ArticlePDF Available

Abstract and Figures

Ever increasing sophistication in the application of new analytical technology has revealed that our genomes are much more fluid than was contemplated only a few years ago. More specifically, this concerns interindividual variation in copy number (CNV) of structural chromosome aberrations, i.e. microdeletions and microduplications. It is important to recognize that in this context, we still lack basic knowledge on the impact of the CNV in normal cells from individual tissues, including that of whole chromosomes (aneuploidy). Here, we highlight this challenge by the example of the very first chromosome aberration identified in the human genome, i.e. an extra chromosome 21 (trisomy 21, T21), which is causative of Down syndrome (DS). We consider it likely that most, if not all, of us are T21 mosaics, i.e. everyone carries some cells with an extra chromosome 21, in some tissues. In other words, we may all have a touch of DS. We further propose that the occurrence of such tissue-specific T21 mosaicism may have important ramifications for the understanding of the pathogenesis, prognosis and treatment of medical problems shared between people with DS and those in the general non-DS population.
Content may be subject to copyright.
Fax +41 61 306 12 34
E-Mail karger@karger.ch
www.karger.com
Cytogenet Genome Res
DOI: 10.1159/000346028
Trisomy 21 Mosaicism: We May All Have a
Touch of Down Syndrome
M.A. Hultén a, c J. Jonasson e E. Iwarsson c, d P. Uppal b, c S.G. Vorsanova f–h
Y.B. Yurov f–h I.Y. Iourov f, g
a Warwick Medical School, University of Warwick, Warwick , and
b Imperial College School of Medicine, London , UK;
Departments of
c Molecular Medicine and Surgery, Karolinska Institutet and
d Clinical Genetics, Karolinska
University Hospital, Stockholm , and
e Department of Clinical and Experimental Medicine, Linköping University,
Linköping , Sweden; f Institute of Pediatrics and Children Surgery, Rosmedtechnologii,
g National Research Center of
Mental Health, Russian Academy of Medical Sciences, and
h Moscow City University of Psychology and Education,
Moscow , Russia
ing of the pathogenesis, prognosis and treatment of medical
problems shared between people with DS and those in the
general non-DS population. Copyr ight © 2013 S. Karger AG, Ba sel
Recently there has been considerable focus on the ap-
plication of new technology in the identification of sub-
microscopic structural chromosome aberrations, such as
microdeletions and microduplications [Conrad et al.,
2010; Stankiewicz and Lupski, 2010; Lichtenbelt et al.,
2011; Mills et al., 2011; Poot, 2011; Forsberg et al., 2012].
Most of this work has been performed on DNA samples
extracted from blood samples, under the assumption that
the majority, if not all, tissues of the affected subjects
would carry the same abnormality. By comparison, little
attention has been given to the possible occurrence of tis-
sue-specific mosaicism, which could have significant
clinical implications [Dumanski and Piotrowski, 2012].
This lack of knowledge does in fact not only concern
structural, but also numerical chromosome aberrations
[Jackson-Cook, 2011]. We review this situation, using the
example of the very first chromosome aberration identi-
fied in the human genome, i.e. an extra chromosome 21
Key Words
Chromosome aberration Down syndrome Fetus
Gonad Mosaicism Trisomy 21
Abstract
Ever increasing sophistication in the application of new ana-
lytical technology has revealed that our genomes are much
more fluid than was contemplated only a few years ago.
More specifically, this concerns interindividual variation in
copy number (CNV) of structural chromosome aberrations,
i.e. microdeletions and microduplications. It is important to
recognize that in this context, we still lack basic knowledge
on the impact of the CNV in normal cells from individual tis-
sues, including that of whole chromosomes (aneuploidy).
Here, we highlight this challenge by the example of the very
first chromosome aberration identified in the human ge-
nome, i.e. an extra chromosome 21 (trisomy 21, T21), which
is ca us at ive of Do wn sy nd rom e ( DS ). W e co ns id er it l ik el y th at
most, if not all, of us are T21 mosaics, i.e. everyone carries
some cells with an extra chromosome 21, in some tissues. In
other words, we may all have a touch of DS. We further pro-
pose that the occurrence of such tissue-specific T21 mosa-
icism may have important ramifications for the understand-
Publish ed online: January 10, 2013
Prof. Maj A. Hultén
Warwick Medical School
University of Warwick
Covent ry CV4 7A L (UK)
E-Mail maj.hulten @ ki.se
© 2013 S. Ka rger AG, Basel
1424–8581/13/0000–0000$38.00/0
Accessible online at:
www.karger.com/cgr
Hultén /Jonasson /Iwarsson /Uppal /
Vor s an ov a
/Yurov /Iourov
Cytogenet Genome Res
2
(trisomy 21, T21) causative of Down syndrome (DS)
[Lejeune et al., 1959]. In this setting, it is particularly im-
portant to note that even the most sophisticated microar-
ray technology will not allow detection of copy number
variations (CNV) mosaicism occurring in fewer than 5%
of cells. Currently, the only technology available for the
reliable identif ication of lower grades of mosa icism i s flu-
orescence in situ hybridization (FISH). Uniquely, this
technology allows the identification of CNV in individu-
al cell nuclei without DNA extraction. Here the limitation
in identifying low-grade mosaicism is the number of cells
to be analyzed by fluorescence microscopy and, thus, the
labour involved in this [see e.g. Hultén et al., 2010a; Vor-
sanova et al., 2010].
High-Grade T21 Mosaicism in DS Cases
It is now well recognized that DS is the most common
genetic reason for learning disability, estimated to affect
around 1/550–1/1,000 newborns worldwide [Oster-Gra-
nite et al., 2011]. Numerous studies have implicated that
the majority of people diagnosed as having the typical
features of DS carry the extra chromosome in all their
body cells. A minority (around 1–2%) are high-grade T21
mosaics, most commonly represented by an admixture
with a small proportion of cells (around 10–20%) having
the normal chromosome complement.
As might be expected, the severity of the clinical pic-
ture in such DS cases is related to the degree of T21 mo-
saicism, usually ascertained by examination of in vitro
cultured blood lymphocytes and, more rarely, uncul-
tured tissue samples, such as buccal smears [Papavassi-
liou et al., 2009; Shin et al., 2010].
Low-Grade T21 Mosaicism in Borderline DS Cases
Low-grade T21 mosaicism was first recognized by
Clarke et al. [1961, 1963], who performed a detailed chro-
mosome analysis of several tissue samples from a girl
w it h a ppar entl y n or ma l i nt el li genc e a nd on ly su bt le fa ci al
dysmorphism as seen with DS. Here, they identified T21
cells in a blood culture (14%), a bone marrow sample
(17%) as well as in 2 skin cultures (32 and 38%).
Since then a large number of similar individual case
reports have been published. The indication for the ex-
tended chromosome analysis has varied. The incidence of
T21 cells is usually investigated by analysis of in vitro cul-
tured blood lymphocytes and is in the order of a couple
of hundred cells. This is exemplified by a recent report on
a patient with young-onset dementia [Ringman et al.,
2008]. Interestingly, however, another recent case of a
new-born girl with only subtle features of DS showed an
absence of T21 cells in a traditional blood lymphocyte
culture (0/22 metaphases) but 31% T21 interphase cell nu-
clei in buccal smears by FISH. Multiple duplications
along ch romosome 21 were re vea led by microarray geno -
typing of blood DNA [Leon et al., 2010].
Low-Grade T21 Mosaicism in the General Population
Our own interest has focused specifically on the oc-
currence of even lower-grade T21 mosaicism in the gen-
eral non-DS population, where there has been no specific
reason to suspect T21 mosaicism [Hultén et al., 2008,
2010a, b; review in Iourov et al., 2008, 2010]. The inci-
dence of such low-grade T21 mosaicism, i.e. occurring in
less than 0.51.0% of cells, can currently only be verified
by fluorescence microscopy analysis of interphase nuclei
in the different tissue samples, labelled with chromo-
some-specific DNA probes ( fig.1 ) [review in Vorsanova
et al., 2010]. The number of cells to be analy zed must also
be high, i.e. in the order of thousands rather than hun-
dreds. Due to these technological difficulties, it comes as
no surprise that to date only a limited number of tissues
i n a sm al l n um be r o f s ubj ec ts h ave be en in ve st ig at ed , doc -
umenting the occurrence of T21 mosaicism.
One specific aspect of this concerns the identification
of parental germinal T21 mosaicism in DS. Using FISH
to record the incidence of T21 mosaicism in ovarian sam-
ples from 20 female fetuses, where termination of preg-
nancy was performed for a social reason, we have con-
cluded that most, if not all women are germinal T21 mo-
saics [Hultén et al., 2008 and unpubl. observations]. We
have further proposed that the degree of germinal T21
mosaicism, arising in the early stages of maternal oogen-
esis, may be of crucial importance in determining the
likelihood of having a child with T21 DS. The situation
in human males is more complex, as foetal testicular T21
mosaicism is very rare by comparison to foetal ovarian
T21 mosaicism [Hultén et al., 2008, 2010b]. On the other
hand, disomy 21 mosaicism in sperm is common and
generally agreed to be around 1/1,000 [table2 in Huln
et al., 2010b; Tempest, 2011; Templado et al., 2011].
In terms of somatic mosaicism, we have paid particu-
lar attention to the increased risk for people with DS to
get Alzheimer’s disease at an early age. We have previ-
ously showed that in cases ascertained from the non-DS
T21 Mosaicism Cytogenet Genome Res
3
general population, who have been diagnosed with
Alzheimer’s Disease, the incidence of T21 cell nuclei in
brain autopsy samples is more than 10 times that in age-
and sex-matched controls [review in Iourov et al., 2008,
2010]. Using the technology described in Iourov et al.
[2012], we have now extended this type of investigation to
5,000 cases in the non-DS general population, analyzing
more than 5,000 interphase nuclei from each of 2 differ-
ent somatic tissues, i.e. chorionic villi, fetal brain and
postmortem brain samples [Iourov et al., unpubl. obser-
vations]. We then documented T21 in interphase cell nu-
cl ei r angi ng f rom 0.29 t o 0. 70%, i.e. in chor ion ic v il li (ear-
ly 0.39 and late 0.70%), fetal brain (0.30%) and autopsy
brain samples (children 0.29 and adults 0.42%).
The Wider Implications
There are wider implications concerning the occur-
rence of T21 mosaicism, for example in understanding
the prognosis of medical problems shared between DS
and non-DS populations. One of the outstanding ques-
tions here is if any such conditions could be caused (or as
the case may be hindered) by different degrees of T21 mo-
saicism in the relevant tissue samples amongst the non-
DS general population [Hultén et al., 2010a].
Trisomy mosaicism can arise either by losing one
chromosome 21, so-called ‘somatic rescue’ in a T21 zy-
gote, or by nondisjunction at subsequent cell divisions in
a normal disomy 21 zygote. It seems likely somatic ‘aneu-
ploidization’ is an on-going process throughout develop-
ment that only affects the phenotype above a certain
threshold of T21 mosaicism in various tissues [Iourov et
a l., 2 00 8]. From th is po int of v ie w, i t wou ld in fa ct be mor e
correct to say that we all have a touch of an acquired rath-
er than an inborn form of DS. Nevertheless, the pheno-
typic effect of the T21 cells in the different tissues, depen-
dent on the degree of T21 mosaicism, is likely to be the
same.
It is well established that those with DS are predis-
posed to a number of medical conditions. We have re-
cently summarized available literature concerning T21
mosaicism in relation to childhood leukaemia, solid can-
cers and Alzheimer’s disease [Hultén et al., 2010a, Bo-
rysov et al., 2011; Williams et al., 2011]. T21 mosaicism
has been seen to dramatically increase the incidence of
transient acute myeloid leukaemia, acute lymphocytic
leukaemia and testicular tumours [Hultén et al., 2010a].
Another intriguing aspect to note concerns the DS popu-
lation being predisposed to Alzheimer’s disease but, at
the same time, protected from the common medical con-
dition atherosclerosis and certain types of solid malig-
nancies, such as breast cancer [Draheim et al., 2010; Hul-
tén et al., 2010a; Borysov et al., 2011; Tabares-Seisdedos
et al., 2011]. There are, however, a large number of other
medical problems affecting the DS population [Roizen,
2010], where future research may bring new light on the
potential role of T21 mosaicism in individual tissue sam-
ples for the development and treatment of these condi-
tions.
Fig. 1. FISH images of chromosome 21 in interphase cell nuclei.
Top panel: Images of foetal ovarian cell nuclei, using 2 chromo-
some 21-specific probes located near the end of 21q, showing one
normal disomy 21 and one T21 nucleus, illustrating normal fe-
male T21 germinal mosaicism (0.54%). Middle panel: Images of
brain cel l nuclei from an autopsy of a young normal control, using
a chromosome 21-specific multicolor banding probe, showing
one normal disomy 21 and one T21 nucleus, illustrating normal
brain cell T21 mosaicism (0.29%). Bottom panel: Images of brain
cell nuclei from an autopsy of a patient with Alzheimer’s disease,
using a chromosome 21-specific multicolor banding probe, show-
ing 2 normal disomy 21 and 1 T21 nucleus, illustrating Alzhei-
mer-associated brain cell T21 mosaicism (11%). Top and middle
panels are revised from Hultén et al. [2010a].
Hultén /Jonasson /Iwarsson /Uppal /
Vor s an ov a
/Yurov /Iourov
Cytogenet Genome Res
4
References
Borysov SI, Granic A, Padmanabhan J, Walczak
CE, Potter H : Alzheimer A di srupts the mi-
totic spindle and directly inhibits mitotic
microtubule motors. Cell Cycle 10:
1397–
1410 (2011).
Clarke CM, Edwards JH, Smallpeice V: 21-triso-
my/normal mosa icism in an intelligent child
with some mongoloid characters. Lancet 1:
1028–1030 (1961).
Clarke CM, Ford CE, Edwards JH, Smallpeice V:
21 trisomy/normal mosaicism in an intelli-
gent child with some mongoloid characters.
Lancet 2:
1229 (1963).
Conrad DF, Bird C, Blackburne B, Lindsay S,
Mamanova L, et al: Mutation spectrum re-
vealed by breakpoint sequencing of human
germline CNVs. Nat Genet 42:
385–391
(2010).
Dr aheim CC, G eijer JR, Dengel DR : Comparison
of intima-media thickness of the carotid ar-
tery and cardiovascular disease risk factors
in adults with versus without the Down syn-
drome. Am J Cardiol 106:
1512–1516 (2010).
Dumanski JP, Piotrowski A: Structural genetic
variation in the context of somatic mosa-
icism. Met hods Mol Biol 838:
249–272 (2012).
Forsberg L, Rasi C, Razzaghian HR, Pakalapati
G, Waite L, et al: Age-related somatic struc-
tural changes in the nuclear genome of hu-
man blood cells. Am J Hum Genet 90:
217–
228 (2012).
Hultén MA, Patel SD, Tankimanova M, West-
gren M, Papadogiannakis N, et al: On the
origin of trisomy 21 Down syndrome. Mol
Cytogenet 1:
21 (2008).
H ul tén MA , J ona ss on J, N ord gr en A, Iwa rs so n E:
Germinal and somatic trisomy 21 mosa-
icism: how common is it, what are the impli-
cations for individual carriers and how does
it come about? Curr Genomics 11:
409–419
(2010a).
Hultén MA, Patel SD, Westgren M, Papadogi-
annakis N, Jonsson AM, et al: On the pater-
nal origin of trisomy 21 Down syndrome.
Mol Cytogenet 3:
4 (2010b).
Iourov IY, Vorsanova SG, Yurov YB: Chromo-
somal mos aicism goes globa l. Mol Cytogenet
1:
26 (2008).
Iourov IY, Vorsanova SG, Yurov YB: Somat ic ge-
nome variations in health and disease. Curr
Genomics 11:
387–396 (2010).
Iourov IY, Vorsanova SG, Svetlana B, Yurov YB:
Single cell genomics of the brain: focus of
neuronal diversity and neuropsychiatric dis-
eases. Curr Genomics 13:
477–488 (2012).
Jackson-Cook C: Constitutional and acquired
autosomal a neuploidy. Clin Lab Med 31:
481
511 (2011).
Lejeune J, Gautier M, Turpin R: Study of somat-
ic chromosomes f rom 9 mongoloid children.
C R Hebd Seances Acad Sci 248:
1721–172 2
(195 9).
Leon E, Zou YS, Mi lunsky JM: Mosaic Down
syndrome in a patient with low-level mosa-
icism detected by microarray. Am J Med
Genet A 152A:3154–3156 (2010).
L ichtenbelt KD, Knoers N V, Schurin g-Blom GH:
From karyotyping to array-CGH in prenatal
diagnosis. Cytogenet Genome Res 135:
241–
250 (2011).
Mills RE, Walter K, Stewart C, Handsaker RE ,
Chen K, et al: Mapping copy number varia-
tion by population-scale genome sequenc-
ing. Nature 470:
59–65 (2011).
Oster-Granite ML, Pa risi MA, Abbeduto L, Ber-
lin DS, Bodine C, et al: Down syndrome: na-
tional conference on patient registries, re-
search databases, and biobanks. Mol Genet
Metab 104:
13–22 (2011).
P a pa va s si l io u P, Yor k T P, Gu rs o y N , H i ll G , N ic e-
ly LV, e t al.: The phenoty pe of persons havi ng
mosaicism for trisomy 21/Down syndrome
reflects the percentage of trisomic cel ls pres-
ent in dif ferent tissues. Am J Med Genet A
149A:573–583 (2009).
Poot M: Preface. Cytogenet Genome Res 135:
171–173 (2011).
Ringman JM, Rao PN, Lu PH, Cederbaum S:
Mosaicism for trisomy 21 in a patient with
young-onset dementia: a case report and
brief literature review. Arch Neurol 65:
412–
415 (2008).
Roizen NJ: Overview of health issues among
persons with Down syndrome, in Urbano
C (ed): International Review of Research in
Ment al Re tard ation , Heal th Issues i n Dow ns
Syndrome, pp 334 (Academic Press, San
Diego 2010).
Shin M, Siffel C, Correa A: Survival of children
with mosaic Down syndrome. Am J Med
Genet A 152A:800–801 (2010).
Sta nkiewicz P, Lupski JR: St ructura l variation in
the human genome and its role in disease.
Annu Rev Med 61:
437–455 (2010).
Ta bar es-S eis ded os R , Du mont N, Ba udo t A, Va l-
deras JM, Climent J, et al: No paradox, no
progress: i nverse cancer comorbidit y in peo-
ple with other complex diseases. Lancet On-
col 12:
604–608 (2011).
Tempest HG: Meiotic recombination errors, the
origin of sperm aneuploidy and clinical rec-
ommendation s. Syst Biol Reprod Med 57:
93–
101 (2011).
Te mp lad o C , V id al F, E st op A : A ne upl oi dy in h u-
man spermatozoa. Cytogenet Genome Res
133:
91–99 (2011).
Vorsanova SG, Yurov YB, Iourov IY: Human in-
terphase chromosomes: a review of available
molecular cytogenetic technologies. Mol
Cytogenet 3:
1 (2010).
Williams BA, Meyn MS, Hitzler JK: Transient
leukemia in newborns without Down syn-
drome: diagnostic and management chal-
lenges. J Pediatr Hematol Oncol 33:e261–
e263 (2011).
Conclusion
On the basis of these considerations, we believe that
T21 mosaicism is a feature shared in common between
most, if not all, of the general population. Thus, it is im-
portant to recognize that the occurrence of tissue-specif-
ic T21 mosaicism may have significant ramifications for
the understanding of the pathogenesis and treatment of
common medical problems that occur with a higher in-
cidence in the DS population in comparison to the non-
DS general population.
Acknowledgements
Our work in this area has been supported by grants from the
Wellcome Trust (061202/ZOOZ) and BBSRC (BB/C003500/1) to
M.A.H., The Swedish Research Council and Stockholm County
Council to E.I., Deutsches Luft- und Raumfahrtszentrum/Bun-
desministerium für Bildung und Forschung (RUS 09/006 and
RUS 11/002) to S.G.V., Y.B.Y. and I.Y.I.
... Mosaicism in Down Syndrome, in which not all cells have trisomy 21, has been reported to occur in 2-4% of cases. Mosaic Down Syndrome can be found in two categories, according to the proportion of trisomic cells present in the individual: high grade (80-90% trisomic cells) and low grade (0.1-38% trisomic cells) (Hultén et al., 2013). ...
... In patients with mosaic Down Syndrome, the number of trisomic cells in several tissues and cells is related to the phenotypic manifestations (Modi et al., 2003;Papavassiliou et al., 2009). Respectively, mosaicism can be of high grade, in which patients have a high proportion of trisomic cells (80-90%) with distinctive Down Syndrome characteristics; or low grade, in which there is a low ratio of trisomic cells (0.1-38%), and the syndrome is not phenotypically perceptible (Hultén et al., 2013). The severity of genotypic and phenotypic characteristics in mosaic Down Syndrome will depend on the grade of mosaicism displayed at the cellular and histological levels, that is to say, patients with mosaic trisomy 21 could show a similar phenotype to those with non-mosaic trisomy, or even could show no phenotype at all (Papavassiliou et al., 2009). ...
... In Trisomy 21 Mosaicism: We May All Have a Touch of Down Syndrome Hultén et al. (2013) concluded that mosaicism of chromosome 21, in specific tissues and with variable trisomic cell proportions, is a shared characteristic in most, if not all of the general population. Considering that one may find trisomic cells in a population of fetuses with normal phenotype, the oocyte mosaicism selection model emerges, suggesting a different sexual prevalence of mosaic trisomy 21 in germinal lines, with much higher incidence in fetal ovaries than in the testes. ...
Article
Full-text available
Trisomy 21 is the most common genetic disorder seen among infants, and it causes spontaneous abortions, abnormal neural development and other pathologies associated with newborn development. In newborns with this trisomy, 90-95% have full trisomy, 1.4-1.9% have mosaicism, and 1-4.7% have translocations. The principal cause of trisomy 21 is advanced maternal age, in which recombination errors may occur during fetal development, age-related accumulation of damaged DNA, cohesin degradation producing the premature loss of chromosomes or sister chromatids, and alterations during the spindle formation process. The paternal age has also an effect on trisomy 21, specifically during male aging, when there is higher risk of chromosomal breaking in spermatozoa. Epigenetics is also an important risk factor of trisomy 21 through changes in the DNA methylation process, histone modification and non-coding RNAs. Assisted reproductive technologies (ART) have emerged in recent years as a safe alternative for couples with fertility problems. These techniques, which include controlled ovarian stimulation (COS), in vitro fertilization (IVF), intracytoplasmic sperm injection (ICSI) and vitrification, decrease the incidence of aneuploidy in human preimplantation embryos, and are widely used. The following study aims to review and discuss the available literature on trisomy 21 in the field of assisted human reproduction.
... The incidence of mosaicism could be higher than previously believed, and could very well be an important mechanism of the phenotypic variability seen in this condition. [1][2][3][4][5] Hence, mosaicism might need to be meticulously excluded in patients with a limited or an overall less-severe phenotype. 5,6 Other than specific mutations in key genes, mosaicism could also be an important reason for the geographical variation in the cardiac manifestations of trisomy 21. [7][8][9][10][11][12][13] The severity of somatic manifestations, the incidence of complications, and the overall prognosis may also be related to mosaicism. ...
Article
Full-text available
We report findings from a term infant with persistent patency of the ductus arteriosus (PDA). His fetal tests had shown some ambiguity for trisomy 21. However, he did not show any of the frequently-seen phenotypic features associated with trisomy 21 in utero or after birth, and the postnatal karyotype was reported as normal. One of our team members decided to request for a repeat karyotype and he was then identified as a mosaic for this aneuploidy. These observations are potentially important because the proportion of affected cells could very well be a determinant of the phenotypic variability seen in infants with Down syndrome. Hence, mosaicism might need to be meticulously excluded in patients who are presented with only one or more phenotypic features associated with trisomy 21. In this report, we have briefly reviewed the need for evaluation in such infants; the diagnosis requires specific evaluation of in-vitro cultured blood lymphocytes from the patients, siblings, and parents for somatic and germinal trisomy 21 mosaicism. The mechanisms underlying the origin of trisomy 21 mosaicism are still unclear; embryonic meiotic errors such as nondisjunction and anaphase lag, and subsequent mitotic malsegregation may be responsible. Uniparental disomy needs investigation. In the absence of somatic recombination, postzygotic malsegregation in an originally unaffected, disomy 21 zygote could also be a cause. The incidence of this condition in the community might be higher than hitherto believed. HigHligHts • Infants with trisomy 21 frequently have persistent patency of ductus arteriosus (PDA) and/or other cardiac defects. • We present a term male infant who had a persistent PDA. He did not show the phenotypic features that are usually seen in infants with trisomy 21 and initial tests showed a normal karyotype. Repeat tests identified him as a mosaic. • The diagnosis was confirmed using examination of in vitro cultured blood lymphocytes for somatic and germinal trisomy 21 mosaicism. • This disorder might be more common in the general population than previously believed, and hence, appropriate investigations might have to be considered in more patients. In this brief report, we present findings from a term infant with persistent PDA. He did not show the characteristic phenotypic features of trisomy 21 but turned out to have mosaicism for this karyotypic aneuploidy. The incidence of mosaicism could be higher than previously believed, and could very well be an important mechanism of the phenotypic variability seen in this condition. 1-5 Hence, mosaicism might need to be meticulously excluded in patients with a limited or an overall less-severe phenotype. 5,6 Other than specific mutations in key genes, mosaicism could also be an important reason for the geographical variation in the cardiac manifestations of trisomy 21. 7-13 The severity of somatic manifestations, the incidence of complications, and the overall prognosis may also be related to mosaicism. 14-21 cAse Description We evaluated plasma samples from a mother at 18 weeks' gestation for cell-free fetal DNA; there was a possibility of fetal aneuploidy in some samples but overall, the results were ambiguous. After delivery, the full-term male infant was noted to have a systolic murmur that was audible even on postnatal day 3. He did not show any of the frequently-seen phenotypic features associated with trisomy 21 on a detailed, careful physical examination performed by multiple care-providers, and the postnatal karyotype was reported
... Notably, mouse chromosome 16 is syntenic with human chromosome 21, which is constitutively trisomic in Down syndrome and has been reported to experience somatic duplications in the brain in the context of aging and neurodegeneration [33][34][35][36] . Mice with germline trisomy-16 die in utero 37 , but single brain cells with T16 have been reported previously 25 . ...
Preprint
Full-text available
Somatic mutations alter the genomes of a subset of an individual's brain cells, impacting gene regulation and contributing to disease processes. Mosaic single nucleotide variants have been characterized with single-cell resolution in the brain, but we have limited information about large-scale structural variation, including whole-chromosome duplication or loss. We used a dataset of over 415,000 single-cell DNA methylation and chromatin conformation profiles across the adult mouse brain to identify aneuploid cells comprehensively. Whole-chromosome loss or duplication occurred in <1% of cells, with rates up to 1.8% in non-neuronal cell types, including oligodendrocyte precursors and pericytes. Among all aneuploidies, we observed a strong enrichment of trisomy on chromosome 16, which is syntenic with human chromosome 21 and constitutively trisomic in Down syndrome. Chromosome 16 trisomy occurred in multiple cell types and across brain regions, suggesting that nondisjunction is a recurrent feature of somatic variation in the brain.
... The mechanism of mosaics can be referred to as "fuzzy inheritance", where inheritance is defined by a spectrum of possible phenotypes [6]. The karyotypic mosaics have been discussed in Down's syndrome [82], various neurodevelopmental/neurobehavioral and neuropsychiatric disorders, neurodegeneration, cancer, and aging [83][84][85]. Phenotypic variations, including treatment response, are likely contributed to by the degree of mosaicism, and we anticipate that more diseases will be linked to somatic genomic mosaicism soon. ...
Article
Full-text available
The powerful utilities of current DNA sequencing technology question the value of developing clinical cytogenetics any further. By briefly reviewing the historical and current challenges of cytogenetics, the new conceptual and technological platform of the 21st century clinical cytogenetics is presented. Particularly, the genome architecture theory (GAT) has been used as a new framework to emphasize the importance of clinical cytogenetics in the genomic era, as karyotype dynamics play a central role in information-based genomics and genome-based macroevolution. Furthermore, many diseases can be linked to elevated levels of genomic variations within a given environment. With karyotype coding in mind, new opportunities for clinical cytogenetics are discussed to integrate genomics back into cytogenetics, as karyotypic context represents a new type of genomic information that organizes gene interactions. The proposed research frontiers include: 1. focusing on karyotypic heterogeneity (e.g., classifying non-clonal chromosome aberrations (NCCAs), studying mosaicism, heteromorphism, and nuclear architecture alteration-mediated diseases), 2. monitoring the process of somatic evolution by characterizing genome instability and illustrating the relationship between stress, karyotype dynamics, and diseases, and 3. developing methods to integrate genomic data and cytogenomics. We hope that these perspectives can trigger further discussion beyond traditional chromosomal analyses. Future clinical cytogenetics should profile chromosome instability-mediated somatic evolution, as well as the degree of non-clonal chromosomal aberrations that monitor the genomic system’s stress response. Using this platform, many common and complex disease conditions, including the aging process, can be effectively and tangibly monitored for health benefits.
... It is important to note that somatic mosaicism is detectable in biopsies of healthy individuals [57,95,96]. Analogously, from 0.5 to 12% of genomically abnormal cells are consistently detected in the unaffected brain [15,17,19,23,30,34,97]. ...
Article
Full-text available
It is hard to believe that all the cells of a human brain share identical genomes. Indeed, single cell genetic studies have demonstrated intercellular genomic variability in the normal and diseased brain. Moreover, there is a growing amount of evidence on the contribution of somatic mosaicism (the presence of genetically different cell populations in the same individual/tissue) to the etiology of brain diseases. However, brain-specific genomic variations are generally overlooked during the research of genetic defects associated with a brain disease. Accordingly, a review of brain-specific somatic mosaicism in disease context seems to be required. Here, we overview gene mutations, copy number variations and chromosome abnormalities (aneuploidy, deletions, duplications and supernumerary rearranged chromosomes) detected in the neural/neuronal cells of the diseased brain. Additionally, chromosome instability in non-cancerous brain diseases is addressed. Finally, theoretical analysis of possible mechanisms for neurodevelopmental and neurodegenerative disorders indicates that a genetic background for formation of somatic (chromosomal) mosaicism in the brain is likely to exist. In total, somatic mosaicism affecting the central nervous system seems to be a mechanism of brain diseases.
... These discoveries in Rett syndrome biology were the basis for the decision of holding VIII World Rett Syndrome Congress & Symposium of rare diseases in Russia [75]. Other genetic diseases, which were the focus of successful Svetlana's research, were disorders associated with trisomy 21 (Down syndrome, mosaic trisomy 21 etc.) [76][77][78] and with subtelomeric deletions [79,80]. ...
... Moreover, dynamic nature of somatic chromosomal mosaicism leads to the involvement in pathogenetic and ontogenetic processes [7,36,37]. These processes are further involved in intercellular genetic (genomic) diversity [35,38,39], early-onset brain diseases [7,10,28,40,41], late-onset brain diseases [34,[42][43][44][45][46], behavior [47], and aging [43,[48][49][50][51]. Therefore, the analysis of KSM in the context of brain diseases seems to be required. Accordingly, we took an opportunity to evaluate KSM in a large neurodevelopmental cohort started to be described decades ago [10,17,52]. ...
Article
Full-text available
Background Klinefelter syndrome is a common chromosomal (aneuploidy) disorder associated with an extra X chromosome in males. Regardless of numerous studies dedicated to somatic gonosomal mosaicism, Klinefelter syndrome mosaicism (KSM) has not been systematically addressed in clinical cohorts. Here, we report on the evaluation of KSM in a large cohort of boys with neurodevelopmental disorders. Furthermore, these data have been used for an extension of the hypothesis, which we have recently proposed in a report on Turner’s syndrome mosaicism in girls with neurodevelopmental disorders. Results Klinefelter syndrome-associated karyotypes were revealed in 49 (1.1%) of 4535 boys. Twenty one boys (0.5%) were non-mosaic 47,XXY individuals. KSM was found in 28 cases (0.6%) and manifested as mosaic aneuploidy (50,XXXXXY; 49,XXXXY; 48,XXXY; 48,XXYY; 47,XXY; and 45,X were detected in addition to 47,XXY/46,XY) and mosaic supernumerary marker chromosomes derived from chromosome X (ring chromosomes X and rearranged chromosomes X). It is noteworthy that KSM was concomitant with Rett-syndrome-like phenotypes caused by MECP2 mutations in 5 boys (0.1%). Conclusion Our study provides data on the occurrence of KSM in neurodevelopmental disorders among males. Accordingly, it is proposed that KSM may be a possible element of pathogenic cascades in psychiatric and neurodegenerative diseases. These observations allowed us to extend the hypothesis proposed in our previous report on the contribution of somatic gonosomal mosaicism (Turner’s syndrome mosaicism) to the etiology of neurodevelopmental disorders. Thus, it seems to be important to monitor KSM (a possible risk factor or a biomarker for adult-onset multifactorial brain diseases) and analysis of neuromarkers for aging in individuals with Klinefelter syndrome. Cases of two or more supernumerary chromosomes X were all associated with KSM. Finally, Rett syndrome-like phenotypes associated with KSM appear to be more common in males with neurodevelopmental disorders than previously recognized.
... Because aneuploidies are the most common genetic abnormality in humans and more than 50% of IVF embryos are aneuploid [12,13], preimplantation genetic testing for aneuploidies (PGT-A) is now a very well-established technique. In the last 15 years, new technologies based on whole genome amplification (CGH-Comparative Genome Hybridization, NGS-Next Generation Sequencing) have been implemented, thus expanding the possibilities of the genetic testing of embryo aneuploidies, especially increasing the ability to recognize embryonic mosaicism [14,15]. According to the recommendation of PGDIS (Preimplantation Genetic Diagnosis International Society, 2019), embryos up to a maximum of 20% of the mosaic are considered genetically normal. ...
Article
Full-text available
The selection of the best embryo for embryo transfer (ET) is one of the most important steps in IVF (in vitro fertilisation) treatment. Preimplantation genetic testing (PGT) is an invasive method that can greatly facilitate the decision about the best embryo. An alternative way to select the embryo with the greatest implantation potential is by cultivation in a time-lapse system, which can offer several predictive factors. Non-invasive time-lapse monitoring can be used to select quality embryos with high implantation potential under stable culture conditions. The embryo for ET can then be selected based on the determined morphokinetic parameters and morphological features, which according to our results predict a higher implantation potential. This study included a total of 1027 morphologically high-quality embryos (552 normal and 475 abnormal PGT-tested embryos) from 296 patients (01/2016–06/2021). All embryos were cultivated in a time-lapse incubator and PGT biopsy of trophectoderm cells on D5 or D6 was performed. Significant differences were found in the morphological parameters cc2, t5 and tSB and the occurrence of multinucleations in the stage of two-cell and four-cell embryos between the group of genetically normal embryos and abnormal embryos. At the same time, significant differences in the morphological parameters cc2, t5 and tSB and the occurrence of multinucleations in the two-cell and four-cell embryo stage were found between the group of genetically normal embryos that led to clinical pregnancy after ET and the group of abnormal embryos. From the morphokinetic data found in the PGT-A group of normal embryos leading to clinical pregnancy, time intervals were determined based on statistical analysis, which should predict embryos with high implantation potential. Out of a total of 218 euploid embryos, which were transferred into the uterus after thawing (single frozen embryo transfer), clinical pregnancy was confirmed in 119 embryos (54.6%). Our results show that according to the morphokinetic parameters (cc2, t5, tSB) and the occurrence of multinucleations during the first two cell divisions, the best euploid embryo for ET can be selected with high probability.
... The average aneuploidy frequency is 0.1− 0.8% per individual chromosome (Yurov et al., 2005), with a cumulative frequency of aneuploidy approaching 10 % in adult human brain (Iourov et al., 2006). Specifically, mosaic gain of chromosome 21 in cells from fetal, children and adults brains range from 0.29 % to 0.42 % (Hultén et al., 2013). In addition, there is an age-related increase in mosaic aneuploidy of chromosome 21 (reported as gain or lose) in human neurons and non-neuronal cells, from 3.2 % in 2-year infants to 5.2 % in 86-year geriatric persons (Rehen et al., 2005). ...
Article
One of the most curious findings emerged from genome-wide studies over the last decade was that genetic mosaicism is a dominant feature of human ageing genomes. The clonal dominance of genetic mosaicism occurs preceding the physiological and physical ageing and associates with propensity for diseases including cancer, Alzheimer’s disease, cardiovascular disease and diabetes. These findings are revolutionizing the ways biologists thinking about health and disease pathogenesis. Among all mosaic mutations in ageing genomes, mosaic chromosomal alterations (mCAs) have the most significant functional consequences because they can produce intercellular genomic variations simultaneously involving dozens to hundreds or even thousands genes, and therefore have most profound effects in human ageing and disease etiology. Here, we provide a comprehensive picture of the landscapes, causes, consequences and rejuvenation of mCAs at multiple scales, from cell to human population, by reviewing data from cytogenetic, genetic and genomic studies in cells, animal models (fly and mouse) and, more frequently, large-cohort populations. A detailed decoding of ageing genomes with a focus on mCAs may yield important insights into the genomic architecture of human ageing, accelerate the risk stratification of age-related diseases (particularly cancers) and development of novel targets and strategies for delaying or rejuvenating human (genome) ageing.
Article
The promises of the cancer genome sequencing project, combined with various -omics technologies, have raised questions about the importance of cancer cytogenetic analyses. It is suggested that DNA sequencing provides high resolution, speed, and automation, potentially replacing cytogenetic testing. We disagree with this reductionist prediction. On the contrary, various sequencing projects have unexpectedly challenged gene theory and highlighted the importance of the genome or karyotype in organizing gene network interactions. Consequently, profiling the karyotype can be more meaningful than solely profiling gene mutations, especially in cancer where karyotype alterations mediate cellular macroevolution dominance. In this chapter, recent studies that illustrate the ultimate importance of karyotype in cancer genomics and evolution are briefly reviewed. In particular, the long-ignored non-clonal chromosome aberrations or NCCAs are linked to genome or chromosome instability, genome chaos is linked to genome reorganization under cellular crisis, and the two-phased cancer evolution reconciles the relationship between genome alteration-mediated punctuated macroevolution and gene mutation-mediated stepwise microevolution. By further synthesizing, the concept of karyotype coding is discussed in the context of information management. Altogether, we call for a new era of cancer cytogenetics and cytogenomics, where an array of technical frontiers can be explored further, which is crucial for both basic research and clinical implications in the cancer field.
Article
Full-text available
Genomic structural variants (SVs) are abundant in humans, differing from other forms of variation in extent, origin and functional impact. Despite progress in SV characterization, the nucleotide resolution architecture of most SVs remains unknown. We constructed a map of unbalanced SVs (that is, copy number variants) based on whole genome DNA sequencing data from 185 human genomes, integrating evidence from complementary SV discovery approaches with extensive experimental validations. Our map encompassed 22,025 deletions and 6,000 additional SVs, including insertions and tandem duplications. Most SVs (53%) were mapped to nucleotide resolution, which facilitated analysing their origin and functional impact. We examined numerous whole and partial gene deletions with a genotyping approach and observed a depletion of gene disruptions amongst high frequency deletions. Furthermore, we observed differences in the size spectra of SVs originating from distinct formation mechanisms, and constructed a map of SV hotspots formed by common mechanisms. Our analytical framework and SV map serves as a resource for sequencing-based association studies.
Article
Full-text available
Single cell genomics has made increasingly significant contributions to our understanding of the role that somatic genome variations play in human neuronal diversity and brain diseases. Studying intercellular genome and epigenome variations has provided new clues to the delineation of molecular mechanisms that regulate development, function and plasticity of the human central nervous system (CNS). It has been shown that changes of genomic content and epigenetic profiling at single cell level are involved in the pathogenesis of neuropsychiatric diseases (schizophrenia, mental retardation (intellectual/leaning disability), autism, Alzheimer's disease etc.). Additionally, several brain diseases were found to be associated with genome and chromosome instability (copy number variations, aneuploidy) variably affecting cell populations of the human CNS. The present review focuses on the latest advances of single cell genomics, which have led to a better understanding of molecular mechanisms of neuronal diversity and neuropsychiatric diseases, in the light of dynamically developing fields of systems biology and "omics".
Article
With increasingly effective medical interventions for congenital heart disease and leukemia, more individuals with Down syndrome (DS) are living into adulthood and old age. To enable children and adults with DS to be healthy and able to function well and live life fully, we need to be knowledgeable about the plethora of medical problems that are possible. In individuals with DS, each system has the potential of some or several types of medical problems that may require constant surveillance such as celiac disease or monitoring such as thyroid disease. These disorders may be more prevalent at different ages, such as arthropathy of DS, or constantly a potential issue, such as atlantoaxial subluxation. This chapter describes by system the multitude of potential medical problems that individuals with DS have an increased chance of developing at different ages.
Article
Structural variations are among the most frequent interindividual genetic differences in the human genome. The frequency and distribution of de novo somatic structural variants in normal cells is, however, poorly explored. Using age-stratified cohorts of 318 monozygotic (MZ) twins and 296 single-born subjects, we describe age-related accumulation of copy-number variation in the nuclear genomes in vivo and frequency changes for both megabase- and kilobase-range variants. Megabase-range aberrations were found in 3.4% (9 of 264) of subjects ≥60 years old; these subjects included 78 MZ twin pairs and 108 single-born individuals. No such findings were observed in 81 MZ pairs or 180 single-born subjects who were ≤55 years old. Recurrent region- and gene-specific mutations, mostly deletions, were observed. Longitudinal analyses of 43 subjects whose data were collected 7-19 years apart suggest considerable variation in the rate of accumulation of clones carrying structural changes. Furthermore, the longitudinal analysis of individuals with structural aberrations suggests that there is a natural self-removal of aberrant cell clones from peripheral blood. In three healthy subjects, we detected somatic aberrations characteristic of patients with myelodysplastic syndrome. The recurrent rearrangements uncovered here are candidates for common age-related defects in human blood cells. We anticipate that extension of these results will allow determination of the genetic age of different somatic-cell lineages and estimation of possible individual differences between genetic and chronological age. Our work might also help to explain the cause of an age-related reduction in the number of cell clones in the blood; such a reduction is one of the hallmarks of immunosenescence.
Article
Somatic mosaicism is the result of postzygotic de novo mutation occurring in a portion of the cells making up an organism. Structural genetic variation is a very heterogeneous group of changes, in terms of numerous types of aberrations that are included in this category, involvement of many mechanisms behind the generation of structural variants, and because structural variation can encompass genomic regions highly variable in size. Structural variation rapidly evolved as the dominating type of changes behind human genetic diversity, and the importance of this variation in biology and medicine is continuously increasing. In this review, we combine the evidence of structural variation in the context of somatic cells. We discuss the normal and disease-related somatic structural variation. We review the recent advances in the field of monozygotic twins and other models that have been studied for somatic mutations, including other vertebrates. We also discuss chromosomal mosaicism in a few prime examples of disease genes that contributed to understanding of the importance of somatic heterogeneity. We further highlight challenges and opportunities related to this field, including methodological and practical aspects of detection of somatic mosaicism. The literature devoted to interindividual variation versus papers reporting on somatic variation suggests that the latter is understudied and underestimated. It is important to increase our awareness about somatic mosaicism, in particular, related to structural variation. We believe that further research of somatic mosaicism will prove beneficial for better understanding of common sporadic disorders.
Article
Chromosomal imbalances can result from numerical or structural anomalies. Numerical chromosomal abnormalities are often referred to as aneuploid conditions. This article focuses on the occurrence of constitutional and acquired autosomal aneuploidy in humans. Topics covered include frequency, mosaicism, phenotypic findings, and etiology. The article concludes with a consideration of anticipated advances that might allow for the development of screening tests and/or lead to improvements in our understanding and management of the role that aneuploidy plays in the aging process and acquisition of age-related and constitutional conditions.
Article
Conventional karyotyping detects chromosomal anomalies in up to 35% of pregnancies with fetal ultrasound anomalies, depending on the number and type of these anomalies. Extensive experience gained in the past decades has shown that prenatal karyotyping is a robust technique which can detect the majority of germline chromosomal anomalies. For most of these anomalies the phenotype is known. In postnatal diagnosis of patients with congenital anomalies and intellectual disability, array-CGH/SNP array has become the first-tier investigation. The higher abnormality detection yield and its amenability to automation renders array-CGH also suitable for prenatal diagnosis. As both findings of unclear significance and unexpected findings may be detected, studies on the outcome of array-CGH in prenatal diagnosis were initially performed retrospectively. Recently, prospective application of array-CGH in pregnancies with ultrasound anomalies, and to a lesser extent in pregnancies referred for other reasons, was studied. Array-CGH showed an increased diagnostic yield compared to karyotyping, varying from 1-5%, depending on the reason for referral. Knowledge of the spectrum of array-CGH anomalies detected in the prenatal setting will increase rapidly in the years to come, thus facilitating pre- and posttest counseling. Meanwhile, new techniques like non-invasive prenatal diagnosis are emerging and will claim their place. In this review, we summarize the outcome of studies on prenatal array-CGH, the clinical relevance of differences in detection rate and range as compared to standard karyotyping, and reflect on the future integration of new molecular techniques in the workflow of prenatal diagnosis.
Article
A December 2010 meeting, "Down Syndrome: National Conference on Patient Registries, Research Databases, and Biobanks," was jointly sponsored by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) at the National Institutes of Health (NIH) in Bethesda, MD, and the Global Down Syndrome Foundation (GDSF)/Linda Crnic Institute for Down Syndrome based in Denver, CO. Approximately 70 attendees and organizers from various advocacy groups, federal agencies (Centers for Disease Control and Prevention, and various NIH Institutes, Centers, and Offices), members of industry, clinicians, and researchers from various academic institutions were greeted by Drs. Yvonne Maddox, Deputy Director of NICHD, and Edward McCabe, Executive Director of the Linda Crnic Institute for Down Syndrome. They charged the participants to focus on the separate issues of contact registries, research databases, and biobanks through both podium presentations and breakout session discussions. Among the breakout groups for each of the major sessions, participants were asked to generate responses to questions posed by the organizers concerning these three research resources as they related to Down syndrome and then to report back to the group at large with a summary of their discussions. This report represents a synthesis of the discussions and suggested approaches formulated by the group as a whole.
Article
Transient leukemia (TL), defined by circulating nonlymphoid blast in the peripheral blood, occurs in approximately 10% of infants with constitutional trisomy 21 (Down syndrome). The TL phenotype may also occur in newborns who do not have clinical signs of Down syndrome but nonconstitutional trisomy 21 due to mosaicism. We report the cases of 3 infants to highlight the specific parental concerns, diagnostic and counseling requirements for this group of infants and their families and suggest a practical approach to diagnosis, follow-up, anticipatory guidance, and discussion of prognosis for families with newborns diagnosed with TL and nonconstitutional trisomy 21.