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Impedance of cation-coupled electron transfer reaction: Theoretical description of one pathway process

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... The AIC gives us a strategy to avoid under-and over-fitting. [42,43] Underfitting occurs when the fitted expression fails to identify effects that were supported by the data, i. e., high bias -low variance. In contrast, overfitting occurs when the fitted expression contains spurious variables and is characterised by low bias-high variance. ...
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Different strategies can be used to acquire dynamic impedance spectra during a cyclic voltammetry experiment. The spectra are then analyzed by fitting them with a model using a weighted non‐linear least‐squares minimization algorithm. The choice of the weighting factors is not trivial and influences the value of the extracted parameters. At variance with the classic EIS, dynamic impedance measurements are performed under non‐stationary conditions, making them typically more affected by the noise of the voltage and current amplifiers. Under the assumption that the noise in the voltage and current signals have a constant variance and that it is uncorrelated among the samples, we calculate an expression for the expected variance of the error of the resulting immittances, which considers the specific procedure used to extract the spectra under the time‐varying nature of the measurements. The calculated variance of the error is then used as a rigorous way to evaluate the weighting factors of the least‐squares minimization, assuming that the fitted model is ideally exact and that there are no systematic errors. By exploring two classical electrochemical systems and fitting the measured spectra with a transfer function measurement model, namely with the Padé approximants, we show that the variance evaluated with our method captures the frequency dependence of the resulting residuals and can be used for reliably performing the complex non‐linear least‐squares fitting procedure.
... Particularly, the results obtained when the cell was discharged under various conditions of the electrode indicated that the impedance of both the positive and the negative electrodes could not be overlooked. In another relevant theoretical analysis of impedance under potentiostatic conditions, the Slepski group aimed to describe the impedance of a cation electron-coupled transfer reaction (66). They found that in the potentiodynamic mode, the polarization depended on the resistance of the potential scan rate and adsorption capacity. ...
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Iron(III) protoporphyrin IX (Fe(III)PP) and iron(III) hematoporphyrin (Fe(III)HP) were selectively and covalently attached to dimercaptoalkane-modified gold electrodes. Reaction of their vinyl or hydroxyethyl groups with the surface-immobilized thiols produced thioether linkages, reminiscent of the heme macrocycle attachment in c-type cytochromes. Cyclic voltammetry revealed reversible electrochemistry of self-assembled monolayers (SAMs) of FePPs and FeHPs on the thiol-modified gold substrates. The surface coverage estimated from the charges transferred corresponds to 30% of a monolayer. The heterogeneous rate constant of electron transfer between the Fe(III)PPs and the gold substrate decreases exponentially with the length of the spacer, demonstrating a value of 1.0 A-1 for the tunneling length coefficient, beta. At pH 8, a linear increase of the formal redox potential (Eo`) with the length of the linker was also observed. This suggests that in the film, there is a close contact between the porphyrins and the alkane SAM: the Eo` is affected by the drop of the electrostatic potential from the electrode to the surface of the alkane SAM, and also that there is a strong ion pairing of the Fe(III)PPs in the film with the anions of the solution. The Eo` of Fe(III)PPs in the SAM shows a strong and complex dependency on the pH of the solution, explained by variations in the coordination of the iron, involving hydroxyl ions, water, and eventually dioxygen molecules. Interactions of the iron with either functional groups present at the surface of the substrate or with the propionate groups attached to the porphyrin ring, do not appear to be involved in the electronproton transfer coupling mechanisms.
Article
Room temperature ionic liquid N-butylpyridinium hexafluorophosphate (BPPF6) was used as a binder to construct a new carbon ionic liquid electrode (CILE), which exhibited enhanced electrochemical behavior as compared with the traditional carbon paste electrode with paraffin. By using the CILE as the basal electrode, hemoglobin (Hb) was immobilized on the surface of the CILE with nano-CaCO3 and Nafion film step by step. The Hb molecule in the film kept its native structure and showed good electrochemical behavior. In pH 7.0 Britton-Robinson (B-R) buffer solution, a pair of well-defined, quasi-reversible cyclic voltammetric peaks appeared with cathodic and anodic peak potentials located at -0.444 and -0.285 V (vs SCE), respectively, and the formal potential (E degrees') was at -0.365 V, which was the characteristic of Hb Fe(III)/Fe(II) redox couples. The formal potential of Hb shifted linearly to the increase of buffer pH with a slope of -50.6 mV pH-1, indicating that one electron transferred was accompanied with one proton transportation. Ultraviolet-visible (UV-vis) and Fourier transform infrared (FT-IR) spectroscopy studies showed that Hb immobilized in the Nafion/nano-CaCO3 film still remained its native arrangement. The Hb modified electrode showed an excellent electrocatalytic behavior to the reduction of H2O2, trichloroacetic acid (TCA), and NaNO2.
Article
Proton-coupled electron transfers (PCETs) are omnipresent in natural and artificial chemical processes. Given the contemporary challenges associated with energy conversion, pollution abatement, and the development of high-performance sensors, a greater understanding of the mechanisms that underlie the practical efficiency of PCETs is a timely research topic. In contrast to hydrogen-atom transfers, proton and electron transfers involve different centers in PCET reactions. The reaction may go through an electron- or proton-transfer intermediate, giving rise to the electron-proton transfer (EPT) and the proton-electron transfer (PET) pathways. When the proton and electron transfers are concerted (the CPET pathway), the high-energy intermediates of the stepwise pathways are bypassed, although this thermodynamic benefit may have a kinetic cost. The primary task of kinetics-based mechanism analysis is therefore to distinguish the three pathways, quantifying the factors that govern the competition between them, which requires modeling of CPET reactivity. CPET models of varying sophistication have appeared, but the large number of parameters involved and the uncertainty of the quantum chemical calculations they may have to resort to make experimental confrontation and inspiration a necessary component of model testing and refinement. Electrochemical PCETs are worthy of particular attention, if only because most applications in which PCET mechanisms are operative involve collection or injection of electricity through electrodes. More fundamentally, changing the electrode potential is an easy and continuous means of varying the driving force of the reaction, whereas the current flowing through the electrode is a straightforward measure of its rate. Consequently, the current-potential response in nondestructive techniques (such as cyclic voltammetry) can be read as an activation-driving force relationship, provided the contribution of diffusion has been taken into account. Intrinsic properties (properties at zero driving force) are consequently a natural outcome of the electrochemical approach. In this Account, we begin by examining the modeling of CPET reactions and then describe illustrating experimental examples inspired by two biological systems, photosystem II and superoxide dismutase. One series of studies examined the oxidation of phenols with, as proton acceptor, either an attached nitrogen base or water (in water as solvent). Another addressed interconversion of aquo-hydroxo-oxo couples of transition metal complexes, using osmium complexes as prototypes. Finally, the reduction of superoxide ion, which is closely related to its dismutation, allowed the observation and rationalization of the remarkable properties of water as a proton donor. Water is also an exceptional proton acceptor in the oxidation of phenols, requiring very small reorganization energies, both in the electrochemical and homogeneous cases. These varied examples reveal general features of PCET reactions that may serve as guidelines for future studies, suggesting that research emphasis might be profitably directed toward new biological systems on the one hand and on the role of hydrogen bonding and hydrogen-bonded environments (such as water or proteins) on the other.
Article
We describe a novel technique for measuring electrochemical impedance, in which the electrode potential is ramped to a desired bias potential and a small potential step is applied to the working electrode after a short time delay. Fourier transform of the first derivative of the current signal thus obtained provides ac currents in the frequency domain, which allows the computation of impedances of the electrode/electrolyte interface in the whole frequency range. A home-built data acquisition system for these measurements and the results obtained therefrom were used for the measurements. The advantage of the technique includes an extremely short time of less than 1 ms for impedance measurements in the whole frequency region while equilibrium conditions of the electrochemical system are being maintained before and after the measurements, among many others. This technique is expected to revolutionize electrochemical measurements and to find important applications such as in situ measurements during battery cycling, corrosion testing, and other electrochemical experiments.
Article
According to current estimates, the photosynthetic water oxidase functions with a quite restricted driving force. This emphasizes the importance of the catalytic mechanisms in this enzyme. The general problem of coupling electron and proton transfer is discussed from this viewpoint and it is argued that 'weak coupling' is preferable to 'strong coupling'. Weak coupling can be achieved by facilitating deprotonation either before (proton-first path) or after (electron-first path) the oxidation step. The proton-first path is probably relevant to the oxidation of tyrosine Y(Z) by P-680. Histidine D1-190 is believed to play a key role as a proton acceptor facilitating Y(Z) deprotonation. The pK(a) of an efficient proton acceptor is submitted to conflicting requirements, since a high pK(a) favors proton transfer from the donor, but also from the medium. H-bonding between Y(Z) and His, together with the Coulombic interaction between negative tyrosinate and positive imidazolium, are suggested to play a decisive role in alleviating these constraints. Current data and concepts on the coupling of electron and proton transfer in the water oxidase are discussed.
Article
This Account presents a theoretical formulation for proton-coupled electron transfer reactions. The active electrons and transferring protons are treated quantum mechanically, and the free energy surfaces are obtained as functions of collective solvent coordinates corresponding to the proton and electron transfer reactions. Rate expressions have been derived in the relevant limits, and methodology for including the dynamical effects of the solvent and protein has been developed. This theoretical framework allows predictions of rates, mechanisms, and kinetic isotope effects for proton-coupled electron transfer reactions.
Article
The reaction center Photosystem II is a key component of the most successful solar energy converting machinery on earth: the oxygenic photosynthesis. Photosystem II uses light to drive the reduction of plastoquinone and the oxidation of water. Water-oxidation is catalyzed by a manganese cluster and gives the organism an abundant source of electrons. The principles of photosynthesis have inspired chemists to mimic these reactions in artificial molecular assemblies. Synthetic light-harvesting antennae and light-induced charge separation systems have been demonstrated by several groups. More recently, there has been an increasing effort to mimic Photosystem II by coupling light-driven charge separation to water oxidation, catalyzed by synthetic manganese complexes.
Article
This minireview addresses questions on the mechanism of oxidative water cleavage with special emphasis on the coupling of electron (ET) and proton transfer (PT) of each individual redox step of the reaction sequence and on the mode of O-O bond formation. The following topics are discussed: (1) the multiphasic kinetics of Y(Z)(ox) formation by P680(+*) originate from three different types of rate limitations: (i) nonadiabatic electron transfer for the "fast" ns reaction, (ii) local "dielectric" relaxation for the "slow" ns reaction, and (iii) "large-scale" proton shift for the micros kinetics; (2) the ET/PT-coupling mode of the individual redox transitions within the water oxidizing complex (WOC) driven by Y(Z)(ox) is assumed to depend on the redox state S(i): the oxidation steps of S(0) and S(1) comprise separate ET and PT pathways while those of S(2) and S(3) take place via proton-coupled electron transfer (PCET) analogous to Jerry Babcock's hydrogen atom abstractor model [Biochim. Biophys. Acta, 1458 (2000) 199]; (3) S(3) is postulated to be a multistate redox level of the WOC with fast dynamic equilibria of both redox isomerism and proton tautomerism. The primary event in the essential O-O bond formation is the population of a state S(3)(P) characterized by an electronic configuration and nuclear geometry that corresponds with a complexed hydrogen peroxide; (4) the peroxidic type S(3)(P) is the entatic state for formation of complexed molecular oxygen through S(3) oxidation by Y(Z)(ox); and (5) the protein matrix itself is proposed to exert catalytic activity by functioning as "PCET director". The WOC is envisaged as a supermolecule that is especially tailored for oxidative water cleavage and acts as a molecular machine.
Article
Proton-coupled electron transfer (PCET) reactions involve the concerted transfer of an electron and a proton. Such reactions play an important role in many areas of chemistry and biology. Concerted PCET is thermochemically more favorable than the first step in competing consecutive processes involving stepwise electron transfer (ET) and proton transfer (PT), often by >=1 eV. PCET reactions of the form X-H + Y X + H-Y can be termed hydrogen atom transfer (HAT). Another PCET class involves outersphere electron transfer concerted with deprotonation by another reagent, Y+ + XH-B Y + X-HB+. Many PCET/HAT rate constants are predicted well by the Marcus cross relation. The cross-relation calculation uses rate constants for self-exchange reactions to provide information on intrinsic barriers. Intrinsic barriers for PCET can be comparable to or larger than those for ET. These properties are discussed in light of recent theoretical treatments of PCET.
Article
In aerobic organisms, cellular respiration involves electron transfer to oxygen through a series of membrane-bound protein complexes. The process maintains a transmembrane electrochemical proton gradient that is used, for example, in the synthesis of ATP. In mitochondria and many bacteria, the last enzyme complex in the electron transfer chain is cytochrome c oxidase (CytcO), which catalyses the four-electron reduction of O2 to H2O using electrons delivered by a water-soluble donor, cytochrome c. The electron transfer through CytcO, accompanied by proton uptake to form H2O drives the physical movement (pumping) of four protons across the membrane per reduced O2. So far, the molecular mechanism of such proton pumping driven by electron transfer has not been determined in any biological system. Here we show that proton pumping in CytcO is mechanistically coupled to proton transfer to O2 at the catalytic site, rather than to internal electron transfer. This scenario suggests a principle by which redox-driven proton pumps might operate and puts considerable constraints on possible molecular mechanisms by which CytcO translocates protons.
Article
The goal of artificial photosynthesis is to use the energy of the sun to make high-energy chemicals for energy production. One approach, described here, is to use light absorption and excited-state electron transfer to create oxidative and reductive equivalents for driving relevant fuel-forming half-reactions such as the oxidation of water to O2 and its reduction to H2. In this "integrated modular assembly" approach, separate components for light absorption, energy transfer, and long-range electron transfer by use of free-energy gradients are integrated with oxidative and reductive catalysts into single molecular assemblies or on separate electrodes in photelectrochemical cells. Derivatized porphyrins and metalloporphyrins and metal polypyridyl complexes have been most commonly used in these assemblies, with the latter the focus of the current account. The underlying physical principles--light absorption, energy transfer, radiative and nonradiative excited-state decay, electron transfer, proton-coupled electron transfer, and catalysis--are outlined with an eye toward their roles in molecular assemblies for energy conversion. Synthetic approaches based on sequential covalent bond formation, derivatization of preformed polymers, and stepwise polypeptide synthesis have been used to prepare molecular assemblies. A higher level hierarchial "assembly of assemblies" strategy is required for a working device, and progress has been made for metal polypyridyl complex assemblies based on sol-gels, electropolymerized thin films, and chemical adsorption to thin films of metal oxide nanoparticles.
Article
A new attempt to obtain electron transfer kinetic parameters at an electrified electrode/electrolyte interface using Fourier transform electrochemical impedance spectroscopic (FTEIS) analyses of small potential step chronoamperometric currents is presented. The kinetic parameters thus obtained allowed mass transport free voltammograms to be constructed in an overpotential region, where the diffusion limits the electron transfer reaction, using the Butler-Volmer (B-V) relation. The B-V voltammograms clearly distinguish electrode reactions that are not much different in their electron transfer kinetic parameters, thus showing very similar normal linear sweep voltammetric (SCV) behaviors. Electrochemical reduction of p-benzoquinone, which displays nearly the same SCV responses at a gold electrode regardless whether the electrode is covered by a thiolated beta-cyclodextrin self-assembled monolayer, was taken as an example for the demonstration. The results show that the two voltametrically similar systems display very different electron transfer characteristics.
Article
Proton-coupled electron-transfer reactions are central to enzymatic mechanism in many proteins. In several enzymes, essential electron-transfer reactions involve oxidation and reduction of tyrosine side chains. For these redox-active tyrosines, proton transfer couples with electron transfer, because the phenolic pKA of the tyrosine is altered by changes in the tyrosine redox state. To develop an experimentally tractable peptide system in which the effect of proton and electron coupling can be investigated, we have designed a novel amino acid sequence that contains one tyrosine residue. The tyrosine can be oxidized by ultraviolet photolysis or electrochemical methods and has a potential cross-strand interaction with a histidine residue. NMR spectroscopy shows that the peptide forms a beta-hairpin with several interstrand dipolar contacts between the histidine and tyrosine side chains. The effect of the cross-strand interaction was probed by electron paramagnetic resonance and electrochemistry. The data are consistent with an increase in histidine pKA when the tyrosine is oxidized; the effect of this thermodynamic coupling is to increase tyrosyl radical yield at low pH. The coupling mechanism is attributed to an interstrand pi-cation interaction, which stabilizes the tyrosyl radical. A similar interaction between histidine and tyrosine in enzymes provides a regulatory mechanism for enzymatic electron-transfer reactions.
Article
The molecular mechanism of the monooxygenase (phenolase) activity of type 3 copper proteins has been examined in detail both in the model systems and in the enzymatic systems. The reaction of a side-on peroxo dicopper(II) model compound ( A) and neutral phenols proceeds via a proton-coupled electron-transfer (PCET) mechanism to generate phenoxyl radical species, which collapse each other to give the corresponding C-C coupling dimer products. In this reaction, a bis(mu-oxo)dicopper(III) complex ( B) generated by O-O bond homolysis of A is suggested to be a real active species. On the other hand, the reaction of lithium phenolates (deprotonated form of phenols) with the same side-on peroxo dicopper(II) complex proceeds via an electrophilic aromatic substitution mechanism to give the oxygenated products (catechols). The mechanistic difference between these two systems has been discussed on the basis of the Marcus theory of electron transfer and Hammett analysis. Mechanistic details of the monooxygenase activity of tyrosinase have also been examined using a simplified enzymatic reaction system to demonstrate that the enzymatic reaction mechanism is virtually the same as that of the model reaction, that is, an electrophilic aromatic substitution mechanism. In addition, the monooxygenase activity of the oxygen carrier protein hemocyanin has been explored for the first time by employing urea as an additive in the reaction system. In this case as well, the ortho-hydroxylation of phenols to catechols has been demonstrated to involve the same ionic mechanism.
Article
All higher life forms use oxygen and respiration as their primary energy source. The oxygen comes from water by solar-energy conversion in photosynthetic membranes. In green plants, light absorption in photosystem II (PSII) drives electron-transfer activation of the oxygen-evolving complex (OEC). The mechanism of water oxidation by the OEC has long been a subject of great interest to biologists and chemists. With the availability of new molecular-level protein structures from X-ray crystallography and EXAFS, as well as the accumulated results from numerous experiments and theoretical studies, it is possible to suggest how water may be oxidized at the OEC. An integrated sequence of light-driven reactions that exploit coupled electron-proton transfer (EPT) could be the key to water oxidation. When these reactions are combined with long-range proton transfer (by sequential local proton transfers), it may be possible to view the OEC as an intricate structure that is "wired for protons".
Article
Some of the important conclusions reached in this analysis of PCET are summarized below. The sections in which they are discussed are also cited. (1) PCET describes reactions in which there is a change in both electron and proton content between reactants and products. It originates from the influence of changes in electron content on acid-base properties and provides a molecular-level basis for energy transduction between proton transfer and electron transfer (section 1). (2) Coupled electron-proton transfer or EPT is defined as an elementary step in which electrons and protons transfer from different orbitals on the donor to different orbitals on the acceptor. There is (usually) a clear distinction between EPT and H-atom transfer (HAT) or hydride transfer, in which the transferring electrons and proton come from the same bond. Hybrid mechanisms exist in which the elementary steps are different for the reaction partners (sections 5.1 and 5.2). (3) EPT pathways such as PhO*/PhOH exchange have much in common with HAT pathways in that electronic coupling is significant, comparable to the reorganization energy with HDA ∼ λ. (4) Multiple-Site Electron-Proton Transfer (MS-EPT) is an elementary step in which an electron-proton donor transfers electrons and protons to different acceptors, or an electron-proton acceptor accepts electrons and protons from different donors. It exploits the long-range nature of electron transfer while providing for the short-range nature of proton transfer (section 5.1). (5) A variety of EPT pathways exist, creating a taxonomy based on what is transferred, e.g., le-12H+ WEPT (section 5.1). (6) PCET achieves "redox potential leveling" between sequential couples and the buildup of multiple redox equivalents, which is of importance in multielectron catalysis (section 2. 1). (7) There are many examples of PCET and pH-dependent redox behavior in metal complexes, in organic and biological molecules, in excited states, and on surfaces (section 2). (8) Changes in pH can be used to induce electron transfer through films and over long distances in molecules. Changes in pH, induced by local electron transfer, create pH gradients and a driving force for long-range proton transfer in Photosysem 11 and through other biological membranes (sections 3 and 7.2). (9) In EPT, simultaneous transfer of electrons and protons occurs on time scales short compared to the periods of coupled vibrations and solvent modes. A theory for EPT has been developed which rationalizes rate constants and activation barriers, includes temperature- and driving force (ΔG)-dependences implicitly, and explains kinetic isotope effects. The distance-dependence of EPT is dominated by the short range nature of proton transfer, with electron transfer being far less demanding (sections 4.2 and 5). (10) Changes in external pH do not affect an EPT elementary step. Solvent molecules or buffer components can act as proton donor acceptors, but individual H2O molecules are neither good bases (pKa(H3)O+) = - 1.74) nor good acids (pK(H2O) = 15.7) (section 5.5.3). (11) There are many examples of mechanisms in chemistry, in biology, on surfaces, and in the gas phase which utilize EPT (sections 6 and 7). (12) PCET and EPT play critical roles in the oxygen evolving complex (OEC) of Photosystem Il and other biological reactions by decreasing driving force and avoiding high-energy intermediates (section 7.2).