We hypothesize that the dynamics of water soluble arsenic (As), chromium (Cr), molybdenum (Mo), and vanadium (V) in soils might be controlled by the period of flooding due to changes of redox potential (EH), pH, and carriers of metals such as dissolved organic carbon (DOC), iron (Fe), manganese (Mn) and sulfate (SO42 −). Therefore, we aimed to assess the impact of different flood–dry-cycles on the temporal dynamics of pore water concentrations of As, Cr, Mo and V as affected by changes of soil EH/pH and dynamics of DOC, Fe, Mn and SO42 − in a contaminated floodplain soil collected at the Elbe River (Germany). For this purpose a specific groundwater lysimeter technique with two separate lysimeters which served as replicates was used. The groundwater level inside the lysimeters was controlled to simulate different flood–dry-cycles sequentially as follows: the long term (LT) includes 94 days of flooding followed by similar drying term. The short term (ST) comprises 21 days flooding followed by a similar drying term and was repeated six times. The entire experimental period (LT_ST) was about 450 days. The presented data are mean values of both lysimeters.