Novel Xylanase from a Holstein Cattle Rumen Metagenomic Library and Its Application in Xylooligosaccharide and Ferulic Acid Production from Wheat Straw

Journal of Agricultural and Food Chemistry (Impact Factor: 2.91). 11/2012; 60(51). DOI: 10.1021/jf302337w
Source: PubMed


A novel gene fragment containing a xylanase was identified from a Holstein cattle rumen metagenomic library. The novel xylanase (Xyln-SH1) belonged to the glycoside hydrolase family 10 (GH10) and exhibited a maximum of 44% identity to the glycoside hydrolase from Clostridium thermocellum ATCC 27405. Xyln-SH1 was heterologously expressed, purified and characterized. A high level of activity was obtained under the optimum conditions of pH 6.5 and 40°C. A substrate utilization study indicated that Xyln-SH1 was cellulase-free and strictly specific to xylan from softwood. The synergistic effects of Xyln-SH1 and feruloyl esterase (FAE-SH1) were observed for the release of xylooligosaccharides (XOS) and ferulic acid (FA) from wheat straw. In addition, a high dose of Xyln-SH1 alone was observed to improve the release of FA from wheat straw. These features suggest that this enzyme has substantial potential to improve biomass degradation and industrial applications.

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    • "The properties like thermostability and tolerance to extreme pH conditions are inevitable for such purposes. The studies of Chang et al. [30], Cheng et al. [31], and Jeong et al. [32] yielded significant results with xylanases having immense biotechnological applications for lignocellulosic deconstruction and bioethanol production. Moreover, Verma et al. also isolated a novel metagenomic xylanase from compost-soil metagenome that shows alkali stability and thermostability, thus bearing a potential application in paper and pulp industry in pulp bleaching [33]. "
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    ABSTRACT: Metagenomics deals with the isolation of genetic material directly recovered from environmental samples. Metagenomics as an approach has emerged over the past two decades to elucidate a host of microbial communities inhabiting a specific niche with the goal of understanding their genetic diversity, population structure, and ecological role played by them. A number of new and novel molecules with significant functionalities and applications have been identified through this approach. In fact, many investigators are engaged in this field to unlock the untapped genetic resources with funding from governments sector. The sustainable economic future of modern industrialized societies requires the development of novel molecules, enzymes, processes, products, and applications. Metagenomics can also be applied to solve practical challenges in the field of medicine, agriculture, sustainability, and ecology. Metagenomics promises to provide new molecules and novel enzymes with diverse functions and enhanced features compared to the enzymes from the culturable microorganisms. Besides the application of metagenomics for unlocking novel biocatalysts from nature, it also has found applications in fields as diverse as bioremediation, personalized medicine, xenobiotic metabolism, and so forth.
    Full-text · Article · Aug 2014
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    • "Novel xylanases with designed characteristics for biotechnological application have been identified by metagenomics approaches [14]–[16]. A novel GH11 was retrieved from a compost-soil metagenome with thermo-alkali-stability properties, which are of great interest for paper and pulp industry [17]. "
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    ABSTRACT: Metagenomics has been widely employed for discovery of new enzymes and pathways to conversion of lignocellulosic biomass to fuels and chemicals. In this context, the present study reports the isolation, recombinant expression, biochemical and structural characterization of a novel endoxylanase family GH10 (SCXyl) identified from sugarcane soil metagenome. The recombinant SCXyl was highly active against xylan from beechwood and showed optimal enzyme activity at pH 6,0 and 45°C. The crystal structure was solved at 2.75 Å resolution, revealing the classical (β/α)8-barrel fold with a conserved active-site pocket and an inherent flexibility of the Trp281-Arg291 loop that can adopt distinct conformational states depending on substrate binding. The capillary electrophoresis analysis of degradation products evidenced that the enzyme displays unusual capacity to degrade small xylooligosaccharides, such as xylotriose, which is consistent to the hydrophobic contacts at the +1 subsite and low-binding energies of subsites that are distant from the site of hydrolysis. The main reaction products from xylan polymers and phosphoric acid-pretreated sugarcane bagasse (PASB) were xylooligosaccharides, but, after a longer incubation time, xylobiose and xylose were also formed. Moreover, the use of SCXyl as pre-treatment step of PASB, prior to the addition of commercial cellulolytic cocktail, significantly enhanced the saccharification process. All these characteristics demonstrate the advantageous application of this enzyme in several biotechnological processes in food and feed industry and also in the enzymatic pretreatment of biomass for feedstock and ethanol production.
    Full-text · Article · Jul 2013 · PLoS ONE
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    ABSTRACT: This paper reports the production and characterization of crude xylanase from the newly isolated Humicola sp. Ly01. The highest (41.8 U/ml) production of the crude xylanase was obtained under the optimized conditions (w/v): 0.5% wheat bran, 0.2% KH2PO4, and 0.5% peptone; initial pH 7.0; incubation time 72 h; 30oC; and 150 rpm. A considerable amount of the crude xylanase was induced using hulless barley bran or soybean meal as the carbon source, but a small amount of the enzyme was produced when supplementary urea was used as the nitrogen source to wheat bran. The crude xylanase showed apparent optimal cellulase-free xylanase activity at 60oC and pH 6.0, more than 71.8% of the maximum xylanase activity in 3.0–30.0% (v/v) ethanol and more than 82.3% of the initial xylanase activity after incubation in 3.0–30.0% (v/v) ethanol at 30oC for 2 h. The crude xylanase was moderately resistant to both acid and neutral protease digestion, and released 7.9 and 10.9 micronmol/ml reducing sugar from xylan in the simulated gastric and intestinal fluids, respectively. The xylooligosaccharides were the main products of the hydrolysis of xylan by the crude xylanase. These properties suggested the potential of the crude enzyme for being applied in the animal feed industry, xylooligosaccharides production, and high-alcohol conditions such as ethanol production and brewing.
    No preview · Article · May 2013 · Journal of Microbiology and Biotechnology
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