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For Review Only
Warming temperatures and smaller bo
dy sizes:
synchronous changes in growth of North Sea fishes
Journal:
Global Change Biology
Manuscript ID:
Draft
Wiley - Manuscript type:
Opinion
Date Submitted by the Author:
n/a
Complete List of Authors:
Baudron, Alan; University of Aberdeen, Zoology
Needle, Coby; Marine Scotland - Science, Marine Laboratory
Rijnsdorp, Adriaan D; IMARES, Fisheries
Marshall, Tara; University of Aberdeen, Zoology
Keywords:
climate change, temperature size rule, ectotherms, fish growth, von
Bertalanffy, Dynamic Factor Analysis, fisheries
Abstract:
Decreasing body size has been proposed as a universal response to
increasing temperatures. The physiology behind the response is well
established for ectotherms inhabiting aquatic environments: higher
temperatures decrease the aerobic capacity of individuals giving smaller
body sizes a fitness advantage through reduced risk of oxygen deprivation.
However, empirical evidence of this response at the scale of communities
and ecosystems is lacking for marine fish species. Here we show that over
a 40-year period six of the eight commercial fish species in the North Sea
examined underwent a synchronous reduction in asymptotic body size that
coincided with a 1-2ºC increase in water temperature. Smaller body sizes
decreased the yield-per-recruit of these stocks by an average of 23%.
Although it is not possible to ascribe these phenotypic changes
unequivocally to temperature, four aspects support this interpretation: (i)
the synchronous trend was detected across species varying in their life
history and life style, (ii) the decrease coincided with the period of
increasing temperature, (iii) the direction of the phenotypic change is
consistent with physiological knowledge and (iv) no synchrony was
detected in other species-specific factors potentially impacting growth. Our
findings support a recent model-derived prediction that fish size will shrink
in response to climate-induced changes in temperature and oxygen. The
smaller body sizes being projected for the future are already detectable in
the North Sea.
Global Change Biology
For Review Only
1
Warming temperatures and smaller body sizes: synchronous changes in growth of
North Sea fishes
Running head: Warming temperatures and smaller fish sizes
Alan R. Baudron
1*
, Coby L. Needle
2
, Adriaan D. Rijnsdorp
3
and C. Tara Marshall
1
1
Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone
Avenue, Aberdeen, AB24 2TZ, Scotland, UK.
2
Marine Scotland - Science, Marine Laboratory, PO Box 101, 375 Victoria Road, Aberdeen,
AB11 9DB, Scotland, UK.
3
IMARES, Institute of Marine Resources, and Ecosystem Studies and Aquaculture and
Fisheries Group, Haringkade 1, 1976 CP IJmuiden, The Netherlands.
*
Author to whom correspondence should be addressed
E-mail: alan.baudron@abdn.ac.uk, Telephone: +44 (0)1224-272648, Fax: +44 (0)1224-
272396
Key words: climate change, temperature size rule, ectotherms, fish growth, von Bertalanffy,
Dynamic Factor Analysis, fisheries.
OPINION
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Abstract
Decreasing body size has been proposed as a universal response to increasing temperatures.
The physiology behind the response is well established for ectotherms inhabiting aquatic
environments: higher temperatures decrease the aerobic capacity of individuals giving
smaller body sizes a fitness advantage through reduced risk of oxygen deprivation. However,
empirical evidence of this response at the scale of communities and ecosystems is lacking for
marine fish species. Here we show that over a 40-year period six of the eight commercial fish
species in the North Sea examined underwent a synchronous reduction in asymptotic body
size that coincided with a 1-2ºC increase in water temperature. Smaller body sizes decreased
the yield-per-recruit of these stocks by an average of 23%. Although it is not possible to
ascribe these phenotypic changes unequivocally to temperature, four aspects support this
interpretation: (i) the synchronous trend was detected across species varying in their life
history and life style, (ii) the decrease coincided with the period of increasing temperature,
(iii) the direction of the phenotypic change is consistent with physiological knowledge and
(iv) no synchrony was detected in other species-specific factors potentially impacting growth.
Our findings support a recent model-derived prediction that fish size will shrink in response
to climate-induced changes in temperature and oxygen. The smaller body sizes being
projected for the future are already detectable in the North Sea.
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Introduction
Aquatic environments pose inherent challenges for ectothermic organisms respiring
underwater (Graham, 2006). Warming temperatures compound these challenges by
increasing anabolic oxygen demand while decreasing oxygen solubility. Any imbalance
between oxygen demand and oxygen supply will constrain aerobic scope thereby impairing
individual performance (Pörtner & Knust, 2007). In warming environments, smaller-sized
individuals are better able to balance demand and uptake because of their larger surface area
to volume ratio
(Pauly, 2010). These physiological constraints lead to the expectation that
individuals experiencing higher temperatures will have smaller body sizes, an outcome
known as the temperature-size rule (TSR) (Atkinson, 1994). The physiological basis
underpinning the TSR (Pörtner & Knust, 2007; Forster et al., 2011) combined with cross-taxa
support (Gardner et al., 2011; Forster et al., 2012; Edeline et al., 2013) has led to smaller
body size being proposed as a universal outcome of warming temperatures
(Daufresne et al.,
2009). In marine ecosystems which include a high proportion of ectothermic species, the
implications of the TSR are profound. A recent simulation integrating this ecophysiological
understanding with temperature projections predicted that by 2050 the assemblage-averaged
maximum body weight of fish species would shrink by 14-24% globally due to the combined
impacts of smaller-sized species replacing larger-sized species and the TSR (Cheung et al.,
2013). This conclusion, which garnered global press coverage upon publication, has been
challenged on the grounds that the scale and the speed of the change are not credible (Brander
et al., in press). Criticism of the projection model was refuted by the authors (Cheung et al.,
in press). This debate highlights the need for an ecosystem-level test of whether body sizes of
fishes have synchronously decreased in regional seas that have undergone warming. While
the importance of TSR has been shown in laboratory conditions (Forster et al., 2012),
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empirical evidence is needed (Ohlberger, 2013). Statistical analyses of long term data series
are required to provide the most direct evidence for changes in body size caused by climate
warming (Daufresne et al., 2009).
Over the past 30 years water temperatures in the North Sea have increased by 0.2-0.6 °C per
decade with the rates of warming being rapid relative to other regional seas (Belkin, 2009).
During this period, declining body sizes have been observed in haddock (Melanogrammus
aeglefinus) (Baudron et al., 2011), herring (Clupea harengus) (Brunel & Dickey-Collas,
2010) and plaice (Pleuronectes platessa)
(van Walraven et al., 2010). The fact that three
species differing in their life histories, trophodynamics and vertical distribution in the water
column (Supplementary Table S1) exhibited smaller body sizes concomitant with a warming
environment is consistent with the claim that the TSR is a universal response. A complication
in establishing direct causality between warming temperatures and decreasing body sizes in
commercial stocks is that size-selective fishing mortality may select for genotypes affecting
growth (Enberg et al., 2012) and reduction in body size
could therefore be the result of non-
random genetic selection. Furthermore, commercial species experience particularly large
fluctuations in abundance that could introduce variability in growth rates via density-
dependent competition for resources (Taylor & Stefánsson, 1999). Unlike temperature, it is
difficult to see how these two factors could impact growth uniformly across species. The
scale and speed of an evolutionary response would be unique to each stock given that the
pattern and degree of selection varies across stocks and stocks differ in the life history traits
(e.g., age at maturity) that determine how quickly a phenotypic trait evolves (Supplementary
Table S1). Similarly, the mechanisms responsible for generating density-dependent growth
would also likely be species-specific given the variety in habitat and diet of North Sea fish
species (Supplementary Table S1). Although evolutionary and density-dependent changes in
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growth seem unlikely to vary synchronously across species both factors must be examined
for synchronicity. If no synchronous trends across species are detectable in these two factors
then logically they cannot be responsible for generating phenotypic changes that are
synchronous across species. Establishing that declines in body size are, firstly, synchronous
across a range of species, and secondly, concurrent with temperature would strongly imply
the “omnibus” effect of temperature.
Our aim was to test whether the North Sea fish assemblage exhibited synchronous declines in
asymptotic body size that were concurrent with increases in temperature, and consistent with
TSR. We used the von Bertalanffy growth function (VBGF)
(Pauly, 2010) to estimate L
∞
, the
asymptotic body length, on a cohort-by-cohort basis for eight North Sea fish species for
which age and size data were available at least annually over the past four decades. Statistical
analyses were performed to test for a synchronous trend in L
∞
across species and compare
this trend with the temperature trend. Annually resolved indices of fishing mortality and
density were also examined for synchronicity across species to determine the potential for
these factors to generate a synchronous trend in L
∞
. The implications for yield were examined
for species exhibiting a synchronous component in variability of L
∞
.
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Methods
Sea bottom temperatures (SBT) from 1970 to 2008 were obtained from the NORWECOM
model (Skogen & Søiland, 1998) which gives monthly mean values averaged over 0.25
degree latitude by 0.5 degree longitude rectangles. SBT values were averaged per roundfish
area (Supplementary Fig. S1a) and per year in order to match the spatial and temporal
resolution of the biological data. SBT time series showed the same trend in northern (areas 1
and 2) and southern (areas 5 and 6) regions with a ca. 3°C gradient (Supplementary Fig. S1b).
Age-length keys (ALKs) generated from data collected during annual International Bottom
Trawl Surveys (IBTS) of the North Sea are available for demersal and pelagic species from
the DATRAS database (http://datras.ices.dk) maintained by the International Council for the
Exploration of the Sea (ICES). ALKs for benthic flatfish species are estimated from a
combination of commercial samples, survey samples and otolith back-calculations (Rijnsdorp
et al., 2010). Our analysis was restricted to commercial species having long time series of
otolith-derived age estimates which are essential for modelling growth. Demersal (distributed
nearer bottom) species were haddock, cod (Gadus morhua), whiting (Merlangius merlangus)
and Norway pout (Trisopterus esmarkii). Pelagic (distributed nearer surface) species were
herring and sprat (Sprattus sprattus). Benthic (distributed on the bottom) flatfish species were
plaice and sole (Solea solea). Collectively, these eight species (hereafter referred to as stocks)
span a range of habitats, body sizes, and life history traits that are representative of the North
Sea fish assemblage.
ALKs give the number of sampled fish in a given 1-cm length class that were assigned
through otolith reading to age t in year y. For IBTS surveys conducted in quarter 1 age values
remained as integers (t) while ages used for quarter 2, 3 and 4 were t + 0.25, t + 0.5 and t +
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0.75, respectively. Because ALKs are generated through length-stratified sampling of the
catch, they do not accurately represent the true length distribution-at-age. To correct for this
bias, ALKs for each ICES roundfish area were raised by the catch-per-unit-effort per length
class for the area except for the two flatfish species where ALKs were raised by length
distributions instead. To account for the strong spatial gradient in temperature
(Supplementary Fig. S1), data for cod, whiting and herring were split into northern and
southern sub-stocks and the raised ALKs were combined for ICES roundfish areas 1 and 2
and for areas 5 and 6 to represent the northern and southern North Sea, respectively. Haddock
and Norway pout are found in the north, whereas sprat are found in the south. Plaice and sole
are found in the south but were split by sex to account for known differential growth that
gives rise to large phenotypic differences between males and females (Rijnsdorp et al., 2010).
Splitting gave a total of 13 sub-stocks and accounted for known sources of variation in
temperature (by region) and growth (by gender) that would otherwise have confounded the
analysis. For each sub-stock the growth of a cohort spawned in year y was modelled by fitting
the VBGF to the length distribution-at-age represented by the raised ALKs:
)1(
)(
0
ttK
t
eLL
−
−
∞
−=
where L
t
is the length (cm) at age t, K is the Brody growth parameter (year
-1
), and t
0
is the
hypothetical age (year) at length equal to 0. As cohort-specific values of L
∞
and K are
negatively correlated (Pauly, 2010) (Supplementary Fig. S2) examining temporal variation in
one of the two parameters is sufficient to describe growth. Examining variation in L
∞
by
cohort assumes that the growth trajectory of a cohort is established in the early stages of life,
an assumption supported experimentally
(Forster et al., 2011; Scott & Johnston, 2012). For
each sub-stock the VBGF was fit for cohorts 1970 to 2008; cohorts 1970 to 2001 were
modelled with data for ages 1 to 10 while cohorts 2002 to 2008 were modelled with nine to
three years of data. Outliers in the L
∞
time series (> 2 * average or L
∞
having standard errors
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>10% of the value) were omitted from subsequent analysis (see Supplementary Table S2).
For all other cohorts, estimated parameters (L
∞
, K and t
0
) had p-values <0.05. A Dynamic
Factor Analysis (DFA) (Zuur et al., 2003) was used to objectively estimate common trends in
the L
∞
time series of the sub-stocks considered. DFA is a multivariate extension of structural
time series which can analyse short, non-stationary time series containing missing values.
The aim of DFA is to model as few common trends as possible while giving a reasonable
model fit. Prior to inclusion in the DFA model, L
∞
time series for all sub-stocks were
standardized by subtracting the mean and dividing by the standard error
(Zuur et al., 2003).
The 13 time series were each modelled as a combination of common trends (x), factor
loadings (Z) plus some offset (a) as follows:
tsstisitss
axZxZtL
,,,,1,1,
...)(
ε
+
+
+
+
=
∞
where ε
t
~ MVN(0, R) with MVN standing for Multivariate Normal and R being the error
covariance matrix, s is the considered sub-stock and i is the number of common trends. The
magnitude and sign of Z indicate to what extent the common trends are related to the original
times series. DFA models with 1 to 6 common trends and with either a diagonal and equal or
a diagonal and unequal error covariance matrix were tested. The best of the twelve candidate
models was selected using the Akaike’s information criterion (AIC). Correlation tests
between the predominant common trend (Trend 1) and SBT were performed using different
time windows for temperature impacts: SBT experienced at age 0 (no lag), at age 1 (lag 1), at
age 2 (lag 2), during the first two years of life (average SBT from age 0 to 1) and during the
first three years of life (average SBT from age 0 to 2). Correlation tests between Trend 1 and
the common trend in density were performed to test for intra-cohort (no lag), inter-cohort (lag
1 and lag 2), and cumulative (sum of densities at lags 0 to 1, and lags 0 to 2) density-
dependent growth. Since, the purpose of these tests was to assess the correlation between
underlying trends rather than short-term, high frequency variations, the P-values presented do
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not account for autocorrelation as this would have involved detrending the time series.
Correlations were summarized by Pearson product-moment correlation coefficients. As
multiple tests were conducted, a sequential Bonferroni correction was applied to adjust the
level of significance of the multiple inferences.
To control for synchronicity in fishing mortality and density across species, the DFA and
correlation tests were repeated for both factors. Average fishing mortalities were obtained
from ICES (http://www.ices.dk/) 2012 assessment reports for the Working Group on the
Assessment of Demersal Stocks in the North Sea and Skagerrak (WGNSSK) and the Herring
Assessment Working Group (HAWG). Assessment data were available from 1970 to 2011
for all species apart from whiting, Norway pout and sprat which assessments began
respectively in 1990, 1983 and 1991. For stocks distributed across the northern and southern
North Sea (whiting and herring), a survey-based assessment (SURBA) model (Beare et al.,
2005) was used to obtain local estimates of total mortality in order to capture spatial gradients
in fishing pressure. Assuming a constant natural mortality, total mortality times series for
these two stocks were used as proxies for fishing mortalities. Abundance at age 1 indices
were used as a proxy for density (no sex-specific abundance index were available for plaice
and sole sub-stocks). For stocks distributed across the northern and southern North Sea, the
survey abundance at age 1 indices were split by area. For other sub-stocks, XSA abundance
at age 1 indices given in the 2012 assessment reports were used. For Norway pout North and
sole South, recruitment time series from the assessment were used as no abundance at age 1
indices were available. Data were available from 1970 to 2011 for all species apart from
whiting, Norway pout and sprat for which indices were available from 1990, 1983 and 1984
respectively.
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Comparative yield-per-recruit analyses were performed as a proxy for changes in yield prior
to and after changes in individual body size. Yield-per-recruit was approximated by
simulating a fishery on a single cohort composed of eleven year classes (from age 0 to age
10), and with an initial recruitment (abundance at age 0) of 10000 individuals. 5-year mean of
L
∞
and K prior and after changes in growth were used to compute length-at-age values,
assuming t
0
=0 for all sub-stocks. Length values were converted into weights-at-age using
length-weight relationships obtained from Marine Scotland and IMARES. Fishing mortality-
at-age was estimated by the mean over the last three historical years (2009 to 2011) while
natural mortality-at-age and proportion mature-at-age were assumed to be constant. For
plaice and sole the fishing mortality was assumed to be equal for both sexes. All estimates
were obtained from the 2012 assessment reports. The cumulative contribution to yield of the
successive year classes of the cohort were then summed and divided by the original number
of recruit to obtain approximations of yield-per-recruit.
All statistical analyses were performed using the R software (version 2.15.1; http://www.r-
project.org/). DFA was performed using the MARSS package (Holmes et al., 2012).
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Results and discussion
A decrease in L
∞ (
expressed as difference between average 1973-1977 and average 1993-
1997) of 29%, 13%, 29%, 10%, 19%, 16%, 13%, 1% and 12% (average 16%) was observed
for haddock North, whiting North, whiting South, herring North, Norway pout North, sprat
South, male sole South, female sole South and male plaice South, respectively (Fig. 1c-f and
h-l). These nine sub-stocks also exhibited narrow 95% confidence intervals (95%CI) around
L
∞
estimates. The four remaining sub-stocks (cod North, cod South, herring South and female
plaice South) showed divergent trends in L
∞
(Fig. 1a-b, g and m). Cod North, cod South and
herring South time series showed an increase in L
∞
but included high proportions of outliers
(Supplementary Table S2). The wide 95%CI for the two cod sub-stocks indicate that the
VBGF was a poor fit to the data and the high (>200 cm) values of L
∞
reflect near-linear
growth rather than the asymptotic growth assumed by the VBGF. Herring South showed a
sudden decline in the late 1970s (Fig. 1f) while L
∞
for female plaice South showed an
increase from 1970 to 1990 followed by a recent decrease (Fig. 1m).
The best model identified by DFA to describe temporal variation in L
∞
included two common
trends (Supplementary Table S3). Fitted values for all sub-stocks showed that the model
succeeded in describing the overall trends in L
∞
(Fig. 1). The DFA model captured the
decrease in L
∞
for the nine sub-stocks identified and exhibited narrow 95%CI apart from the
most recent cohorts which have fewer sampled age classes (Fig. 1c-f and h-l). The first
common trend (Trend 1) showed a steep decline from 1978 to 1993 after which it remained
stable (Fig. 2a). The second common trend (Trend 2) increased slightly until the early 1990s
after which it showed a sharp decline (Fig. 2c). A DFA model fitted with one common trend
only returned a trend almost identical to Trend 1 (Fig. 2a), which indicates that Trend 1 is
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predominant in describing the common trend in L
∞
(Zuur et al., 2003). The nine sub-stocks
showing a decrease in L
∞
from the mid-1970s to the mid-1990s (Fig. 1) were all positively
related to Trend 1 (Fig. 2b). Six of these sub-stocks (haddock North, whiting North, whiting
South, herring North, Norway pout North and male sole South) had similar factor loading
values (Z) on Trend 1, indicating that the stock-specific trends in L
∞
were equally well
described by Trend 1 (Fig. 2b). These sub-stocks also showed small Zs on Trend 2 (Fig. 2d).
Female sole South and male plaice South, although positively related to Trend 1, showed
larger Zs on Trend 2 (Fig. 2d).
Cod North, cod South, and female plaice South were negatively related to Trend 1 but
positively related to Trend 2 (Fig. 2b and 2d). Herring South was negatively related to Trend
2 and showed a different temporal trend (Fig. 1g). The high Z of female plaice South on
Trend 2 (Fig. 2d) suggested that Trend 2 was mainly driven by this sub-stock. Because the L
∞
time series for the cod sub-stocks and herring South included many outliers (Supplementary
Table S2) it is difficult to describe decadal-scale trends for these sub-stocks with confidence.
Flatfish sub-stocks showed mixed trends, with males of both species conforming to Trend 1,
whereas, the decrease in L
∞
was small in female sole South and absent in female plaice
South. Differences between males and females in their growth response to temperature have
been detected in fish (Kuparinen et al., 2011) although the physiological basis is unknown.
The common trend in L
∞
represented by Trend 1 describes the synchronous component of
variability in the L
∞
time series. Residual variation around Trend 1 for a given stock reflects
the influence of stock-specific factors and estimation error, neither of which are beyond the
scope of this study. Trend 1 showed concurrent and opposite variation with sea bottom
temperature (SBT) and the temperature increase through the 1980s was concurrent with the
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decline in L
∞
described by Trend 1 (Fig. 2e). This is consistent with the TSR prediction that
higher temperatures result in smaller body sizes. Furthermore, this cross-stock synchronicity
was detected when growth was examined by cohort suggesting that temperatures experienced
early in the life of the cohort are critical to determining L
∞
, a result also consistent with
current physiological understanding of growth (Forster et al., 2011; Scott & Johnston, 2012).
Trend 1 was significantly, negatively correlated (p ≤ 0.05) with the average monthly SBT
experienced at age 0, age 1, age 2 as well as during the first two years and the first three years
of life (Table 1). The nine sub-stocks exhibiting the synchronous decline in L
∞
described by
Trend 1 represent six species with different life-history characteristics and asynchronous
trends in fishing mortalities (Supplementary Fig. S3 and S5) ruling out the possibility that
non-random genetic selection is responsible for inducing cross-stock synchronicity in L
∞
.
Although a common trend in density was detected by DFA, it was not equally strongly
supported by all nine sub-stocks (Supplementary Fig. S4 and S5). No significant correlations
were observed between Trend 1 in L
∞
and the common trend in density (Supplementary
Table S4). Therefore, the TSR is a plausible and parsimonious explanation for the
synchronous reduction in L
∞
detected in the majority of North Sea sub-stocks and species
examined here.
The nine sub-stocks exhibiting a detectable degree of synchrony had fewer outliers and less
uncertainty in L
∞
estimates than the four sub-stocks that did not conform to Trend 1. They
included fast-growing/early-maturing species as well as slow-growing/late maturing ones and
their habitats encompassed pelagic, demersal and benthic regions. This suggests a uniformity
of the response to warming temperature which is consistent with current physiological
(Pörtner & Knust, 2007; Forster et al., 2011; Scott & Johnston, 2012) and ecological
(Daufresne et al., 2009; Gardner et al., 2011; Sheridan & Bickford, 2011; Ohlberger, 2013)
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understanding. It is not possible to infer direct causality from our analysis due to the
comparative shortness of the L
∞
time series used here (<40 years) and the intrinsically
“uncontrolled” nature of ecosystems. Support for inferring a causal relationship between
temperature and growth would be provided if ecosystems showing strong warming
consistently showed evidence of synchrony in growth rates across species while ecosystems
with little to no warming were asynchronous. For example, juvenile growth rates
(proportional to the VBGF parameter K) were correlated with temperature for six of eight
long-lived commercial fish species in the temperate southwestern Pacific (Thresher et al.,
2007). The intrinsically negative correlation between K and L
∞
(Pauly, 2010) (Supplementary
Fig. S2) suggests that there may have been a corresponding reduction in asymptotic body size
in the Pacific species, a hypothesis that is difficult to test due to their longevity. The two
studies, undertaken in temperate regions of the northern and southern hemisphere, confer a
degree of verisimilitude on the inference that temperature is responsible for imposing a
detectable, synchronous signal on temporal variation in individual growth rates of fish that is
consistent with TSR.
If the synchronous decline in L
∞
observed in several species were driven by temperature, as
the reasoning above suggests, then this study can be considered to support the prediction that
the future assemblage-averaged maximum body weight of species will be substantially
smaller (Cheung et al., 2013). This model-derived projection of future shrinkages (14-24%
smaller by 2050) reflects both temperature impacts on individual growth and biogeographic
shifts towards communities having a higher proportion of smaller-sized species. Considering
only impacts on individual growth resulted in 10% shrinkage (Cheung et al., in press). Our
study showed that a relatively small increase in temperature (<2 ºC) over a 40-year period
was concurrent with reductions in L
∞
that were variable across species (1% to 29%) but
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surprisingly large (average 16%) and comparable in scale to the Cheung et al. projection.
The speed and scale of Cheung et al.’s prediction about body sizes in future oceans appear
more reasonable than critics claim (Brander et al., in press). In our opinion the projections of
Cheung et al. have merit. In combination with our empirical observation of synchronous
growth trends in North Sea fishes, it is clear that a comprehensive analysis of available data
on individual growth is required.
Our results also provide empirical support for a recent simulation study showing that
shrinking body sizes impact fisheries yield (Audzijonyte et al., 2013). Comparing two years
before and after the decline in L
∞
(1978 and 1993, respectively) shows that, under several
assumptions, yield-per-recruit i.e., the catch in weight per recruit entering the fishery
(Beverton & Holt, 1957) for the affected North Sea stocks decreased by 3.1% to 48.1% with
an average reduction of 23.1% (Table 2). Despite the many assumptions required to estimate
yield-per-recruit, it is self-evident that smaller body sizes will decrease per capita estimates
of productivity. The magnitude of these declines seems both substantial and underappreciated
relative to the well-documented impacts of fishing over recent decades (Fernandes & Cook,
2013). Given that seasonal mean surface temperatures in the North Sea are predicted to
increase by 2.42-3.27ºC by the end of the century (MCCIP 2010) future synchronous
reductions in yield-per-recruit are probable.
Warming temperatures are generally associated with faster growth rates (higher K) for
temperate stocks (Thresher et al., 2007; Neuheimer & Grønkjaer, 2012). However, it has not
been fully appreciated that, by virtue of the negative relationship between L
∞
and K, the
downside of fast early growth is smaller adult body size. Consequences of smaller adult body
size include reduced per-capita reproductive rates (Rijnsdorp et al., 2010), decreased
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resilience (Hsieh et al., 2006)
and altered ecosystem function and services (Sheridan &
Bickford, 2011; Edeline et al., 2013). If individual growth rates change directionally in
response to warming then management strategies that assume productivity can be restored to
levels observed when temperatures were cooler must be re-considered.
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Acknowledgements
Funding support was provided by Marine Scotland – Science. C. Millar and S. Palmer are
thanked for their help. The authors declare no conflict of interest.
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multivariate time series using dynamic factor analysis. Environmetrics, 14, 665–685.
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Supporting Information legends
Table S1. Data availability, distribution and life history traits of the species considered in the
analysis. Mean length-at-age 1 was calculated from the age-length keys obtained from the
DATRAS database (http://datras.ices.dk/Home/Default.aspx), except for plaice and sole
which calculated length-at-age 1 using the von Bertalanffy equation. A50 (age at 50%
maturity) values were averaged across time series and were estimated by fitting maturity
ogives to sex maturity age-length keys obtained from the DATRAS database except for
plaice where proportion of mature-at-age values were used. For sole, the value 2.5 was
chosen as A
50
is reached between age 2 and age 3. The selectivity (age classes targeted by the
fishery) values were obtained from ICES assessment working group reports and correspond
to the age ranges used to estimate the average fishing mortality (F). Main preys were
estimated from diet data given in Pinnegar et al. (2011) and Greenstreet (1996).
Table S2. Summary table of the cohorts considered as outliers for each sub-stock, with their
L
∞
values and associated standard errors (S.E.). Unrealistically high values of L
∞
reflect
growth trajectories that are more linear than asymptotic.
Table S3. Selection table of candidate models tested in the Dynamic Factor analysis
including log-likelihood, Akaike criterion (AIC) and the difference (∆
AIC
) between the AIC
of the considered model and the best candidate model (minimum AIC observed).
Table S4 Estimated correlations between Trend1 and the trend in density for the sub-stocks
related to Trend 1, with their corresponding P-values. The lag included in the estimation of
the density is indicated (see Methods). Significance was adjusted by a sequential Bonferroni
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correction: the ordered P-values were compared with the inequality, P
i
≤ α(1 + k − i)
-1
, where
α is the confidence level to test for significance (0.05), K is the number of correlation tests
carried out and i is the rank of the correlation considered. Correlations for which the
inequality is met are significant (*).
Figure S1. a: the ICES standard roundfish areas for the North Sea used for the International
Bottom Trawl Surveys. b: Overall average annual sea bottom temperature (thick continuous
line) between the average of roundfish areas 1 and 2 (lower continuous line) and the average
of roundfish areas 5 and 6 (upper continuous line). The two lower dashed lines correspond to
areas 1 and 2, the two upper dashed lines to areas 5 and 6.
Figure S2. Log-scaled relationships between the K and L
∞
parameters for the sub-stocks
considered in the analysis (triangles: cod, straight crosses: haddock, circles: whiting, squares:
herring, diagonal crosses: Norway pout, stars: sprat, F and M: female and male plaice, f and
m (in grey): female and male sole). Filled symbols stand for sub-stock in northern North Sea,
empty symbols for sub-stocks in the southern North Sea. Lines correspond to linear models
fitted to the data points.
Figure S3. Fishing mortality (filled circles) for the sub-stocks related to Trend 1 (fishing
mortality was assumed to be equal for both male and female sole South) plotted along the
fitted values from the best Dynamic Factor Analysis model (line) and their corresponding
95% confidence intervals (a: haddock North, b: Norway pout North, c: Sprat South, d: plaice
South, e: sole South, f: whiting North, g: whiting South, h: herring North).
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Figure S4. Abundance at age 1 indices (filled circles) used as a proxy for density for the sub-
stocks related to Trend 1 (for both plaice and sole sub-stocks the abundance index stands for
the males and females together as no sex-specific abundance index were available) plotted
along the fitted values from the best Dynamic Factor Analysis model (line) and their
corresponding 95% confidence intervals (a: haddock North, b: Norway pout North, c: Sprat
South, d: plaice South, e: sole South, f: whiting North, g: whiting South, h: herring North).
Figure S5. The common trends (black line) identified by the best-fitting Dynamic Factor
Analysis to describe temporal variation in fishing mortality model (panels a and c) and
density (panel e) for the eight sub-stocks that were positively related to Trend 1 (grey line)
and their corresponding factor loadings for each sub-stock (panels b, d and f respectively).
For fishing mortality, the best model identified by DFA included more than one trend
suggesting that there is no synchrony in the fishing mortality time series for these eight sub-
stocks. For density, although the best model identified by DFA included a single trend,
haddock North and sprat South did not conform to it while whiting North showed the highest
factor loadings of all sub-stocks, suggesting that the trend was mainly driven by this sub-
stock only.
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Tables
Table 1 Estimated correlations between sea bottom temperature SBT and Trend 1 and their
corresponding P-values. The time period included in the estimation of mean temperature is
indicated (see Methods). Significance was adjusted by a sequential Bonferroni correction: the
ordered P-values were compared with the inequality, P
i
≤ α(1 + k − i)
-1
, where α is the
confidence level to test for significance (0.05), K is the number of correlation tests carried out
and i is the rank of the correlation considered. Correlations for which the inequality is met are
significant (*).
Time
period
Correlation
p-value α(1 + k − i)
-1
0 to 2 years -0.54 0.00064 0.010*
0 to 1 years -0.49 0.00182 0.013*
2 years
-
0.49
0.00200
0.017*
1 year
-
0.45
0.00510
0.025*
0 years -0.43 0.00640 0.050*
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Table 2 Yield-per-recruit (YPR) values (kg) prior (1978) and after (1993) the observed
decline in L
∞
, with corresponding individual yield loss in value (kg) and percentage. 1977
and 1997 were years in which the standardized common Trend 1 reached its maximum and
minimum values prior and after the decline in L
∞
. For sole and plaice the low natural
mortality estimates (0.1 at all ages) resulted in high YPR values for these two species
compared to other species.
Sub-stock YPR 1978 YPR 1997 Individual yield loss % loss
Haddock North
0.00473
0.00290
0.00183
38.7
Whiting North 0.00089 0.00086 0.00003 3.1
Whiting South 0.00116 0.00060 0.00056 48.1
Herring North 0.00514 0.00450 0.00063 12.3
N. Pout North
0.00171
0.00133
0.00038
22.2
Sprat South
0.00075
0.00072
0.00003
4.0
Sole male South 0.10458 0.08600 0.01858 17.8
Sole female South 0.14949 0.12571 0.02377 15.9
Plaice male South 0.12375 0.06664 0.05711 46.2
Average
23.1
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Figure legends
Figure 1 Standardized L
∞
time series for the thirteen sub-stocks considered in the analysis
(filled circles) with their 95% confidence intervals (vertical segments), along with the fitted
values from the selected Dynamic Factor Analysis model (line) and their corresponding
confidence intervals (shaded areas). a) cod North; b) cod South; c) haddock North; d) whiting
North; e) whiting South; f) herring North; g) herring South; h) Norway pout North; i) sprat
South; j) male sole South; k) female sole South; l) male plaice South; m) female plaice South.
Figure 2 Common trends given by the best candidate model (panels a and c) to describe L
∞
time variations over time and the corresponding factor loadings for the thirteen sub-stocks
(panels b and d). In panel a the grey line corresponds to the common trend given by a model
fitted with one common trend. In panel e the Trend 1 is plotted along with the sea bottom
temperature (grey line) averaged across the roundfish areas 1, 2, 5 and 6.
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Supporting Information
Table S1 Data availability, distribution and life history traits of the species considered in the analysis. Mean length-at-age 1 was calculated from
the age-length keys obtained from the DATRAS database (http://datras.ices.dk/Home/Default.aspx), except for plaice and sole which calculated
length-at-age 1 using the von Bertalanffy equation. A
50
(age at 50% maturity) values were averaged across time series and were estimated by
fitting maturity ogives to sex maturity age-length keys obtained from the DATRAS database except for plaice where proportion of mature-at-age
values were used. For sole, the value 2.5 was chosen as A
50
is reached between age 2 and age 3. The selectivity (age classes targeted by the
fishery) values were obtained from ICES assessment working group reports and correspond to the age ranges used to estimate the average
fishing mortality (F). Main preys were estimated from diet data given in Pinnegar et al. (2011) and Greenstreet (1996).
Cod Haddock Whiting Herring Norway
pout Sprat Plaice Sole
Time
period Time series 1971 - 2011 1970 - 2011 1970 - 2011 1970 - 2011 1972 - 2011 1972 - 2011 1970 - 2011 1970 - 2011
Region North * * * * *
South * * * * * *
Lifestyle
Demersal * * * *
Pelagic * *
Benthic * *
Body size Length-at-age 1
(mm) 229 194 181 156 125 98 124 103
Maturity A
50
3.2 2 1.3 2.6 1.1 1.0 2.87 2.5
Selectivity
F 2 - 4 2 - 4 2 - 5 2 - 6 1 - 2 1 - 2 2 - 6 2 - 6
Diet Main prey
Norway
pout
Sandeel
Sandeel
Benthos
Copepods
Sandeel Copepods Krill
Copepods
Copepods
Fish eggs Benthos Benthos
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Table S2. Summary table of the cohorts considered as outliers for each sub-stock, with their
L
∞
values and associated standard errors (S.E.). Unrealistically high values of L
∞
reflect
growth trajectories that are more linear than asymptotic.
Sub-stock Cohort L
∞
S.E.
Cod North 1984 144.15 22.21
1987 201.43 32.54
1991 358.03 36.63
1996 499.24 75.95
2000 214.24 30.58
2001 190.90 38.39
2002 176.35 33.65
2003 161.43 23.16
2004 409.59 325.06
2005 192.89 23.77
2006 1508.37
0.54
2007 775.07 978.26
2008 753.37 0.40
Cod South 1971 142.77 16.39
1979 360.00 55.28
1982 168.17 17.39
1984 165.66 21.66
1988 251.69 29.54
1989 171.30 45.43
1992 4597.72
2.05
1995 245.78 28.18
1997 1579.30
0.56
1998 152.11 18.73
2000 262.16 70.70
2001 1255.88
0.29
2002 144.82 17.50
2005 483.12 423.22
2006 2111.77
0.46
2007 1413.29
0.35
2008 79.45 27.70
Haddock North 1975 132.33 13.81
Whiting North 1980 705.58 0.63
Herring South 1989 85.97 11.99
1992 407.45 0.38
1997 166.15 13.69
2003 261.36 0.57
2008 271.79 0.28
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Norway pout North 1976 44.55 2.01
Sprat South 1981 161.84 0.70
1985 18.87 0.62
1995 63.44 0.76
1997 -322.35 1.11
Sole male South 2005 43.17 4.45
2006 81.56 1.37
Sole female South 2006 234.83 1.12
2007 195.84 0.69
Plaice male South 1992 93.06 11.72
2005 169.96 3.02
2006 96.24 1.98
2007 52.55 13.51
Plaice female South 1995 384.98 69.40
2004 530.15 2.45
2005 690.01 1.61
2006 566.30 0.80
2007 364.75 0.52
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Table S3. Selection table of candidate models tested in the Dynamic Factor analysis
including log-likelihood, Akaike criterion (AIC) and the difference (∆
AIC
) between the AIC of
the considered model and the best candidate model (minimum AIC observed).
Error covariance
matrix
Number of
trends
Log-
likelihood
AIC ∆
AIC
diagonal and equal 2 -542.67 1140.75
0.00
diagonal and unequal 3 -516.89 1144.33
3.59
diagonal and equal 3 -531.79 1144.58
3.84
diagonal and unequal 2 -533.06 1149.51
8.76
diagonal and equal 1 -563.05 1155.09
14.35
diagonal and equal 4 -525.32 1156.16
15.41
diagonal and unequal 4 -509.85 1156.34
15.59
diagonal and unequal 1 -554.61 1164.62
23.87
diagonal and unequal 5 -502.42 1166.14
25.40
diagonal and equal 5 -523.51 1175.69
34.94
diagonal and unequal 6 -500.78 1185.79
45.05
diagonal and equal 6 -523.25 1196.69
55.94
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Table S4 Estimated correlations between Trend1 and the trend in density for the sub-stocks
related to Trend 1, with their corresponding P-values. The lag included in the estimation of
the density is indicated (see Methods). Significance was adjusted by a sequential Bonferroni
correction: the ordered P-values were compared with the inequality, P
i
≤ α(1 + k − i)
-1
, where
α is the confidence level to test for significance (0.05), K is the number of correlation tests
carried out and i is the rank of the correlation considered. Correlations for which the
inequality is met are significant (*).
Lag Correlation
p-value α(1 + k − i)
-
1
2 years -0.31 0.06193 0.010
0 to 2 years -0.26 0.11790 0.013
1 year -0.23 0.15790 0.017
0 to 1 year -0.18 0.27780 0.025
0 year -0.15 0.36450 0.050
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Figure S1. a: the ICES standard roundfish areas for the North Sea used for the International Bottom Trawl Surveys. b: Overall average annual
sea bottom temperature (thick continuous line) between the average of roundfish areas 1 and 2 (lower continuous line) and the average of
roundfish areas 5 and 6 (upper continuous line). The two lower dashed lines correspond to areas 1 and 2, the two upper dashed lines to areas 5
and 6.
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Figure S2. Log-scaled relationships between the K and L
∞
parameters for the sub-stocks
considered in the analysis (triangles: cod, straight crosses: haddock, circles: whiting, squares:
herring, diagonal crosses: Norway pout, stars: sprat, F and M: female and male plaice, f and
m (in grey): female and male sole). Filled symbols stand for sub-stock in northern North Sea,
empty symbols for sub-stocks in the southern North Sea. Lines correspond to linear models
fitted to the data points.
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Figure S3. Fishing mortality (filled circles) for the sub-stocks related to Trend 1 (fishing
mortality was assumed to be equal for both male and female sole South) plotted along the
fitted values from the best Dynamic Factor Analysis model (line) and their corresponding
95% confidence intervals (a: haddock North, b: Norway pout North, c: Sprat South, d: plaice
South, e: sole South, f: whiting North, g: whiting South, h: herring North). For stocks
distributed across the northern and southern North Sea (whiting and herring), a survey-based
assessment (SURBA) model (Beare et al. 2005) was used to obtain local estimates of total
mortality in order to capture spatial gradients in fishing pressure. Assuming a constant natural
mortality, total mortality times series for these two stocks were used as proxies for fishing
mortalities. Fishing mortality as well as the stock weight-at-age and proportion of mature-at-
age required for the SURBA model were obtained from the International Council for the Sea
(http://www.ices.dk/) 2012 assessment reports for the Working Group on the Assessment of
Demersal Stocks in the North Sea and Skagerrak (WGNSSK) and the Herring Assessment
Working Group (HAWG). Assessment data were available from 1970 to 2011 for all species
apart from whiting, Norway pout and sprat which assessments began respectively in 1990,
1983 and 1991.
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Figure S4. Abundance at age 1 indices (filled circles) used as a proxy for density for the sub-
stocks related to Trend 1 (for both plaice and sole sub-stocks the abundance index stands for
the males and females together as no sex-specific abundance index were available) plotted
along the fitted values from the best Dynamic Factor Analysis model (line) and their
corresponding 95% confidence intervals (a: haddock North, b: Norway pout North, c: Sprat
South, d: plaice South, e: sole South, f: whiting North, g: whiting South, h: herring North).
For stocks distributed across the northern and southern North Sea (whiting and herring), the
survey abundance at age 1 indices were split by area. For other sub-stocks, XSA abundance
at age 1 indices given in the International Council for the Sea (http://www.ices.dk/) 2012
assessment reports for the Working Group on the Assessment of Demersal Stocks in the
North Sea and Skagerrak (WGNSSK) and the Herring Assessment Working Group (HAWG)
were used. For Norway pout North and sole South, recruitment time series from the
assessment were used as no abundance at age 1 indices were available. Data were available
from 1970 to 2011 for all species apart from whiting, Norway pout and sprat for which
indices were available from 1990, 1983 and 1984 respectively.
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Figure S5. The common trends (black line) identified by the best-fitting Dynamic Factor
Analysis to describe temporal variation in fishing mortality model (panels a and c) and
density (panel e) for the eight sub-stocks that were positively related to Trend 1 (grey line)
and their corresponding factor loadings for each sub-stock (panels b, d and f respectively).
For fishing mortality, the best model identified by DFA included more than one trend
suggesting that there is no synchrony in the fishing mortality time series for these eight sub-
stocks. For density, although the best model identified by DFA included a single trend,
haddock North and sprat South did not conform to it while whiting North showed the highest
factor loadings of all sub-stocks, suggesting that the trend was mainly driven by this sub-
stock only.
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Supporting References
Beare D, Needle C, Burns F, Reid D (2005) Using survey data independently from
commercial data in stock assessment: an example using haddock in ICES Division VIa.
ICES Journal of Marine Science, 62, 996–1005.
Greenstreet SPR (1996) Estimation of the daily consumption of food by fish in the North Sea
in each quarter of the year. Scottish Fisheries Research Report No. 55.
ICES (2009) Report of the Working Group on the Assessment of Demersal Stocks in the
North Sea and Skagerrak (WGNSSK). ICES CM 2009/ACOM: 10. 1028 pp.
ICES (2009) Report of the Herring Assessment Working Group for the Area South of 62 N
(HAWG). ICES CM 2009/ACOM: 03. 638 pp.
Pinnegar JK, Platts M. (2011) DAPSTOM - An Integrated Database & Portal of Fish
Stomach Records. Version 3.6. Centre for Environment, Fisheries & Aquaculture
Science, Lowestoft, UK. Phase 3, Final Report, July 2011, 35pp.
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