leads to antagonistic reproductive fitness between parents
and their opposite-sex progeny (63). On the other hand, it
is well known that evolution is often sex-dependent in
different species (6467), given that alleles can have pos-
itive effects on fitness in one sex and negative in the other,
resulting in intralocus sexual conflict (61, 68). Different
genetic background for PCOS converging in two main
phenotypes together with overall constant prevalence of
the disease support the presence of intralocus sexual con-
flict, which may have affected the decay of observed
heterozygosity. Even if speculative, in humans this mech-
anism seems to be a “bug” inherited from admixture with
different hominids or from an ancient genome evolved in
environmental and social conditions, strongly different
from those in which Homo sapiens lived in the last
100 000 years (69, 70), but every hypothesis in this regard
must be demonstrated.
Summary
The phenotypic expression of PCOS varies among hu-
man populations, depending on ethnicity. The distribu-
tion of previously identified susceptibility disease markers
results in different, nonhomogeneous continental genetic
backgrounds by Bayesian clustering, reflecting the ethnic
distribution of the main PCOS phenotypes. Thus, a clear
indication for PCOS ethnicity is shown, taking into ac-
count a certain degree of genetic admixture between hu-
man populations. The genetic distance increases together
with the distance from Africa, suggesting that the modern
distribution of PCOS susceptibility markers is the result of
genetic drift likely due to a serial founder effect occurred
during the ancient human migrations as alternative to the
natural selection theory. Intralocus sexual conflict may
contribute to the maintenance of an overall constant prev-
alence of PCOS measured in females. The analysis of the
genetic background may lead to important implications
for the pharmacological approach to the disease.
Acknowledgments
We thank Professor Manuela Simoni for her commitment, sup-
port, and guidance in the field of endocrinology.
Address all correspondence and requests for reprints to: Livio
Casarini, PhD, Unit of Endocrinology, Nuovo Ospedale Civile
Sant’Agostino Estense (NOCSAE), Via P. Giardini 1355, 41126
Modena, Italy. E-mail: livio.casarini@unimore.it.
This work was supported by a grant of the Italian Ministry of
Education, University and Research, No. PRIN 2010C8ERKX.
Disclosure Summary: The authors have nothing to disclose.
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... Casarini and Brigante 76 reported women from Asia and America to more often be represented by the metabolic phenotype of PCOS, which is typically characterized by central obesity, high BMI, insulin resistance and increased risk of T2DM.76 However, women from Europe and the Middle East often have the more hyperandrogenic phenotype, which is typically characterized by HA, hirsutism and androgenic alopecia.76 ...
... Casarini and Brigante 76 reported women from Asia and America to more often be represented by the metabolic phenotype of PCOS, which is typically characterized by central obesity, high BMI, insulin resistance and increased risk of T2DM.76 However, women from Europe and the Middle East often have the more hyperandrogenic phenotype, which is typically characterized by HA, hirsutism and androgenic alopecia.76 A recent systematic review examining dysglycaemia in women with PCOS found that there was substantial heterogeneity and that ethnicity explained a significant amount of this heterogeneity. ...
Article
Full-text available
Polycystic ovary syndrome (PCOS) is the most common endocrinopathy affecting 8‐13% of reproductive‐aged women. The aetiology of the syndrome is complex, with genetic susceptibility, androgen exposure in early life and adiposity related dysfunction leading to perturbance in hypothalamic‐ovarian function. PCOS clinical features are heterogeneous, with manifestations arising even in early adolescence, developing into multisystem reproductive, metabolic and psychological manifestations in adulthood. In this review, we will discuss challenges in the diagnosis of PCOS and understanding of the natural history of PCOS. This article is protected by copyright. All rights reserved.
... Polycystic Ovarian Syndrome (PCOS) is one of the major reproductive health issues, currently recognized to be a multifactorial, complex endocrine disorder of less known etiology with an intricate pathophysiology [1]. It is a familial, multifaceted condition associated with different clinical manifestations (Fig:1) such as, ovarian dysfunction, infertility, irregular menstrual cycles, anovulation, hyperandrogenism, hirsutism, acne, obesity, hypertension, diabetes mellitus, and cardiovascular abnormality, dyslipidemia, elevated pro-inflammatory cytokines, metabolic abnormalities and many conditions of the metabolic syndromes (MetS), depending on genetic background which is influenced by environmental factors [2][3][4][5][6][7][8][9][10]. Furthermore, Women with PCOS have a potential risk of gynecological cancer morbidities [11][12] such as; endometrial Cancer, ovarian cancer and breast cancer. ...
... Specifically, SA variation has been implicated in the maintenance of polycystic ovary syndrome (Casarini and Brigante 2014) A number of studies have demonstrated varying levels of evidence for SA genetic variation in a wide range of organisms, including mammals (Foerster et al. 2007;Mokkonen et al. 2011), birds (Merilä et al. 1997;Price and Burley 1994), reptiles (Svensson et al. 2009), insects (Chippendale et al. 2001Fedorka and Mousseu 2004;Gibson et al. 2002;Rice 1992) and dioecious plants (Delph et al. 2011). These studies are based on two main approaches. ...
Thesis
Adaptive evolution occurs when selection acts on genetic variation for phenotypic traits. In doing so, selection is expected to remove fitness variation in the population. Contrary to this expectation, DNA sequencing has shown that populations harbour high levels of standing genetic variation for fitness. This paradox results in a long-standing question: what maintains genetic variation? One possible mechanism is ‘balancing selection’, where selection actively maintains polymorphism. Once considered unlikely, studies using genomic and phenotypic approaches have recently given new support for balancing selection and have provided evidence of balancing selection in several species. However, it is often difficult to connect genetic and phenotypic evidence for balancing selection with evidence of the action of selection in real time. This limits our understanding of how balancing selection occurs and its contribution to maintaining genetic variation. To address these knowledge gaps, I first assayed the fitness effects of a polymorphism in the Drosophila melanogaster gene fruitless, which shows a signature of balancing selection in wild populations. I show that this polymorphism displays antagonistic pleiotropy, a possible mechanism for balancing selection at this locus (Chapter 2). I next used experimental evolution and pool-sequencing to track the frequency of the fruitless polymorphism over time in laboratory populations (Chapter 3). I was able to demonstrate that the fruitless polymorphism is probably evolving under balancing selection in these populations, although this result is complicated by 44% of putatively neutral SNPs also being diagnosed as under balancing selection. I next expanded this approach to diagnose selection at 397 candidate sexually antagonistic SNPs. 60% appeared to be under balancing selection (Chapter 4). The equilibrium allele frequency of these SNPs was positively related to that in two wild populations, illustrating that the short-term evolution in the cages is correlated to long-term evolution in wild populations. That shows that selection is consistent and supports the inference of balancing selection. Overall, this thesis describes the action of balancing selection in maintaining fitness influencing polymorphisms in D. melanogaster and develops methods to diagnose active balancing selection at the population level.
... The study also demonstrated a strong and positive association between the risk of having PCOS and delayed menopause, which suggested an attenuation of ovarian ageing in these women (Day, Hinds et al. 2015). This data linked with the hypotheses proposed earlier that a genetic predisposition to delayed reproductive senescence in PCOS would support the evolutionary paradox of being highly prevalent disease that impairs female reproductive competence ; (Casarini and Brigante 2014). ...
Thesis
Polycystic ovary syndrome (PCOS) is the main cause of female infertility worldwide with high comorbidity and economic burden. It is mainly characterized by hyperandrogenism, oligo/anovulation and polycystic appearing ovaries. Moreover, most women with PCOS exhibit higher levels of circulating luteinizing hormone (LH), suggestive of heightened gonadotropin-releasing hormone (GnRH) release. Additionally, PCOS patients also exhibit 2-3x higher levels of Anti-Müllerian Hormone (AMH) as compared to healthy controls.While the exact origin of PCOS is unknown, familiar clustering and twin studies of PCOS patients and their relatives suggest a strong heritable component in PCOS. However, the candidate genes identified account for only <10% of the estimated 70% heritability of PCOS, implying that it may originate during intrauterine development and that environmental factors, such as hormonal imbalances during fetal life, could be involved in the onset of PCOS.In this study, we first measured AMH levels in a cohort of pregnant women with PCOS and control women which revealed that AMH is significantly more elevated in the former group versus the latter, we then modelized our clinical findings by exposing pregnant mice to high concentration of AMH during a specific temporal window and showed that this fetal exposure leads to a cascade of alterations impacting the maternal brain, the ovaries, and the placenta, which consequently reprogram the fetal brain and induce the acquisition of the major PCOS cardinal neuroendocrine reproductive features, namely hyperandrogenism, elevation in LH pulse frequency and oligo-anovulation, and a persistent rise in the GnRH neuronal firing activity in adulthood. Moreover, our results show that the long-term consequences of a short exposure to elevated AMH levels during gestation expand beyond the first generation exposed and that PCOS-like manifestations seem to be transmitted across subsequent generations of females.Intrestingly, using a pharmacological approach, we demonstrate that tempering GnRH signaling pathway rescues the neuroendocrine phenotype of PCOS-like animals, restoring their normal hormonal levels, estrus cyclicity and ovarian morphology.Lastly, we sought to understand how early exposure to AMH excess would affect the neuroendocrine and reproductive features of the male offspring. Here, we demonstrate that prenatal AMH treatment profoundly impacts the Hypothalamic-Pituitary-Gonadal (HPG) axis function in males, which fail to engage the testosterone surge at birth observed in control newborns, leading to a feminization of sexually dimorphic circuitries of their brains, an increase in LH, a drastic decrease in testosterone levels, severe alterations in the testicular steroidogenesis and morphology as well as a higher risk of developing cryptorchidism in adulthood. Thus, it could be of clinical interest to relate findings from this study to the reproductive phenotype of sons of PCOS women, who are exposed during gestation but not systematically investigated in adulthood.Collectively, our results challenge the concept of PCOS originating in utero and appear to consolidate the role of AMH as a trigger of the pathogenesis, suggesting that an altered hormonal milieu during early life associated with PCOS may not only affect the female fetus but also the male fetus exposed and that these alterations could be transmitted across multiple generations.These findings point to PAMH mouse model as an excellent preclinical tool to investigate both neuroendocrine disturbances of PCOS and how developmental programming effects are transmitted, while offering a therapeutic avenue for the treatment of the disease.
... Two GWASs targeting PCOS have been performed in China; they identified 11 variants associated with PCOS risk in Han Chinese women who were diagnosed with PCOS (i.e., who fulfilled all three Rotterdam criteria) [16,17]. However, not all loci for PCOS have been replicated in European women, which may speak to the variation in susceptible single-nucleotide polymorphisms (SNPs) among distinct racial and ethnic groups [18]. Some researchers believe that different combinations of SNPs may underlie the severity of the PCOS phenotypes, with Americans and Asians being more often characterized by the metabolic phenotype, and Europeans and Middle-Eastern women having a higher prevalence of hyperandrogenic phenotype [19]. ...
Article
Full-text available
Background: Polycystic ovary syndrome (PCOS) is a common disorder in women of reproductive age. Over the last few decades, research studies have revealed that PCOS is strongly associated with metabolic disorders, including metabolic syndrome, obesity, insulin resistance and prediabetes. Clinical observation has shown that women with PCOS are expected to have an increased risk of developing type 2 diabetes (T2DM) in the future. Aim: To assess the hazard ratio (HR) of T2DM between women with/without PCOS. Methods: This population-based, retrospective cohort study evaluated data retrieved from the National Health Insurance Research Database. The subjects were women with PCOS (n = 2545) identified on the basis of diagnosis, testing, or treatment codes, and women without PCOS as controls (n = 2545). The HR of T2DM between women with or without PCOS was the main outcome measure analyzed. Results: Our study found that, during a 10-year follow-up period, the overall incidence of T2DM was 6.25 per 1000 person-years in the PCOS group compared with 1.49 in the control group. After adjustment for potential confounding variables, the overall incidence of T2DM was higher in the PCOS group vs the control group (HR = 5.13, 95%CI: 3.51-7.48, P < 0.0001). The risk of developing T2DM subsequent to PCOS decreased with increasing diagnosis age: the adjusted HR was 10.4 in the 18-24-year age group, 5.28 in the 25-29-year age group, and 4.06 in the 29-34-year age group. However, no such significant association was noted in women older than 35 years. Conclusion: These findings highlight the importance of prompting a more aggressive treatment to prevent diabetes in women diagnosed with PCOS at a young age, and, in contrast, the lessened importance of this type of intervention in women diagnosed with PCOS at a late reproductive age.
Article
Aim: To ascertain the risk of progression to diabetes among Chinese women with PCOS. Methods: Women with PCOS (n=3978) were identified from the Hong Kong Diabetes Surveillance Database based on the ICD-9 code for PCOS diagnosis and women without PCOS served as controls (n=39780), matched 1:10 by age. Result: (s): The mean follow-up was 6.28 ± 4.20 and 6.95 ± 4.33 years in women with PCOS and controls, respectively. The crude incidence rate of diabetes was 14.25/1000 person-years in women with PCOS compared with 3.45 in controls. The crude hazard ratio of diabetes in women with PCOS was 4.23 (95% CI: 3.73-4.80, p<0.001). Further stratified by age group, the risk of developing diabetes decreased with increasing age but it remained significantly higher in women with PCOS across all age groups. It also suggested that the incidence rate of diabetes in women with PCOS aged 20-29 is highly comparable to that in healthy women aged ≥40. More than half of the incident diabetes captured during the follow-up in women with PCOS cohort were young-onset diabetes. Conclusion: Women diagnosed with PCOS at a younger age have the highest relative risk of developing diabetes, suggesting frequent glycemic status screening is required to detect diabetes at an early stage.
Article
Full-text available
To identify a peculiar genetic combination predisposing to differentiated thyroid carcinoma (DTC), we selected a set of single-nucleotide polymorphisms (SNPs) associated with DTC risk, considering polygenic risk score (PRS), Bayesian statistics, and a machine learning (ML) classifier to describe cases and controls in 3 different datasets. Dataset 1 (649 DTC, 431 controls) has been previously genotyped in a genome-wide association study (GWAS) on Italian DTC. Dataset 2 (234 DTC, 101 controls) and dataset 3 (404 DTC, 392 controls) were genotyped. Associations of 171 SNPs reported to predispose to DTC in candidate studies were extracted from the GWAS of dataset 1, followed by replication of SNPs associated with DTC risk (P<0.05) in dataset 2. The reliability of the identified SNPs was confirmed by PRS and Bayesian statistics after merging the three datasets. SNPs were used to describe the case/control state of individuals by ML classifier. Starting from 171 SNPs associated with DTC, 15 were positive in both the datasets 1 and 2. Using these markers, PRS revealed that individuals in the fifth quintile had a 7-fold increased risk of DTC than those in the first. Bayesian inference confirmed that the selected 15 SNPs differentiate cases from controls. Results were corroborated by ML, finding a maximum AUC of about 0.7. A restricted selection of only 15 DTC-associated SNPs is able to describe the inner genetic structure of Italian individuals and ML allows a fair prediction of case or control status based solely on the individual genetic background.
Article
Full-text available
During human evolution, major changes in our societal conditions and environment took place without sufficient time for concomitant genetic alterations, leading to out of step adaptation and diseases in women. We first discuss recent societal adaptation mismatch (menstrual bleeding; increases in cancers of reproductive organs, endometriosis; mother’s nursing; polycystic ovarian syndrome; transgenerational epigenetic modifications), followed by Darwinian out of step adaptation (labor difficulties; sex chromosomes, human diseases and sex disparity in genomic DNA). We discuss the evolutionary basis of menstrual bleeding, followed by recent increases in cancers of reproductive organs and endometriosis. The importance of breastfeeding by mothers is also emphasized. Earlier onset of menarche, decreased rates of childbirths and breastfeeding resulted in increased number of menstrual cycles in a lifetime, coupled with excess estrogen exposure and incessant ovulation, conditions that increased the susceptibility to mammary and uterine cancers as well as ovarian epithelial cancer and endometriosis. Shorter lactation duration in mothers also contributed to more menstrual cycles. We further discuss the evolutionary basis of the prevalent polycystic ovary syndrome. During the long-term Darwinian evolution, difficulties in childbirth evolved due to a narrowed pelvis, our upright walking and enlarged fetal brain sizes. Because there are 1.5% genomic DNA differences between woman and man, it is of significance to investigate sex-specific human physiology and diseases. In conclusion, understanding out of step adaptation during evolution could allow the prevention and better management of female reproductive dysfunction and diseases.
Chapter
Polycystic ovary syndrome (PCOS) is one of the most common reproductive health problems of women, causing irregular periods and potential infertility amongst other challenging symptoms. Effective treatment remains a significant challenge and is largely achieved through hormonal medication and lifestyle changes. This third edition covers the aetiology, pathology, impact on fertility and effective medical and surgical management. The content has been thoroughly revised in line with updated guidelines and research developments in the field. A new chapter on the patient's perspective has been included, bringing valuable insight into the lived experience of the condition. Mood disorders and the psychological aspects of PCOS are also covered for the first time. This is a key reference for all clinicians involved in the care of patients with PCOS, including gynaecologists, IVF specialists and reproductive endocrinologists.
Article
We describe a model-based clustering method for using multilocus genotype data to infer population structure and assign individuals to populations. We assume a model in which there are K populations (where K may be unknown), each of which is characterized by a set of allele frequencies at each locus. Individuals in the sample are assigned (probabilistically) to populations, or jointly to two or more populations if their genotypes indicate that they are admixed. Our model does not assume a particular mutation process, and it can be applied to most of the commonly used genetic markers, provided that they are not closely linked. Applications of our method include demonstrating the presence of population structure, assigning individuals to populations, studying hybrid zones, and identifying migrants and admixed individuals. We show that the method can produce highly accurate assignments using modest numbers of loci—e.g., seven microsatellite loci in an example using genotype data from an endangered bird species. The software used for this article is available from http://www.stats.ox.ac.uk/~pritch/home.html.
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A method is presented by which the gene diversity (heterozygosity) of a subdivided population can be analyzed into its components, i.e., the gene diversities within and between subpopulations. This method is applicable to any population without regard to the number of alleles per locus, the pattern of evolutionary forces such as mutation, selection, and migration, and the reproductive method of the organism used. Measures of the absolute and relative magnitudes of gene differentiation among subpopulations are also proposed.
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Polycystic ovary syndrome (PCOS) is an endocrine disorder and the criteria are specified by hyperandrogenism, oligomenorrhea or amenorrhea and polycystic ovary morphology. Follicle stimulating hormone (FSH) has effects on oogenesis and follicle development. Several polymorphisms of FSH receptor (FSHR) are related to primary amenorrhea, hypoplastic ovary, and high serum levels of FSH. Thus, an increase in FSH level leads to follicle maturation and proliferation of granulosa cells. The aim of this study was to determine whether Ser680Asn and Ala307Thr polymorphisms of FSHR were associated with the clinical features of PCOS in a Korean population. PCOS patients (n=235) and control subjects (n=128) in the reproductive age were recruited from the Fertility Center of CHA General Hospital in Seoul, Korea. For Ser680Asn and Ala307Thr polymorphisms in FSHR, frequency of respective genotypes was measured and statistical analysis was performed. Haplotype analysis between Ser680Asn and Ala307Thr was also performed. We found that the Ser680Asn of FSHR is associated with PCOS (p=0.0195, OR=1.66). However, in case of Ala307Thr, the variant is negligible and is not associated with PCOS (p=0.6963, OR=1.08). In haplotype analysis, Ser680Asn and Ala307Thr polymorphisms are not related with PCOS. Consequently, the Ser680Asn polymorphism of FSHR might significantly affect PCOS patients, separately from the Ala307Thr polymorphism.
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Since the 1990 National Institutes of Health-sponsored conference on polycystic ovary syndrome (PCOS), it has become appreciated that the syndrome encompasses a broader spectrum of signs and symptoms of ovarian dysfunction than those defined by the original diagnostic criteria. The 2003 Rotterdam consensus workshop concluded that PCOS is a syndrome of ovarian dysfunction along with the cardinal features hyperandrogenism and polycystic ovary (PCO) morphology. PCOS remains a syndrome, and as such no single diagnostic criterion (such as hyperandrogenism or PCO) is sufficient for clinical diagnosis. Its clinical manifestations may include menstrual irregularities, signs of androgen excess, and obesity. Insulin resistance and elevated serum LH levels are also common features in PCOS. PCOS is associated with an increased risk of type 2 diabetes and cardiovascular events.