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Functional polymorphisms in NFκB1/IκBα predict risks of chronic obstructive pulmonary disease and lung cancer in Chinese

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  • the third affliated hospital of Guangzhou Medical University

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Lung inflammation is the major pathogenetic feature for both chronic obstructive pulmonary disease (COPD) and lung cancer. The nuclear factor-kappa B (NFκB) and its inhibitor (IκB) play crucial roles in inflammatory. Here, we tested the hypothesis that single nucleotide polymorphisms (SNPs) in NFκB/IκB confer consistent risks for COPD and lung cancer. Four putative functional SNPs (NFκB1: -94del>insATTG; NFκB2: -2966G>A; IκBα: -826C>T, 2758G>A) were analyzed in southern and validated in eastern Chineses to test their associations with COPD risk in 1,511 COPD patients and 1,677 normal lung function controls, as well as lung cancer risk in 1,559 lung cancer cases and 1,679 cancer-free controls. We found that the -94ins ATTG variants (ins/del + ins/ins) in NFκB1 conferred an increased risk of COPD (OR 1.27, 95 % CI 1.06-1.52) and promoted COPD progression by accelerating annual FEV1 decline (P = 0.015). The 2758AA variant in IκBα had an increased risk of lung cancer (OR 1.53, 95 % CI 1.30-1.80) by decreasing IκBα expression due to the modulation of microRNA hsa-miR-449a but not hsa-miR-34b. Furthermore, both adverse genotypes exerted effect on increasing lung cancer risk in individuals with pre-existing COPD, while the -94del>insATTG did not in those without pre-existing COPD. However, no significant association with COPD or lung cancer was observed for -2966G>A and -826C>T. Our data suggested a common susceptible mechanism of inflammation in lung induced by genetic variants in NFκB1 (-94del>ins ATTG) or IκBα (2758G>A) to predict risk of COPD or lung cancer.
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1 23
Human Genetics
ISSN 0340-6717
Volume 132
Number 4
Hum Genet (2013) 132:451-460
DOI 10.1007/s00439-013-1264-9
Functional polymorphisms in NFκB1/IκBα
predict risks of chronic obstructive
pulmonary disease and lung cancer in
Chinese
Dongsheng Huang, Lei Yang, Yehua
Liu, Yumin Zhou, Yuan Guo, Mingan
Pan, Yunnan Wang, Yigang Tan, Haibo
Zhong, Min Hu, Wenju Lu, et al.
1 23
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ORIGINAL INVESTIGATION
Functional polymorphisms in NFjB1/IjBapredict risks
of chronic obstructive pulmonary disease and lung cancer
in Chinese
Dongsheng Huang Lei Yang Yehua Liu Yumin Zhou Yuan Guo Mingan Pan
Yunnan Wang Yigang Tan Haibo Zhong Min Hu Wenju Lu Weidong Ji
Jian Wang Pixin Ran Nanshan Zhong Yifeng Zhou Jiachun Lu
Received: 20 September 2012 / Accepted: 3 January 2013 / Published online: 16 January 2013
ÓSpringer-Verlag Berlin Heidelberg 2013
Abstract Lung inflammation is the major pathogenetic
feature for both chronic obstructive pulmonary disease
(COPD) and lung cancer. The nuclear factor-kappa B
(NFjB) and its inhibitor (IjB) play crucial roles in
inflammatory. Here, we tested the hypothesis that single
nucleotide polymorphisms (SNPs) in NFjB/IjBconfer
consistent risks for COPD and lung cancer. Four putative
functional SNPs (NFjB1:-94del[insATTG; NFjB2:
-2966G[A; IjBa:-826C[T, 2758G[A) were analyzed
in southern and validated in eastern Chineses to test their
associations with COPD risk in 1,511 COPD patients and
1,677 normal lung function controls, as well as lung cancer
risk in 1,559 lung cancer cases and 1,679 cancer-free
controls. We found that the -94ins ATTG variants (ins/
del ?ins/ins) in NFjB1 conferred an increased risk of
COPD (OR 1.27, 95 % CI 1.06–1.52) and promoted COPD
progression by accelerating annual FEV1 decline
(P=0.015). The 2758AA variant in IjBahad an increased
risk of lung cancer (OR 1.53, 95 % CI 1.30–1.80) by
decreasing IjBaexpression due to the modulation of
microRNA hsa-miR-449a but not hsa-miR-34b. Further-
more, both adverse genotypes exerted effect on increasing
lung cancer risk in individuals with pre-existing COPD,
while the -94del[insATTG did not in those without pre-
existing COPD. However, no significant association with
COPD or lung cancer was observed for -2966G[A and
-826C[T. Our data suggested a common susceptible
mechanism of inflammation in lung induced by genetic
variants in NFjB1 (-94del[ins ATTG) or IjBa
(2758G[A) to predict risk of COPD or lung cancer.
D. Huang, L. Yang and Y. Liu contributed equally to this work.
Electronic supplementary material The online version of this
article (doi:10.1007/s00439-013-1264-9) contains supplementary
material, which is available to authorized users.
D. Huang L. Yang Y. Liu W. Ji J. Lu (&)
School of Public Health, The Institute for Chemical
Carcinogenesis, The State Key Lab of Respiratory Disease,
Guangzhou Medical University, 195 Dongfengxi Road,
Guangzhou 510182, China
e-mail: jcLu@gzhmc.edu.cn
D. Huang Y. Wang Y. Tan
Department of Respiratory Medicine, Guangzhou Chest
Hospital, Guangzhou, Guangdong, China
Y. Zhou W. Lu J. Wang P. Ran N. Zhong
Guangzhou Institute of Respiratory Diseases, The First Affiliated
Hospital, The State Key Lab of Respiratory Disease, Guangzhou
Medical University, Guangzhou, Guangdong, China
Y. Guo
The Third Affiliated Hospital of Guangzhou Medical University,
Guangzhou, Guangdong, China
M. Pan
Department of Respiratory Medicine, The Third Affiliated
Hospital of Sun Yat-sen University, Guangzhou,
Guangdong, China
H. Zhong
Department of Respiratory Medicine, Guangzhou Red Cross
Hospital, Guangzhou, Guangdong, China
M. Hu Y. Zhou
Soochow University Laboratory of Cancer Molecular Genetics,
Medical College of Soochow University, Suzhou 215123, China
123
Hum Genet (2013) 132:451–460
DOI 10.1007/s00439-013-1264-9
Author's personal copy
Introduction
Chronic obstructive pulmonary disease (COPD) and lung
cancer, two major smoking-related diseases, are the leading
causes of morbidity and mortality in China and worldwide
(Ferlay et al. 2010). Tobacco smoking is the most important
risk factor of COPD and lung cancer (Zhang and Cai 2003;
Zhong et al. 2007). Smoking can induce inflammatory
response in the airways, which play decisive roles in the
developments of both COPD and lung cancer (Grivennikov
et al. 2010; Lee et al. 2012). Moreover, patients with COPD
develop a greater degree of inflammation and thus provide
protumorigenic effects in lung (Hogg et al. 2004), and it has
been reported that COPD patients would develop lung cancer
with a high incidence rate of 16.7 cases per 1,000 person-
years (de Torres et al. 2011). COPD and lung cancer are both
inheritable (Chen 1999; Lichtenstein et al. 2000), therefore,
to reveal the common genetic susceptible factors of them
would be useful for prevention of both diseases, especially
for preventing the COPD patients to develop lung cancer.
As a crucial inflammatory mediator, nuclear factor
kappa-B (NFjB) and its endogenous inhibitors NFjBI (IjB)
are recognized as molecular link between COPD and lung
cancer (Garcia-Rio et al. 2010; Petrescu et al. 2010; Tanni
et al. 2010). Many signal transduction pathways, originating
from a wide variety of cellular stimuli, converge on the
NFjB/IjB complex in the bronchial epithelium, inflamma-
tory cells, premalignant lesions of the bronchial epithelium
and neoplastic cells (Karin 2009); and subsequent activation
of NFjB might cause chronic inflammation in the lower
airways that further promote the developments of COPD and
lung cancer. Furthermore, NFjB mediates tumor-promoting
inflammation during every stages of carcinogenesis, includ-
ing initiation, promotion, malignant conversion, invasion and
metastasis (Chaturvedi et al. 2011).
NFjB1 and NFjB2 are two major forms of NFjB
family in human (Chen et al. 1999), they can be inactivated
by the most common protein of IjB family-NFkB inhibitor
a(IjBa) (Hayden et al. 2006). Previous studies have
identified several single nucleotide polymorphisms (SNPs)
in NFjB1/NFjB2 and IjBato be associated with various
diseases including inflammatory disorders and cancer (He
et al. 2009; Karban et al. 2004; Song et al. 2011). However,
the pathophysiological effects of these SNPs on chronic
pulmonary diseases are unclear. We hypothesized that the
SNPs in NFjB/IjBagenes may influence the development
of COPD and lung cancer.
In this study, we tested the associations between four
putative functional SNPs (-94del[ins ATTG in NFjB1;
-2966G[AinNFjB2;-826C[T and 2758G[AinIjBa)
and COPD risk in a total of 1,511 COPD patients and 1,677
normal lung function controls, as well as lung cancer risk
with totally 1,559 lung cancer cases and 1,679 cancer-free
controls. We further performed a series of biological assays
to identify the biological effects of these polymorphisms.
Methods
Study subjects
Retrospective case–control studies were conducted for
COPD and lung cancer in two stages. The discovery set
included 1,025 COPD patients and 1,061 normal lung
function controls (Yang et al. 2012b), as well as 1,056 lung
cancer cases and 1,056 cancer-free controls of southern
Chinese (Liu et al. 2012; Lu et al. 2011; Yang et al. 2012a).
The validation set comprised 486 COPD patients and 616
normal controls, as well as 503 lung cancer cases and 623
healthy controls (Liu et al. 2012; Lu et al. 2011; Yang et al.
2012a). The detailed information of subjects’ recruitment
was presented in Electronic Supplementary Material.
Definition of COPD and its severity stage were according
to the global initiative for chronic obstructive lung disease
(Rabe et al. 2007). Individual’s demographic characters
and surrounding variables were obtained during an inter-
view after a written informed consent was signed. The
definitions of variables such as pre-existing COPD were
described in Electronic Supplementary Material and
elsewheres (Liu et al. 2012; Lu et al. 2011; Yang et al.
2012a). Demographic and selected variables of study sub-
jects were presented in Supplementary Table S1, S2. Fur-
thermore, all subjects that we recruited in previous studies
(Buist et al. 2007; Zhong et al. 2007; Zhou et al. 2010) with
at least 4 years spirometric follow-up data between 2002
and 2010 were selected for further phenotype analysis (i.e.,
116 COPD patients and 357 controls). The study was
approved by the institutional review boards of Guangzhou
Medical University and Soochow University.
SNP selection
Several SNPs located in NFjBor IjBagene have been
identified in previous studies. Among them, four polymor-
phisms [i.e., -94del[ins ATTG (rs28362491) of NFjB1;
-2966G[A (rs12769316) of NFjB2;-826C[T (rs2233406)
and 2758G[A(rs696)ofIjBa] were putatively functional and
reported to be associated with various human diseases (He
et al. 2009;Hungetal.2010; Marco s et al. 2009; Sampath et al.
2011;Songetal.2011; Zhang et al. 2009). Therefore, we
selected these four SNPs in our study.
Genotype and phenotype detection
The Taqman allelic discrimination assay was used to detect
the genotypes of -94del[ins ATTG (rs28362491) of
452 Hum Genet (2013) 132:451–460
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NFjB1;-2966G[A (rs12769316) of NFjB2;-826C[T
(rs2233406) and 2758G[A (rs696) of IjBa. Primers and
probes were designed by using Primer Express 3.0
(Applied Biosystems, Foster City, CA, USA) and synthe-
sized by Shanghai GeneCore Biotechnologies (Shanghai,
China) as shown in Supplementary Table S3. The PCR was
performed in the ABI PRISM 7900 Sequence Detection
Systems (Applied Biosystems) and the genotypes were
automatically determined by Sequence Detection Systems
software 2.0.1 (Applied Biosystems; Supplementary Figure
S1). To confirm the genotyping results, we randomly
selected 10 % samples to repeat by Taqman assay and 60
samples to re-sequence, as expected, the results were all
100 % concordant (Supplementary Figure S1).
Because the biological effect of the -94del[ins ATTG
variants has been identified (Karban et al. 2004), we
focused on assaying the effect of 2758G[A polymorphism.
The IjBaexpression level was detected in mRNA level by
real-time PCR, in protein level by western blotting like
described previously (Lu et al. 2011). We also performed
immunohistochemistry to detect the IjBaexpression
in situ. The detail protocols were described in Electronic
Supplementary Material.
RNA interference and luciferase assays
The protocol for construction of two luciferase reporter
genes comprising the 30-UTR of IjBawith different
2758G or A allele was presented in Electronic Supple-
mentary Material. The IjBain vitro luciferase assays
were performed first without any microRNA treatment
(Lu et al. 2011). Because the bioinformatics analysis
showed that the 2758G[A would change the binding of
the microRNA miR-449a and miR-34b, we added the
RNA interference assay to show their effect interacted
with the SNP. The mimics and inhibitors of miR-449a and
miR-34b synthesized by GenePharma Co. (Shanghai,
China) were co-transferred with the luciferase reporters to
show the effect of microRNA on IjBareporter genes
in vitro. A549 (2758GG genotype) and NCI-520 (2758AG
genotype) were seeded into 24-well plates at
1910
5
cells/well and cultured at 37 °Cin5%CO
2
for
24 h. The cells were then transiently transfected with
1.5 lg of reporter plasmids (G or A allele) alone or co-
transfected with or without microRNA mimics or inhibi-
tors using Lipofectamine 2000 according to the protocol
(Invitrogen, Carlsbad, CA, USA). The activities of
reporter genes with renilla luciferase and the internal
standard firefly luciferase were quantified by a Dual-
Luciferase Reporter Assay System (Promega, Madison,
WI, USA). Independent triplicate experiments were done
for each plasmid construct. We further detect the effect of
the operant microRNA on IjBaexpression with real-time
PCR analysis in A549 (2758GG genotype) and NCI-520
(2758AG genotype).
Statistical analysis
Differences in the distributions of demographic character-
istics and genotypes between cases and controls were
evaluated using the Chi-square test or the Student’s ttest.
The association between each SNP and diseases risk was
estimated using an unconditional logistic regression model
with adjustments for surrounding factors. A multiplicative
interaction was suggested to detect the possible gene–
environment interaction (Lu et al. 2011). Homogeneity test
was performed with Breslow–Day test. The statistical
power was calculated by the PS Software (Dupont and
Plummer 1990). The One-way ANOVA test, Student’s
ttest and linear regression analysis were used to assay the
deviation of annual decline of pre-bronchodilator FEV1,
which refers to the volume exhaled during the first second
of a forced expiratory maneuver started from the level of
total lung capacity and IjBaexpression in groups with
different genotypes. The Student’s ttest was also used to
examine the difference in levels of luciferase reporter
genes expression between different constructs. All tests
were two-sided by using the SAS software (version 9.3;
SAS Institute, Cary, NC, USA). P\0.05 was considered
statistically significant.
Results
NFjB/IjBagenotypes and COPD or lung cancer risk
As summarized in Table 1, the observed genotype fre-
quencies of all SNPs were in agreement with the Hardy–
Weinberg equilibrium in controls (P[0.05 for all). In
discovery set, according to criteria of the smallest AIC
value, the -94ins variant genotypes (ins/ins ?ins/del) of
NFjB1 conferred a 1.23-fold increased risk of COPD
compared with del/del genotype (OR 1.23; 95 % CI
1.03–1.54; P=0.037) in a dominant genetic model. And
the 2758AA genotype of IjBaconferred a 1.49-fold
increased risk of lung cancer compared with 2758G
(GG ?GA) genotypes (OR 1.49; 95 % CI 1.22–1.82;
P=9.5 910
-5
) under a recessive genetic model. How-
ever, no other significant association between these poly-
morphisms and the risk of either COPD or lung cancer was
observed. The results in validation set confirmed the above
findings, the -94ins variant genotypes conferred a 1.33-
fold increased risk of COPD compared with del/del geno-
type (OR 1.33; 95 % CI 1.04–1.81; P=0.047). Mean-
while, the 2758AA adverse genotype had a 1.61-fold risk of
lung cancer compared to 2758G genotypes (OR 1.61; 95 %
Hum Genet (2013) 132:451–460 453
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Table 1 Associations between genotypes in NFjB1/NFjB2 and IjBagenes and COPD as well as lung cancer risk
Genotypes COPD case–control study Lung cancer case–control study
Discovery set (Southern Chinese) Validation set (Eastern Chinese) Discovery set (Southern Chinese) Validation set (Eastern Chinese)
Cases n(%) Controls n(%) Adjusted OR (95 % CI)
a
Cases n(%) Controls n(%) OR (95 % CI)
a
Cases n(%) Controls n(%) Adjusted OR (95 % CI)
a
Cases n(%) Controls n(%) OR (95 % CI)
a
Total no. of subjects 1,025 1,061 486 616 1,056 1,056 503 623
NFjB1 -94del [insATTG
del/del 170 (16.6) 214 (20.2) 1.00 (ref) 82 (16.9) 133 (21.6) 1.00 (ref) 225 (21.3) 210 (19.9) 1.00 (ref) 104 (20.7) 145 (23.3) 1.00 (ref)
ins/del 454 (44.3) 496 (46.7) 1.13 (0.89–1.44) 214 (44.0) 261 (42.4) 1.33 (0.96–1.86) 459 (43.4) 491 (46.5) 0.87 (0.69–1.10) 230 (45.7) 289 (46.4) 1.08
(0.79–1.47)
ins/ins 401 (39.1) 351 (33.1) 1.38 (1.071.77) 190 (39.1) 222 (36.0) 1.39 (1.00–1.95) 372 (35.5) 355 (33.6) 0.97 (0.77–1.24) 169 (33.6) 189 (30.3) 1.25
(0.90–1.73)
Trend test Pvalue 0.006 0.095 0.982 0.173
ins/del ?ins/ins 855 (83.4) 847 (79.8) 1.23 (1.03–1.54) 404 (83.1) 483 (78.4) 1.33 (1.04–1.81) 831 (78.7) 846 (80.1) 0.92 (0.74–1.13) 404 (83.1) 483 (78.4) 1.14
(0.86–1.52)
NFjB2-2966G[A
GG 412 (40.2) 451 (42.5) 1.00 (ref) 440 (41.7) 459 (43.5) 1.00 (ref)
AG 480 (46.8) 475 (44.8) 1.11 (0.91–1.34) 494 (46.8) 481 (45.5) 1.11 (0.91–1.34)
AA 133 (13.0) 135 (12.7) 1.08 (0.79–1.48) 122 (11.5) 116 (11.0) 1.08 (0.79–1.48)
Trend test Pvalue 0.687 0.798
IjBa-826T[C
TT 788 (76.9) 822 (77.5) 1.00 (ref) 815 (77.2) 808 (76.5) 1.00 (ref)
TC 210 (20.5) 225 (21.2) 0.99 (0.80–1.23) 217 (20.5) 229 (21.7) 0.95 (0.77–1.17)
CC 27 (2.6) 14 (1.32) 1.76 (0.90–3.47) 24 (2.3) 19 (1.8) 1.26 (0.69–2.33)
Trend test Pvalue 0.227 0.976
IjBa2758G[A
GG 311 (30.3) 305 (28.8) 1.00 (ref) 150 (30.9) 171 (27.8) 1.00 (ref.) (ref.) 294 (27.9) 293 (27.8) 1.00 (ref) 132 (26.2) 206 (33.1) 1.00 (ref.) (ref.)
AG 503 (49.1) 532 (50.1) 0.93 (0.76–1.14) 244 (50.2) 324 (52.6) 0.88 (0.66–1.16) 466 (44.1) 544 (51.5) 0.86 (0.70–1.06) 226 (44.9) 290 (46.5) 1.23
(0.93–1.63)
AA 211 (20.6) 224 (21.1) 0.91 (0.71–1.17) 92 (18.9) 121 (19.6) 0.87 (0.61–1.24) 296 (28.0) 219 (20.7) 1.36 (1.071.72) 145 (28.8) 127 (20.4) 1.82 (1.31-2.53)
Trend test Pvalue 0.448 0.350 0.018 4.0 310
25
GG ?AG 814 (79.4) 837 (78.9) 1.00 (ref) 394 (81.1) 495 (80.4) 1.00 (ref) 760 (72.0) 837 (79.3) 1.00 (ref) 358 (71.2) 496 (79.6) 1.00 (ref)
AA 211 (20.6) 224 (21.1) 0.96 (0.77–1.19) 92 (18.9) 121 (19.6) 0.95 (0.70–1.29) 296 (28.0) 219 (20.7) 1.49 (1.22–1.82) 145 (28.8) 127 (20.4) 1.61
(1.22–2.12)
Significant statistics with tested Pvalues less than 0.05 were presented in bold
a
Adjusted in a logistic regression model that included age, sex, smoking status and drinking status
454 Hum Genet (2013) 132:451–460
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CI 1.22–2.12; P=0.001). Because the associations of
above adverse genotypes in the two datasets were homo-
geneous (P=0.734 for -94del[ins ATTG, P=0.726 for
2758G[A), we then merged the two sets, the -94ins variant
genotypes of NFjB1 conferred a 1.27-fold increased risk of
COPD (OR 1.27; 95 % CI 1.06–1.52; P=0.009; Supple-
mentary Figure S2), while the 2758AA genotype had a
1.53-fold increased risk of lung cancer (OR 1.53, 95 % CI
1.30–1.80; P=3.0 910
-4
; Supplementary Figure S3).
We further analyze the effect of pre-existing COPD
condition on the risk genotypes for lung cancer because
COPD promotes inflammation and thus provide protu-
morigenic effects (Hogg et al. 2004). Interestingly, both the
adverse genotypes were significant in those subjects with
pre-existing COPD (P\0.05 for all), while the -94ins
variant genotypes was not in those without pre-existing
COPD (Table 2). When combined the number of risk
genotypes of these two SNPs, we found that the subjects
carrying two risk genotypes with pre-existing COPD had a
higher risk of lung cancer (OR 3.15, 95 % CI 1.48–6.70)
than those without pre-existing COPD (OR 1.43, 95 % CI
1.12–1.48) on a borderline statistically significance (Bre-
slow–Day test: P=0.087, Table 2). In the stratification
analysis, we did not observe any significant differences for
associations between the -94del[ins ATTG or 2758G[A
polymorphism and risk of COPD or lung cancer in each
stratum (Supplementary Figure S2, S3; homogeneity test
P[0.05 for all), and no significant interaction between
these risk genotypes and surrounding factors on both dis-
eases risk. In addition, there was no significant association
between the risk genotypes and smoking status as well as
pack years smoked (P[0.05, data not shown).
NFjB1 genotypes and pulmonary functions
Only the effect of -94del[ins ATTG on pulmonary function
was presented because no significant association was
observed in other SNPs for pulmonary function. In subjects
with pulmonary function follow-up data, there was a signi-
ficant decreasing trend of annual average decline of pre-
bronchodilator FEV1 in COPD patients according to -94ins
ATTG allele-dependent manner (-94ins/ins ATTG: n=62,
-0.126 ±0.113 L, -94ins/del ATTG: n=42, -0.091 ±
0.083 L, -94del/del ATTG: n=12, -0.040 ±0.036 L,
ANOVA test P=0.015, linear regression test P=0.017),
but not in controls (Fig. 1). And the -94del[insATTG
genotypes were significantly correlated with COPD Gold
stages (P=0.048). Furthermore, as shown in Supplemen-
tary Table S4, sex, smoking status and pack-year smoked
were correlated with the annual decline of pre-bronchodilator
FEV1 in both COPD cases and controls.
IjBagenotypes and its expression
As shown in Fig. 2, the mRNA levels of IjBawere much
lower in lung cancer tissues compared to their adjacent
Table 2 Effect of NFjB1/IjBapolymorphisms on risk of lung cancer with or without pre-existing COPD
Genotypes Non pre-existing COPD individuals Pre-existing COPD individuals Homogeneity test
Pvalue
Lung cancers n(%) Controls n(%) OR (95 % CI)
a
Lung cancers n(%) Controls n(%) OR (95 % CI)
a
Total no. of subjects 1,342 1,510 217 169
NFjB1 -94del[insATTG
del/del 289 (21.6) 309 (20.5) 1.00 (ref.) 40 (18.4) 46 (27.2) 1.00 (ref.)
ins/del 599 (44.6) 653 (43.2) 1.05 (0.911.22) 90 (41.5) 77 (45.6) 0.86 (0.571.30) 0.267
ins/ins 454 (33.8) 548 (36.3) 0.90 (0.771.05) 87 (40.1) 46 (27.2) 1.80 (1.15–2.80) 0.003
del/del 289 (21.6) 309 (20.5) 1.00 (ref.) 40 (18.4) 46 (27.2) 1.00 (ref.)
ins/del ?ins/ins 1,053 (78.5) 1,201 (79.5) 0.93 (0.781.12) 177 (81.6) 123 (72.8) 1.69 (1.03–2.78) 0.030
IjBa2758G[A
GG?AG 968 (72.1) 1,202 (79.6) 1.00 (ref.) 150 (69.1) 131 (77.5) 1.00 (ref.)
AA 374 (27.9) 308 (20.4) 1.52 (1.28–1.80) 67 (30.9) 38 (22.5) 1.60 (1.00–2.58) 0.934
No. of the combined risk genotypes
b
0 210 (15.6) 251 (16.6) 1.00 (ref.) 26 (12.0) 33 (19.5) 1.00 (ref.)
1 837 (62.4) 1,009 (66.8) 0.98 (0.80–1.21) 138 (63.6) 111 (65.7) 1.60 (0.89–2.89) 0.132
2 295 (22.0) 250 (16.6) 1.43 (1.12–1.84) 53 (24.4) 25 (14.8) 3.15 (1.48-6.70) 0.087
Significant statistics with tested Pvalues less than 0.05 were presented in bold
a
Adjusted in a logistic regression model that included age, sex, smoking status and drinking status
b
Genotype combinations of the two polymorphisms in the NFjB1 and IjBa: ins variant genotypes (ins/del ?ins/ins) and 2758AA genotype are defined as risk
genotypes: i.e., the carriers of del/del and 2758GG/AG have zero risk genotype, the carriers of ins/del (ins/ins) and 2758GG/AG, or del/del and 2758AA have one
risk genotype; and the ins/del (ins/ins) and 2758AA carriers have two risk genotypes
Hum Genet (2013) 132:451–460 455
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normal tissues (P=0.032), and they were significantly
lower in cases carrying 2758AA genotype than in cases
with 2758G genotypes of both normal and cancer tissues
(P\0.05 for all). The IjBaprotein expression confirmed
the above findings as they were significantly decreased in
carriers of 2758AA genotype compared with those of
2758G genotypes (P\0.05 for all). Furthermore, the
immunohistochemical stain also shown that 2758AA
genotype exerted a significantly lower IjBaexpression
in situ than 2758G genotypes (Supplementary Figure S4;
P=0.045).
Luciferase activity
As shown in Fig. 3b, the transcription activity of the
reporter gene integrated the IjBa30-UTR with 2758A
allele was significantly lower than that with G allele both in
A549 cell and NCI-520 cell (Pvalue is 0.022, 0.036,
respectively). The miR-449a mimics could further reduce
the reporter genes’ activity with 2758A allele (P\0.05),
and the miR-449a inhibitor reversed and up-regulated
reporter genes’ activity (P\0.05). However, the miR-34b
failed to exert any effect on the reporter genes either with
2758A allele or G allele (P[0.05 for all). Furthermore,
the expressions of miR-449a were observed in A549 and
NCI-520 (Fig. 3c). As shown in Fig. 3d, the mimics of
miR-449a suppressed the mRNA expression of IjBaand
its inhibitors could reverse and up-regulate IjBa’s
expression only in NCI-520 with 2758AG genotype
(P\0.01). However, in A549 with 2758GG genotype, the
miR-449a mimics could significantly suppress IjBa, but
the miR-449a inhibitors did not significantly reverse the
IjBaexpression.
Fig. 1 Association between the NFjB1 -94del[ins ATTG poly-
morphism and the annual average decline of pre-bronchodilator
FEV1. aThe annual average decline of pre-bronchodilator FEV1 by
-94del[ins ATTG genotypes in COPD patients. bThe annual
average decline of pre-bronchodilator FEV1 by -94del[ins ATTG
genotypes in healthy controls. A significant decreased trend of annual
average decline of pre-bronchodilator FEV1 in COPD patients
according to -94ins ATTG allele-dependent manner (ANOVA test
P=0.015) but not in controls (ANOVA test P=0.139) was
observed
Fig. 2 Association between the 2758G[A genotypes and IjBa
expressions. aRelative mRNA levels of the IjBaexpression in lung
tissues by 2758G[A genotypes. bThe western blotting assay on
detecting IjBaprotein with b-actin as an internal reference. cThe
IjBaprotein expression by 2758G[A genotypes in lung tissues. Both
the mRNA and protein expressions of IjBawere significantly
decreased in carriers of 2758AA genotype than those of 2758G
genotypes in lung cancer tissues (ANOVA test P\0.05 for all) as
well as in adjacent normal tissues (ANOVA test P\0.05 for all)
456 Hum Genet (2013) 132:451–460
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Discussion
In this study, we found that the -94ins ATTG variants of
NFjB1 conferred an increased risk of COPD and accel-
erated COPD progression by making carriers more rapid
reduction in pulmonary function; and the 2758AA variant
of IjBacontributed an increased risk of lung cancer by
decreasing IjBaexpression in lung tissues under the
regulation of hsa-miR-449a but not hsa-miR-34b. Espe-
cially in individuals with pre-existing COPD, both
adverse genotypes exerted effect on increasing lung can-
cer risk while the -94del[insATTG did not in those
without pre-existing COPD. All these supported a com-
mon susceptible mechanism of inflammation in lung
induced by genetic variants in NFjB1 or IjBafor COPD
and lung cancer.
The NFjB1 and IjBaplay critical roles in multiple
human diseases by responding to the environmental stim-
ulus and regulating inflammatory responses, cell growth
and apoptosis (Escarcega 2010). Up expression or over
activation of NFjB1 that promotes exacerbation of
inflammation has been found in both COPD and lung
cancer (Brown et al. 2009; Tang et al. 2006), and NFjB1
also possibly predisposes those COPD patients to further
develop lung cancer. Meanwhile, IjBa, which functions to
suppress the effect of NFjB1, has been reported be inactive
or down-regulated during various stimuli induced NFjB
activation progresses (Abe et al. 2011; Kim et al. 2000),
and in consequence loss its protective role in the devel-
opment of human disease. Previous study has demonstrated
that the -94ins ATTG allele has an effect on increasing
expression of NFjB1 and in turn promoting inflammation
Fig. 3 Effects of the 2758G[A polymorphism and treatment with
microRNAs on reporter gene’s activity and IjBain different cell
lines. aSchematic of the reporter gene construct with a 296 bp 30-
UTR of IjBa(?1ntto?296 nt downstream to the translation stop
site TGA) including 2758G[A polymorphism and a putative target
site of miR-449a and miR-34b highly conserved in the IjBamRNA
30-UTR. bLuciferase expression of the two constructs in lung cancer
cells (A549 and NCI-520). The renilla luciferase activity of each
construct was normalized against the internal control of firefly
luciferase. cThe gene expressions of has-miR-449a in lung cell lines.
dThe differences of IjBamRNA level in A549 and NCI-520 with
different 2758G[A genotypes after the treatment of mimics or
inhibitors of miR-449a. Columns, mean from three independent
experiments; bars, SD; and Student’s ttest was used to test the
differences in the expression levels of different constructs as well as
IjBamRNA levels. The transcription activity of the reporter gene
integrated the IjBa30-UTR with 2758A allele was significantly lower
than that with G allele with a modulation by miR-449a
Hum Genet (2013) 132:451–460 457
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(Karban et al. 2004), so, it is conceivable that the -94ins
ATTG variant genotypes conferred an increased risk of
COPD and decreased pulmonary functions. Correspond-
ingly, the 2758G[A polymorphism exerted an effect on
decreasing IjBaexpression in lung tissues and might loss
its suppression on NFjB dependent inflammation, there-
fore, the 2758AA variants shared a consistent pro-inflam-
matory role with the -94ins ATTG variants, thus
contributed high risk to lung cancer. The in vitro assays
further revealed an adverse effect of 2758A allele on
IjBa’s expression, and the miR-449a could specially reg-
ulate the activities of reporter genes with 2758A but not G
allele. The stronger effect of miR-449a on modulating IjBa
in NCI-520 with 2758AG genotype than that of A549 with
2758AA genotype confirmed this finding. Interestingly,
high miR-449a levels have been found in lung cancer tis-
sues and cancer cells (Lize et al. 2010), further suggesting a
physical and endogenous function of the miR-449a on
regulating the effect of IjBa. Two reports of colorectal
cancer have showed significant associations of the
2758G[A polymorphism in southern Chinese and Swedish
population (Song et al. 2011; Zou et al. 2011). They were
consistent with our finding that the 2758G[A polymor-
phism increased the risk of lung cancer. Taken these
together, the genetic variations -94del[ins ATTG of
NFjB1 or 2758G[AofIjBathat involved in a common
mechanism as pro-inflammation may predispose a sus-
ceptibility to COPD or lung cancer. Additionally, the
genetic effect of above two risk genotypes was more evi-
dent in subjects with pre-existing COPD, indicating a
possibly high risk of lung cancer in COPD cases owing to
over-activated inflammation.
Many studies have reported the -94ins ATTG variant
genotypes conferred an increased risk of inflammatory
diseases (He et al. 2009; Karban et al. 2004). Here, we
consistently found -94ins ATTG variants were associated
with COPD risk and correlated with COPD stages by
causing more rapid reduction in pre-bronchodilator FEV1
in COPD cases. The reduction in FEV1 is a marker of
airflow obstruction and the FEV1 is used to assess the
severity of the airflow obstruction (Ferrer et al. 1997), so
the patients with -94ins ATTG genotypes got more serious
COPD stages. Our findings of the -94ins ATTG variants
significantly associated with FEV1 decline in COPD cases
but not in controls implies that the ATTG polymorphism
increases the inflammation may involve in the development
of COPD.
As a hospital-based case–control study, there were some
limitations in current study such as information bias.
However, with the fairly large sample size and two study
populations, we have achieved high statistical powers
(88.0 % for COPD, 99.7 % for lung cancer) and the
functional assays also confirmed the associations. In
addition, recent genome-wide association studies (GWAS)
identified several SNPs in Chromosome 4q24 to be sus-
ceptible loci for COPD or lung function (Castaldi et al.
2011; Repapi et al. 2010). The NFjB1 gene is also located
on 4q24. However, the GWAS did not report any loci in
NFjB1, this may be due to that the SNP (rs28362491) was
not included in the Affymetrix 6.0 genechip assay, and
there is no LD between the SNP and other SNPs of NFjB1
comprised in the gene chip. For 2758G[A (rs696), the
results from Chinese GWAS that we previously partici-
pated in (Hu et al. 2011) showed that the SNP is significant
associated with lung cancer risk (P=0.016) although it
does not meet the GWAS significant criteria (P\10
-7
).
Therefore, it appears that our finding is unlikely by chance.
In conclusion, in current study, we found significant
associations between NFjB1 and IjBapolymorphisms and
risk of COPD or lung cancer in Chinese. The findings were
consistent in COPD and lung cancer, because the -94ins
variants carriers with reduced expression of NF-jB had an
increased risk of COPD, and the carriers of 2758AA
genotype with decreased expression of IjB and conse-
quently less suppression of NF-jB were associated with an
increased risk of lung cancer. Our results suggested that the
genetic variation in genes encoding NF-jB/IjB may con-
tribute to the developments of both COPD and lung cancer
in Chinese people.
Acknowledgments This study was supported by the National Nat-
ural Scientific Foundation of China grants 30671813, 30872178,
81072366, 81273149 (Dr. J. Lu), and partly by 81170043 (Dr. P.Ran),
30872142 (Dr. W. Ji) and 81001278, 81171895 (Dr. Y. Zhou);
Guangdong Provincial High Level Experts Grants 2010-79 (Dr.
J. Lu); Guangdong Provincial Science and Technology Planning
Project Grant 2011B031800378 (Dr. D. Huang), Guangdong Provin-
cial Medical Scientific Research Grants A2012520 (Dr. D. Huang);
Guangzhou civic Science and Technology grant 2012-Y2-00029 (Dr.
B. Liu); Changjiang Scholars and Innovative Research Team in
University grant IRT0961 (Dr. J. Wang), Guangdong natural science
foundation team grant 10351012003000000 (Dr. W. Lu). We thank
Dr. Bohang Zeng, Dr. Yunnan Wang, Dr. Zhanhong Xie and Ms.
Wanmin Zeng for their assistance in recruiting the subjects; Hongjun
Zhao, Xiaoxuan Ling and Lin Liu for their laboratory assistance.
Conflict of interest The authors have declared no conflicts of
interest.
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... A report suggested that epigenetic deregulation of nAChR genes are strongly associated with genetic lung cancer susceptibility variants and a functional impact on tumorigenic potential [14] and have an important role in mediating the effect of nicotine on the dopaminergic pathway and dopamine release from limbic brain areas. Studies have shown that CHRNA3 associated with smoking addiction through the high expression in the key regions of brain [15]. Notably, rs6495309 in the promoter of the CHRNA3 gene was reported to affect the binding ability of the transcriptional factor Oct-1 that has been shown to repress gene transcription, resulting in alteration of CHRNA3 RNA expression, impacting the ability to enter into apoptosis, thereby influencing lung cancer risk [16,17]. ...
... Their study illustrated that individuals with CC/CT genotypes of SNP rs6495309 led to an increase in the risk of lung cancer and chronic obstructive pulmonary disease and poor prognosis. Moreover, there is a positive interaction between CC/CT genotypes and smoking behaviors to these diseases, while SNP rs1051730 was proved to have no effects on all on them [15]. However, we thought that there is no effects of SNP rs6495309, rs1948 and rs8040868 on the survival time of lung cancer and further research is necessary. ...
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CHRNA5/CHRNA3/CHRNB4 gene cluster is located on chromosome 15q25.1 and was reported to be associated with risk of lung cancer. So far, the effect of three single nucleotide polymorphisms rs6495309, rs8040868, rs1948 in this gene cluster was unclear about lung cancer risk. The aim of the present study was to evaluate the associations of rs6495309, rs8040868, rs1948 polymorphism, smoking exposure and the interaction with non-small cell lung cancer risk in Chinese population. In this hospital-based case-control study, 306 lung cancer patients and 306 cancerfree controls were interviewed to collect demographic data and exposure status of smoking, and then donate 2ml venous blood which was used to be genotyped by Taqman allelic discrimination method. Our study found that subjects carrying rs1948 CT genotype stated to be a risk factor in Chinese Han population (adjusted OR = 1.594, 95% CI = 1.066-2.383, P = 0.023) and in non-smoking population (adjusted OR = 1.896, 95%CI = 1.069-3.362, P = 0.029). rs8040868 CC genotype indicated a higher risk for lung cancer in non-smokers in a recessive model (adjusted OR = 2.496, 95%CI = 1.044-5.965, P = 0.040) and in age-based stratified analysis (age < = 60, adjusted OR = 4.213, 95%CI = 1.062-16.708, P = 0.041). All smoking interaction were positive in the multiplicative interaction of the SNPs and smoking status (-/+) compared with recessive model. Overall, these finding suggested that rs1948(C > T) and rs8040868(T > C) could be meaningful as genetic markers for lung cancer risk in Chinese Han population.
... The studied population has been previously described. 20,22,23 In the discovery set, 697 patients of southern Chinese were recruited from three communities (Liwan, Xicun and Zhanqian communities) in Guangzhou city based on the cross-sectional surveys of COPD on 6000 individuals between February 2002 and June 2008, 328 patients were recruited from municipal hospitals in Guangzhou (the Guangzhou Chest Hospital, The third Affiliated Hospital of Guangzhou Medical University, the Third Affiliated Hospital of Sun Yat-sen University) between December 2007 and June 2010. A total of 1061 normal lung function controls (FEV 1 / FVC > 70%) were randomly picked from the pool of 6000 individuals. ...
... The demographic distributions of the two studied populations have been previously described 20,22,23 and are showed in Table 1. The genotype frequencies of the studied MAP2K7 rare variants and their associations with COPD risk are summarized in Table 2. ...
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Background and objective: A wide range of common loci have been extensively screened and evaluated for their associations with various complex diseases; however, the relevance of rare variants causing missense substitutions in the protein-coding genes in human diseases is still poorly understood. Methods: In this study, we conducted a two-stage retrospective study of a total of 1791 patients with COPD and 1940 controls in southern and eastern Chinese to test relevancies of five rare variants (i.e. p.Glu116Lys, p.Asn118Ser, p.Arg138Cys, p.Ala195Thr and p.Leu259Phe) of human mitogen-activated protein kinase kinase 7 (MAP2K7) to COPD susceptibility. The effects of these loci on lung function were further estimated. Results: The p.Glu116Lys rare variant had significant associations with COPD risk. Compared to individuals with Glu/Glu wild-genotype, those with 116Lys rare variants (Lys/Glu+Lys/Lys) had an increased risk of COPD (OR = 3.83, 95% CI: 2.64-5.56; P = 1.45 × 10(-12) ). Meanwhile, the carriers with 116Lys rare variants (Lys/Glu+Lys/Lys) had lower pre-forced expiratory volume in 1 s (pre-FEV1 : 1.74 ± 0.70 vs 2.00 ± 0.68; P = 3.97 × 10(-5) ) and lower pre-FEV1 to pre-forced vital capacity ratio (pre-FEV1 /FVC: 0.68 ± 0.14 vs 0.75 ± 0.12; P = 2.40 × 10(-10) ) than those with Glu/Glu genotype. However, for other rare variants, no significant association with either COPD risk or lung function was observed. Conclusion: Our data strongly suggest that the p.Glu116Lys rare variant in MAP2K7 predisposes its carriers to develop COPD, which would provide a useful genetic biomarker for COPD susceptibility in Chinese.
... In this study, ins/ins, ins/del and del/del were detected from AECOPD patients the majority of which carried ins/ins and ins/del. These results were consistent with studies by Huang and colleagues (11) who found that the lung function of the Chinese Han population with -94ins/insATTG genes or ins/delATTG genes showed reduced lung function (FEV1) that those carrying del/delATTG genes. The results of this study indicated that the COPD patients with -94ins/ insATTG or -94ins/delATTG gene sequences had more severe disease with longer hospital stays. ...
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Background: To clarify the correlation between the NF-κB1 gene initiation sequence -94ins/delATTG polymorphisms and the acute exacerbation of chronic obstructive pulmonary disease (AECOPD). Methods: Blood samples of 260 AECOPD patients were collected from September 2013 to September 2015 in the department of respiratory medicine, the Third Affiliated Hospital of Southern Medical University. Blood samples of 260 healthy subjects were collected as a control group. DNA was extracted using genomic DNA extraction kits and analyzed on a DNA quantitative analyzer. Data analysis was performed using Rotor-Gene (60001.7) to determine genotypes. SPSS20.0 was used to compare -94ins/delATTG polymorphisms between patients and healthy subjects. The relationship between the promoter sequence -94ins/delATTG of NF-κB1 genotypes and AECOPD were further analyzed. Results: We detected ins/ins, insertion or deletion (ins/del) and del/del genotypes from both the AECOPD and healthy control groups. The distribution of the three genotypes were consistent with the Hardy-Weinberg equilibrium law. The composition ratios of ins/ins, ins/del, del/del genotype distributions differed between AECOPD and control groups (P<0.05). The differences in ins/ins, ins/del and del/del genotype distributions between the two groups also significantly differed (P<0.05). The distribution of allele frequencies was comparable between the groups (P>0.05). The distribution ratio showed no relevance to the smoking index and clinical phenotypes of AECOPD patients, whether carrying ins/ins + ins/del genotypes or del/del genes (P>0.05). Compared to AECOPD patients with del/del genotypes, AECOPD patients with ins/ins + ins/del genotypes had a lower body mass index (BMI), a higher COPD assessment test (CAT) score, a larger number of acute episodes and longer hospital stays (P<0.05). Conclusions: The detection of the -94ins/delATTG polymorphism in patients with AECOPD can predict disease prognosis. The BMI of patients with AECOPD was significantly lower in patients carrying the -94insATTG gene. Gene detection is therefore important in patients carrying ins/ins or ins/del genotypes following admission.
... In a study conducted in China AA genotype of rs696 polymorphism found to be correlated with elevated risk of nasopharyngeal carcinoma (22). Such association has also been confirmed with Behçet's disease and lung cancer in Turkish and Chinese populations respectively (23,24). AA variant involvement in increased risk of aforementioned malignancies must be due to the downregulation of IkBa expression because of the modulation of miR-449a binding site on 3'UTR of the gene. ...
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Aim In present study we have elucidated the role of 2758 A>G (rs696), in the recognition site of miR449a in the 3′ UTR of NFKB inhibitor alpha (NFKBIA) gene, in development of sporadic colorectal cancer. Background Colorectal cancer (CRC) is rated as second cause of cancer death. Genetic determinants are considered as driving forces in development of sporadic CRC. Single nucleotide polymorphisms (SNPs), are attributed as the main genetic factor in cancers susceptibility. MicroRNAs, are key players in post-translational gene regulation by binding to their specific recognition sequences located at 3' untranslated region (UTR) of mRNAs. Methods A case–control study using 143 CRC patients and 137 noncancerous counterparts were undertaken in order to determine rs696 genotypes using polymerase chain reaction– restriction fragment length polymorphism (PCR–RFLP) method. Results There was a significant difference for the genotype frequencies of rs696 between patients and controls. The frequencies of GG, AG, AA genotypes in the control group were 38.7, 45.3, and 16.1 %, respectively, and the genotype frequencies in case group were 19.6, 40.6, and 39.9 %, respectively. Conclusion Our results suggest significant correlation between rs696 polymorphism and colorectal cancer risk
... The upregulation of lnc-IGFBP4-1 increased the cell proliferation ability significantly in lung cancer cell lines, and there is proof of increased migration and invasion of cancer cells with an overexpression of lnc-IGFBP4-1. Similarly, downregulation of lnc-IGFBP4-1 decreased cell migration and invasion and increased apoptosis of lung cancer cells pointing to the influence of this lncRNA in lung cancer cell growth and proliferation in vitro and in vivo [10][11] . The energy (ATP) levels were significantly elevated in cancer cells that had an overexpression of lnc-IGFBP4-1, the increase in metabolic enzymes in upregulated lnc-IGFBP4-1 tumour cells and vice versa, thus indicating the role lnc-IGFBP4-1 plays at a transcriptional level in modulating lung cancer cell metabolism 1 which is a hallmark of cancer. ...
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Lung cancer being one of the leading causes of cancer-related deaths around the world has significantly added to the global burden of disease. Late diagnosis, unavailability of definitive treatment and an unclear pathophysiological mechanism behind the role of various genes expressed in lung cancer make it a challenge that needs new techniques and better understanding of the underlying pathology and role of genetics. Long non-coding RNAs, once considered insignificant, are now being elucidated to have major roles to play in the regulation and development of carcinogenesis. In this review, the ability of a lncRNA, lncRNA IGFBP4-1 to modulate cellular metabolic processes, eventually affecting lung cancer progression and consequently being a potential biomarker for lung cancer diagnosis has been discussed.
... Since the NFκB subunit type determines its role in inflammatory pathway, apoptosis, and carcinogenesis, the NFκB1; a pro-inflammatory protein with a functional promoter polymorphism at position −94ins/del ATTG was reported to exhibit a regulatory effect on NFκB1 gene and associated with many inflammatory diseases and cancers [37][38][39]. In the current study, a highly significant association was observed in NFκB1-94ins/ins genotype with CRC in Egyptian patients. ...
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To assess the association of genetic polymorphisms of NFκB1 and NFκBIA genes with the susceptibility to colorectal cancer (CRC). Subjects included 100 Egyptian patients with CRC (60 males and 40 females) in addition to 85 healthy controls (47 males and 38 females) from the same locality. For all participants, genetic polymorphisms of NFκB1-94ins/delATTG (rs28362491) and NFκBIA-881A/G (rs3138053) were detected by using restriction fragment length polymorphism polymerase chain reaction (RFLP-PCR). CRC patients showed a significantly higher frequency of the NFκB1-94ins/ins genotype than controls (30 vs. 4.7%) that was significant in the recessive (OR 17.69, 95% CI 5.41-57.82, p < 0.0001) and codominant models (OR 18.28, 95% CI 4.87-68.6, p < 0.0001). The NFκB1-94ins allele frequency was significantly higher among patients than controls (58 vs. 39%, OR 2.18, 95% CI 1.4-3.3, p = 0.0004). We also noticed that the genotype G/G of NFκBIA-881 polymorphism was present in patients (4%) while it was absent (0%) in controls with increased frequency of the NFκBIA-881G allele in patients compared to controls (23 vs. 14%, p = 0.041). These polymorphisms were more associated with smoking and advanced tumor staging. This study indicates that the NFκB1-94ins/ins genotype was associated with the risk of developing colorectal cancer in Egyptian subjects. Also, CRC cases showed an increase in the frequency of NFκBIA-881G allele but not reaching statistical significance for multiple comparisons.
... IL8 may be activated by nuclear factor kappa B (NFκB), which is another crucial inflammatory mediator that activates various inflammatory cytokines (10). NFκB subsequently induces chronic inflammation in lower airways and mediates carcinogenesis (11). It has previously been revealed that NFκB is frequently expressed in lung cancer (12). ...
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Chronic inflammation serves an important role in lung carcinogenesis, thus genetic polymorphisms involved in this pathway may affect the risk of lung cancer. The present case-control study focused on the association between lung cancer risk and genetic polymorphisms involved in inflammatory pathways. The study comprised 462 lung cancer cases and 379 controls from Japan. The roles of interleukin 8 (IL8) rs4073, nuclear factor kappa B (NFκB) rs28362491, cytochrome b-245, alpha polypeptide (CYBA) rs4673, NAD(P) H dehydrogenase, quinone 1 (NQO1) rs1800566, nitric oxide synthase 2 and inducible (NOS2) rs2297518 polymorphisms in lung carcinogenesis were investigated. An unconditional logistic model was used to estimate the odds ratio (OR) and 95% confidence interval (CI) for the association between the genetic polymorphisms and lung cancer risk. The multiplicative and additive [relative excess risk due to interaction, attributable proportion due to interaction (AP) and synergy index (SI)] interactions with cigarette smoking were also determined. A significant association was revealed between the TT genotype of NQO1 rs1800566 and an increased risk of lung cancer (OR=1.78; 95% CI=1.14-2.79). The additive interaction evaluations between CYBA rs4673 (AP=0.50, 95% CI=0.15-0.85; SI=2.66, 95% CI=1.01-6.99) and smoking were also statistically significant. NQO1 rs1800566 was significantly associated with lung cancer risk and smoking may influence the association between CYBA rs4673 and the risk of lung cancer. Additional studies with larger control and case populations are warranted in order to confirm the CYBA rs4673-smoking association suggested by the present study.
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p>Thirty-four years since its discovery, nuclear factor kappa B (NF-κB) remains a transcription factor with great potential for cancer therapy. However, NF-κB-targeted therapies have yet to find a way to be clinically translatable. Here we focus exclusively on the role of NF-κB in non-small cell lung cancer (NSCLC) and discuss its contributing effect on cancer hallmarks such as inflammation, proliferation, survival, apoptosis, angiogenesis, epithelial-mesenchymal transition (EMT), metastasis, stemness, metabolism, and therapy resistance. In addition, we present our current knowledge of the clinical significance of NF-κB and its involvement in the treatment of NSCLC patients with chemotherapy, targeted therapies, and immunotherapy.</p
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Between the DNA sequences of two randomly-selected human genomes, which consist of over 3 billion base pairs and twenty five thousand genes, there exists only 0.1% variation and 99.9% sequence identity. During the last couple of decades, extensive genome-wide studies have investigated the association between single-nucleotide polymorphisms (SNPs), the most common DNA variations, and susceptibility to various diseases. Because the immune system's primary function is to defend against myriad infectious agents and diseases, the large number of people who escape serious infectious diseases underscores the tremendous success of this system at this task. In fact, out of the third of the global human population infected with Mycobacterium tuberculosis during their lifetime, only a few people develop active disease, and a heavy chain smoker may inexplicably escape all symptoms of chronic obstructive pulmonary disease (COPD), lung cancer, and other smoke-associated lung diseases. This may be attributable to the genetic makeup of the individual(s), including their SNPs, which provide some resistance to the disease. Pattern recognition receptors (PRRs), transcription factors, cytokines and chemokines all play critical roles in orchestrating immune responses and their expression/activation is directly linked to human disease tolerance. Moreover, genetic variations present in the immune-response genes of various ethnicities may explain the huge differences in individual outcomes to various diseases and following exposure to infectious agents. The current review focuses on recent advances in our understanding of pulmonary diseases and the relationship of genetic variations in immune response genes to these conditions.
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To investigate the role of IκBα promoter polymorphisms in the development of Behçet’s disease, eighty-six patients with Behçet's disease and 120 healthy controls were enrolled in this study. The IκBα; -881A/G, -826C/T, -550A/T, -519C/T, and -297C/T polymorphisms were measured by the method of polymerase chain reaction/ restriction fragment length polymorphism. This study demonstrated that the genotype frequencies of IκBα -826C/T and -826T/T were significantly higher in the patients with Behçet's disease than in the controls. Both in the dominant and in the recessive models, the patients with Behçet's disease have higher frequencies of the IκBα -826T containing genotype than the controls. The allele frequency of IκBα -826T was significantly increased in the patients with Behçet’s disease. The frequencies of the IκBα -881A -826T -550A -519C -297C and IκBα -881A -826T -550A -519T -297C haplotypes were significantly higher in the patients with Behçet–s disease than in the controls. In contrast, the haplotype frequency of IκBα -881A -826C -550A -519C -297C in the patients with Behçet’s disease was significantly decreased. This study also revealed that the Behçet’s disease patients with IκBα -826T/T have higher prevalence of skin lesions than those without IκBα -826T/T. In summary, the IκBα -826T allele, IκBα -881A -826T -550A -519C -297C and IκBα -881A -826T -550A -519T -297C haplotypes might be associated with susceptibility to Behçet’s disease. The IκBα -826T/T genotype was related to the development of skin lesions in the patients with Behçet's disease.
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Respiratory diseases are major threats to human health.1 It is believed that chronic obstructive pulmonary disease (COPD) is both environmental and genetic2 3; however, specific genetic factors in the development of COPD have not been clearly identified, except for protease inhibitor types. Alpha1-antitrypsin deficiency is rare in the general population4 5 and accounts for less than 2% of the cases of COPD.6 7 The molecular genetics of COPD has recently been reviewed by Barnes.8 Pulmonary function measures are the most important phenotypes of COPD. The respiratory muscles, the thorax, and the lungs are the components of the ventilatory apparatus which can be evaluated by appropriate function tests.9 The dynamic functional capacity of the ventilatory apparatus can be assessed by the volume-time or flow-volume manoeuvres. Airflow rates and volumes inhaled or exhaled over specific time intervals provide information on the flow resistive properties of the airways.10 These pulmonary function measures predict the development of lung diseases11-13 and overall mortality.14-18 While the environmental determinants of pulmonary function have been extensively studied—for example, smoking and ambient air pollution—the genetic determinants have recently received increasing attention. Genetic epidemiological studies of pulmonary function are of potential importance in understanding normal pulmonary function and the aetiology and prevention of COPD and other respiratory diseases. This paper reviews the familial aggregation and segregation of pulmonary function and presents evidence for different influences of heredity on airway function, lung volume, and airway-parenchymal dysanapsis (relative airway size to lung size). Some methodological issues related to segregation analysis are also discussed. ### FAMILY STUDIES A number of family studies have provided evidence for familial resemblance of pulmonary function measures.19-30Studies have consistently shown significant parent-offspring and sibling-sibling correlations in lung volume and flow rate measures (table 1). Most studies found …
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Recently, several genome-wide association studies (GWAS) have identified many susceptible single nucleotide polymorphisms (SNPs) for chronic obstructive pulmonary disease (COPD) and lung cancer which are two closely related diseases. Among those SNPs, some of them are shared by both the diseases, reflecting there is possible genetic similarity between the diseases. Here we tested the hypothesis that whether those shared SNPs are common predictor for risks or prognosis of COPD and lung cancer. Two SNPs (rs6495309 and rs1051730) located in nicotinic acetylcholine receptor alpha 3 (CHRNA3) gene were genotyped in 1511 patients with COPD, 1559 lung cancer cases and 1677 controls in southern and eastern Chinese populations. We found that the rs6495309CC and rs6495309CT/CC variant genotypes were associated with increased risks of COPD (OR = 1.32, 95% C.I. = 1.14-1.54) and lung cancer (OR = 1.57; 95% CI = 1.31-1.87), respectively. The rs6495309CC genotype contributed to more rapid decline of annual Forced expiratory volume in one second (FEV1) in both COPD cases and controls (P<0.05), and it was associated with advanced stages of COPD (P = 0.033); the rs6495309CT/CC genotypes conferred a poor survival for lung cancer (HR = 1.41, 95%CI = 1.13-1.75). The luciferase assays further showed that nicotine and other tobacco chemicals had diverse effects on the luciferase activity of the rs6495309C or T alleles. However, none of these effects were found for another SNP, rs1051730G>A. The data show a statistical association and suggest biological plausibility that the rs6495309T>C polymorphism contributed to increased risks and poor prognosis of both COPD and lung cancer.
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Mitogen-activated protein kinase-activated protein kinase 2 (MAPKAPK2) may promote cancer development and progression by inducing tumorigenesis and drug resistance. To assess whether the copy-number variation g.CNV-30450 located in the MAPKAPK2 promoter has any effect on lung cancer risk or prognosis, we investigated the association between g.CNV-30450 and cancer risk in three independent case-control studies of 2,332 individuals with lung cancer and 2,457 controls and the effects of g.CNV-30450 on cancer prognosis in 1,137 individuals with lung cancer with survival data in southern and eastern Chinese populations. We found that those subjects who had four copies of g.CNV-30450 had an increased cancer risk (odds ratio = 1.94, 95% confidence interval [CI] = 1.61-2.35) and a worse prognosis for individuals with lung cancer (with a median survival time of only 9 months) (hazard ratio = 1.47, 95% CI = 1.22-1.78) compared with those with two or three copies (with a median survival time of 14 months). Meanwhile, four copies of g.CNV-30450 significantly increased MAPKAPK2 expression, both in vitro and in vivo, compared with two or three copies. Our study establishes a robust association between the functional g.CNV-30450 in MAPKAPK2 and risk as well as prognosis of lung cancer, and it presents this functional copy-number variation as a potential biomarker for susceptibility to and prognosis for lung cancer.
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Pulmonary function measures are heritable traits that predict morbidity and mortality and define chronic obstructive pulmonary disease (COPD). We tested genome-wide association with forced expiratory volume in 1 s (FEV1) and the ratio of FEV1 to forced vital capacity (FVC) in the SpiroMeta consortium (n = 20,288 individuals of European ancestry). We conducted a meta-analysis of top signals with data from direct genotyping (n <= 32,184 additional individuals) and in silico summary association data from the CHARGE Consortium (n = 21,209) and the Health 2000 survey (n < 883). We confirmed the reported locus at 4q31 and identified associations with FEV1 or FEV1/FVC and common variants at five additional loci: 2q35 in TNS1 (P = 1.11 x 10(-12)), 4q24 in GSTCD (2.18 x 10(-23)), 5q33 in HTR4 (P = 4.29 x 10(-9)), 6p21 in AGER (P = 3.07 x 10(-15)) and 15q23 in THSD4 (P = 7.24 x 10(-15)). mRNA analyses showed expression of TNS1, GSTCD, AGER, HTR4 and THSD4 in human lung tissue. These associations offer mechanistic insight into pulmonary function regulation and indicate potential targets for interventions to alleviate respiratory disease.
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Background: The American Thoracic Society recently recommended that chronic obstructive pulmonary disease be staged on the basis of the percentage of predicted FEV 1 Objective: To examine 1) the relation between the American Thoracic Society system for staging chronic obstructive pulmonary disease and health-related quality of life and 2) the effect of self-reported comorbid conditions on health-related quality of life. Design: Cross-sectional study. Setting: Outpatient clinics of respiratory departments of four hospitals and one primary health care center in Spain. Patients: 321 consecutive male patients with chronic obstructive pulmonary disease. Measurements: Functional respiratory impairment, FEV 1 , respiratory symptoms, and health-related quality of life. Respiratory symptoms and health-related quality of life were measured by using the Spanish version of the St. George's Respiratory Questionnaire and the Nottingham Health Profile. Results: Patient scores on the St. George's Respiratory Questionnaire were moderately to strongly associated with disease staging (r = 0.27 to 0.51). Compared with reference values, values for health-related quality of life for patients with stage I disease were substantially higher on the St. George's Respiratory Questionnaire (6 and 34; P < 0.001) and values for impairment were significantly greater in stage I patients with comorbid conditions (19 and 36; P = 0.001). At least one concomitant chronic condition was found in 84% of study patients. Comorbid conditions only partly influenced the observed pattern of deterioration of health-related quality of life with worsening stages of disease. Conclusion: Staging criteria for chronic obstructive pulmonary disease based on percentage of predicted FEV 1 separated groups of patients with varying degrees of impairment in health-related quality of life. Contrary to expectations, even patients with mild disease showed substantially compromised health-related quality of life. Comorbid conditions influenced the relation between chronic obstructive pulmonary disease and health-related quality of life.
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Nuclear factor-κB (NF-κB), a key transcription factor thought to play a major role in carcinogenesis, regulates many important signaling pathways involved in tumor promotion. Although NF-κB can be activated in lung cancer cell lines by tobacco exposure, there have been no studies of the expression of NF-κB in lung cancer pathogenesis. The immunohistochemical expression of NF-κB p65 was investigated in 394 lung cancers (370 nonsmall cell lung carcinomas [NSCLC]; and 24 small cell lung carcinomas [SCLC]) and 269 lung normal epithelium and preneoplastic lesions, including hyperplasias, squamous metaplasias, dysplasias, and atypical adenomatous hyperplasias. High levels of nuclear immunohistochemical expression of NF-κB p65 were detected in the lung cancers, with significantly higher levels in SCLCs compared with NSCLCs (P<.0001). In adenocarcinomas the NF-κB p65 expression level was significantly higher in advanced TNM stages (III-IV) than in earlier stages (I-II) (P<.0001), and when NF-κB p65 is dichotomized using 50% as the cutoff point (high vs low), a higher NF-κB p65 expression level was detected in tumors having either K-RAS (P = .02) or EGFR (P = .009) mutations compared with wildtype tumors. A relatively high level of nuclear NF-κB p65 expression was detected in normal and mildly abnormal epithelium, and a progression with increasing histology severity was detected in preneoplastic lesions. NF-κB p65 nuclear expression is an early and frequent phenomenon in the pathogenesis of lung cancer. The findings indicate that NF-κB activation plays an important role in lung cancer pathogenesis and is a suitable target for the development of new lung cancer therapies and chemoprevention strategies. Cancer 2006.
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Increased oxidative stress resulting in the activation of NF-κB is thought to play a crucial role in the expression of the cyclooxygenase-2 (COX-2), which is the key enzyme in proinflammatory prostanoid synthesis. In the current study, we investigated whether the aging process affects the status of the redox-sensitive NF-κB in rat kidney, and how this age-related modulation is related to COX-2 gene expression and COX-derived reactive oxygen species (ROS). We found that the aging process strongly enhanced the activation of NF-κB and its DNA-binding activity with an increased ROS status. Accompanied with the change in the NF-κB activity was a decreased IκBα as confirmed by the increased nuclear p65 protein. Thus, these data strongly indicated that the aging process increases NF-κB activity by downregulating IκBα. A closer examination further revealed that age-related oxidative status correlated with the increased COX-derived prostanoid biosynthetic process is mediated by the increased NF-κB-regulated COX activity. This increase in NF-κB activity was accompanied by the increased COX-2 mRNA and protein levels. Based on these data, we concluded that the age-related increase in redox-sensitive NF-κB translocation and binding activities are associated with increased ROS, and further that this transactivation was modulated by the age-related decrease of IκBα.
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