ArticlePDF Available

No evidence of association between a functional polymorphism in the MTHFR gene and childhood-onset mood disorders

Authors:
0.07 in our Hispanic-Caucasian sample and in Wong
et al. In the HapMap Caucasian sample, this marker
had a minor allele frequency of 0.1. For rs1880916,
Wong et al. found a minor allele frequency of 0.12,
compared to 0.17 in our sample, whereas the minor
allele frequency was 0.2 in the HapMap Caucasian
sample. These data suggest that the samples in both
studies are similar.
Acknowledgments
This work was supported by the National Institute of
Mental Health to SPH (MH072802), the State of New
York (PJM) and Grant CA 94919 (SLS) from the
National Cancer Institute. STAR*D was funded by
NIMH via contract (N01MH90003) to the University
of Texas Southwestern Medical Center at Dallas
(A John Rush, PI).
KS Teranishi
1
, SL Slager
2
, H Garriock
1
, JB Kraft
1
,
EJ Peters
1
, MS Reinalda
2
, GD Jenkins
2
,
PJ McGrath
3
and SP Hamilton
1
1
Department of Psychiatry and Institute for Human
Genetics, University of California, San Francisco, CA,
USA;
2
Department of Health Sciences Research, Mayo
Clinic, Rochester, MN, USA and
3
Department of
Psychiatry, New York State Psychiatric Institute,
Columbia University College of Physicians and
Surgeons, New York, NY, USA
E-mail: SteveH@lppi.ucsf.edu
References
1 Wong ML, Whelan F, Deloukas P, Whittaker P, Delgado M, Cantor
RM et al. Proc Natl Acad Sci USA 2006; 103: 15124–15129.
2 Rush AJ, Fava M, Wisniewski SR, Lavori PW, Trivedi MH, Sackeim
HA et al. Controlled Clin Trials 2004; 25: 119–142.
3 Trivedi MH, Rush AJ, Wisniewski SR, Nierenberg AA, Warden D,
Ritz L et al. Am J Psychiatry 2006; 163: 28–40.
4 Kraft JB, Peters EJ, Slager SL, Jenkins GD, Reinalda MS, McGrath PJ
et al. Biol Psychiatry 2007; 61: 734–742.
No evidence of association
between a functional
polymorphism in the
MTHFR gene and
childhood-onset mood
disorders
Molecular Psychiatry (2007) 12, 1063–1064;
doi:10.1038/sj.mp.4002071
Several lines of evidence implicate the role of folate
pathway in the aetiology of depression. These include
evidence that folic acid has shown promise as an
adjuvant in complimenting antidepressant treatment,
and the 5,10-methylenetetrahydrofolate reductase
(MTHFR) gene has been associated with depression.
1
Further, genome scans for depression, including
early-onset depression, indicate linkage to 1p36.2,
2,3
the location of the MTHFR gene. To investigate the
role of the MTHFR gene in early-onset depression, we
tested a functional polymorphism, C677T, as a risk
factor in a large Hungarian sample of 583 families
with children diagnosed with a mood disorder before
the age of 15.
MTHFR is an enzyme involved in the metabolism
of folic acid, by catalysing the reduction of 5,10-
methylenetetrahydrofolate to 5-methyl tetrahydrofo-
late. This reaction acts as a methyl donor in the
conversion of homocysteine, a product formed during
methylation reactions, to methionine. Methionine is a
precursor for S-adenosyl methionine, an important
enzyme in the catabolism of methylation reactions in
the central nervous system. Impairment in the
conversion of homocysteine into methionine results
in an increase in homocysteine levels, which can be
deleterious through the inhibition of methylation
reactions if left to accumulate.
1
There is a common C677T functional variant in the
MTHFR gene resulting in an amino-acid transition
from alanine to valine. This change leads to a
thermolabile version of MTHFR with reduced enzy-
matic activity.
4
There are a number of studies that
suggest an association between the low-activity allele
(677T) and major depression, however there are also a
number of negative reports.
1
Recently, Lewis et al.
5
performed an association in a large female population
sample and found an association between the MTHFR
677T allele and an increase in self-reported depres-
sion symptoms. To complement their analysis, they
performed a meta-analysis on all previous reports,
finding a combined odds ratio of 1.36 for the 677T
allele in depression, thus indicating that this genetic
variant is a small but significant risk factor for
depression.
For this study, C677T (rs1801133) was genotyped in
583 nuclear families ascertained through a child or
adolescent with a diagnostic and statistical manual of
mental disorders IV diagnosis of a mood disorder
(unipolar or bipolar) before 15 years of age (child-
hood-onset mood disorder). Families consisted of 717
affected children (583 probands and 134 affected
siblings). The recruitment and assessment of this
sample has been described previously.
6
Genotyping
was performed using the TaqMan 5
0
nuclease assay
(Applied Biosystems, Foster City, CA, USA) (ABI
probe ID, C_1202883_20). Transmission disequili-
brium test analysis was performed using TDT phase.
7
Power calculations were permutated by the Quanto
program (http://hydra.usc.edu/gxe). The minor allele
frequency for this marker was 0.35 in this sample,
which is consistent with previous studies and no
deviation from the Hardy–Weinberg equilibrium was
observed.
Letters to the Editor
1063
Molecular Psychiatry
No significant association was observed between
childhood-onset mood disorder and the 677T allele
(T 224: NT 246: w
2
= 1.03 P = 0.31) despite this sample
having 85% power to detect the odds ratio of 1.36
obtained from the recent meta-analysis.
5
Thus, the
results of this study fail to support the conclusion of
the recent meta-analysis.
Inconsistencies in the outcome of investigations
into the association between the 677T allele and
depression could be attributed to the indirect nature
of the pathological mechanism of this polymorphism.
The 677T allele has been found to be associated with
an increase in homocysteine and a decrease in folate,
but both within the normal range. However, under
sub-optimum folate status, the 677T allele is asso-
ciated with increased plasma homocysteine
8
and
global hypomethylation,
9
suggesting the existence of
a gene nutrient interaction.
Elevated homocysteine levels have been associated
with a wide range of phenotypes including dementia,
arteriosclerosis, cardiovasculature disease, cognitive
impairment, as well as depression. Interestingly,
many of these phenotypes are also associated with
the 677T allele.
10
Furthermore, extensive hypomethy-
lation, which is probably a consequence of elevated
homocysteine levels, could have diverse implications
through the random expression of previously quies-
cent genes, and whether or not a change in methyla-
tion status contributes to psychopathology may
depend on individual genetic architecture.
Elevated maternal levels of homocysteine during
pregnancy are associated with premature delivery,
pre-eclampsia and placental damage that may influ-
ence oxygen delivery to the fetus, risk factors
indicated in a number of neuropsychiatric disorders.
Further, a recent report suggested that maternal
homozygosity of the T allele may be associated with
an increase in imprinting defects in their offspring.
11
Thus, we tested for an excess of homozygous 677T
mothers in our sample by comparing the genotype
and allele frequencies of mothers and fathers. We
found no significant difference between these two
groups.
While it is evident that the 677T allele does not
confer risk to the development of childhood-onset
mood disorder in this sample, the presence of an
interaction between folate status and C677T genotype
may explain the previous inconsistent findings in the
literature regarding depression. Consequently, certain
studies may have an enrichment of depressed patients
who are more vulnerable to folate changes, biasing the
association results in specific populations. Another
consideration is the possibility that excess homocys-
teine is contributing to depression related to vascular
dysfunction in older populations.
12
To conclude,
further exploration of this polymorphism and the
interaction with folate status, as well as other
variables, is required in depressed patient popula-
tions. However, the results of this study infer that the
MTHFR genotype is unlikely to be a considerable risk
factor for the development of childhood-onset mood
disorder.
EL Dempster
1
, E Kiss
2
, K Kapornai
2
, G Daro
´
czy
2
,
L Mayer
2
, I Baji
3
, Z Tamas
3
, J Gadoros
3
, JL Kennedy
4
,
A Vetro
´
2
, M Kovacs
5
and CL Barr
1,6
, The International
Consortium for Childhood-Onset Mood Disorders
1
Toronto Western Research Institute, Toronto, ON,
Canada;
2
University of Szeged, Szeged, Hungary;
3
Vadaskert Hospital, Budapest, Hungary;
4
Centre for
Addiction and Mental Health, Toronto, ON, Canada;
5
School of Medicine, University of Pittsburgh,
Pittsburgh, PA, USA and
6
The Hospital for Sick
Children, Toronto, ON, Canada
E-mail: cbarr@uhnres.utoronto.ca
References
1 Paul RT, McDonnell AP, Kelly CB. Hum Psychopharmacol 2004;
19: 477–488.
2 Zubenko GS, Maher B, Hughes III HB, Zubenko WN, Stiffler JS,
Kaplan BB et al. Am J Med Genet B Neuropsychiatr Genet 2003;
123: 1–18.
3 McGuffin P, Knight J, Breen G, Brewster S, Boyd PR, Craddock N
et al. Hum Mol Genet 2005; 14: 3337–3345.
4 Frosst P, Blom HJ, Milos R, Goyette P, Sheppard CA, Matthews RG
et al. Nat Genet 1995; 10: 111–113.
5 Lewis SJ, Lawlor DA, Davey Smith G, Araya R, Timpson N, Day IN
et al. Mol Psychiatry 2006; 11: 352–360.
6 Liu X, Gentzler AL, Tepper P, Kiss E, Kothencne VO, Tamas Z et al.
J Clin Psychiatry 2006; 67: 1442–1450.
7 Dudbridge F. Genet Epidemiol 2003; 25: 115–121.
8 Devlin AM, Clarke R, Birks J, Evans JG, Halsted CH. Am J Clin Nutr
2006; 83: 708–713.
9 Friso S, Choi SW, Girelli D, Mason JB, Dolnikowski GG, Bagley PJ
et al. Proc Natl Acad Sci USA 2002; 99: 5606–5611.
10 Refsum H, Nurk E, Smith AD, Ueland PM, Gjesdal CG, Bjelland I
et al. J Nutr 2006; 136(6 Suppl): 1731S–1740S.
11 Zogel C, Bohringer S, Gross S, Varon R, Buiting K, Horsthemke B.
Eur J Hum Genet 2006; 14: 752–758.
12 Hickie I, Scott E, Naismith S, Ward PB, Turner K, Parker G et al.
Psychol Med 2001; 31: 1403–1412.
Letters to the Editor
1064
Molecular Psychiatry
... Dempster, Kiss et al. [58] measured the comparative incidence of MTHFR 667T in 134 MDD children and 583 non-MDD children but found no significant relationship between the incidence of this genotype across the two samples of children. Slopien, Jasniewiscz et al. [59] compared the depression status of 172 postmenopausal women with or without MTHFR 677T and found that those women with that polymorphism also had a 5.7-fold increased risk of having depression according to the Hamilton Depression Scale. ...
Article
Objective: To review recent data on six previously-identified genetic associations with depression, focusing upon issues of samples and instruments, in order to clarify the roles of these genetic variables in depression. Methods: Search the literature from the last four years, tabulate studies and examine the presence of any recent trends. Results: At least one previously-identified genetic association with depression is subject to the confounding effects of agerelated dementia, and some others do not have recent supportive data that connect them to depression. In addition, over 300 other genetic factors have recently been identified to have associations with depression. Recent findings regarding one particular polymorphism (the ss 5-HTTLPR) suggest that the “causal” connection between some genes and depression may be via sensitivity to environmental stressors rather than as a result of the genetic predisposition per se. Conclusion: Recent genetic association studies of depression appear to suggest that some of the six previously-identified polymorphisms are not consistently related to depression, and that at least one major “causal” genetic variable may act via increased environmental sensitivity.
Article
Der Folsäureantagonist Methotrexat (MTX) und damit der Folsäurestoffwechsel spielt in der Therapie pädiatrischer akuter lymphatischer Leukämien eine zentrale Rolle. Die Mutation C677T der Methylentetrahydrofolat-Reduktase (MTHFR) führt zu einem veränderten Folsäuremetabolismus. Die Kombination aus MTX und MTHFR-Mutation könnte zu einer veränderten Wirkung der Therapie führen. Wir untersuchten 31 Kinder, die zwischen 1990 und 1999 an einer ALL bzw. einem lymphoblastischem-NHL erkrankten und in der Universitätskinderklinik Aachen nach dem ALL-BFM 90 bzw. 95 Protokoll behandelt wurden, bezüglich MTHFR-C677T-Status und MTX-Toxizität anhand von Mukositis, Leukozyten-, Bilirubin- und Transaminasenwerten während der Therapie sowie 23 davon mit MRT- und MRSpektroskopie (MRS) im Abstand mehrerer Jahre nach Therapieende. 14 der Patienten waren homozygot Wildtyp, 16 heterozygot nur eine homozygot für die MTHFR-C677T-Mutation. Es konnte kein statistisch signifikanter Zusammenhang zwischen dem MTHFR-Status und der akuten oder chronischen MTX-Toxizität anhand der MRT oder MRS gefunden werden. Bereits zuvor war auf einen Zusammenhang zwischen MTX-Toxizität und MTHFR-Status hingewiesen worden, doch fand sich ein Zusammenhang meist nur, wenn keine Folsäure substituiert worden war, nicht aber bei Regimen, die, wie wir, nach der Hochdosis-MTX Therapie hochdosiert Folinsäure substituierten. Der Zusammenhang zwischen MTHFR-C677T-Status und cerebraler MTX-Toxizität anhand von MRT und MRSpektroskopie war bisher noch nicht untersucht worden. Nach den bisher vorliegenden Daten erscheint eine Anpassung der MTX-Therapie anhand des MTHFR-C677T-Status zur Vermeidung erhöhter Toxizität nicht sinnvoll. The antifolate Methotrexate and folate metabolism is central in therapy of pediatric Acute Lymphatic Leukemia (ALL). Methylenetetrahydrofolate reductase (MTHFR) is an important enzyme of folate metabolism, so that combination of MTX-therapy and mutation of the MTHFR gene (MTHFR C677T) might result in altered toxicity. We examined 31 children with ALL or NHL, that were treated according to GPOH ALL-BFM 95 or 98 protokoll at the pediatric department of Aachen University Hospital, regarding mucositis, leucocytes, bilirubin and transaminases. 23 of them were also examined by MRT or MRS. The relation between chronic cerebral MTX toxicity as seen on MRT and MRS and MTHFR mutation has not been examined systematically so far. 14 of our patients were wildtype, 16 heterozygous and only 1 homozygous mutated TT for MTHFR. There was no statistically significant association between MTHFR mutation and acute or chronic MTX toxicity. However such association was stated before, but only when no additional folate was given, and not if folate rescue after high-dose MTX was administered, like we did. This means a possible effect of the MTHFR mutation might be concealed by high folate doses. So, as far we know today, changing the MTX regimen is not necessary to prevent more severe MTX toxicity.
Article
Full-text available
The authors summarize their experiences in research organization accumulated during 13 years. At first they outline preliminary studies which are prerequisites of high prestige international grants. Then they describe the huge administrative apparatus dedicated - besides skilled professionals - for the construction and organization of the research, the management, continuous checking and evaluation of data in such a multisite study. Finally, they report on the scientific results obtained after 13 years of hard work.
Article
Full-text available
Hyperhomocysteinaemia has been identified as a risk factor for cerebrovascular, peripheral vascular and coronary heart disease. Elevated levels of plasma homocysteine can result from genetic or nutrient-related disturbances in the trans-sulphuration or re-methylation pathways for homocysteine metabolism. 5, 10-Methylenetetrahydrofolate reductase (MTHFR) catalyzes the reduction of 5, 10-methylenetetrahydrofolate to 5-methyltetrahydrofolate, the predominant circulatory form of folate and carbon donor for the re-methylation of homocysteine to methionine. Reduced MTHFR activity with a thermolabile enzyme has been reported in patients with coronary and peripheral artery disease. We have identified a common mutation in MTHFR which alters a highly-conserved amino acid; the substitution occurs at a frequency of approximately 38% of unselected chromosomes. The mutation in the heterozygous or homozygous state correlates with reduced enzyme activity and increased thermolability in lymphocyte extracts; in vitro expression of a mutagenized cDNA containing the mutation confirms its effect on thermolability of MTHFR. Finally, individuals homozygous for the mutation have significantly elevated plasma homocysteine levels. This mutation in MTHFR may represent an important genetic risk factor in vascular disease.
Article
Full-text available
Genome-wide linkage analysis was carried out in a sample of 497 sib pairs concordant for recurrent major depressive disorder (MDD). There was suggestive evidence for linkage on chromosome 1p36 where the LOD score for female-female pairs exceeded 3 (but reduced to 2.73 when corrected for multiple testing). The region includes a gene, MTHFR, that in previous studies has been associated with depressive symptoms. Two other regions, on chromosomes 12q23.3-q24.11 and 13q31.1-q31.3, showed evidence for linkage with a nominal P < 0.01. The 12q peak overlaps with a region previously implicated by linkage studies of unipolar and bipolar disorders and contains a gene, DAO, that has been associated with both bipolar disorder and schizophrenia. The 13q peak lies within a region previously linked strongly to panic disorder. A fourth modest peak with an LOD of greater than 1 on chromosome 15q lies within a region that showed genome-wide significant evidence of a recurrent depression locus in a previous sib-pair study. Both the 12q and the 15q findings remained significant at genome-wide level when the data from the present study and the previous reports were combined.
Article
Full-text available
Homocysteine concentrations are influenced by vitamin status and genetics, especially several polymorphisms in folate-metabolizing genes. We examined the interactions and associations with serum total homocysteine (tHcy) and folate concentrations of polymorphisms in the following folate-metabolizing genes: methylenetetrahydrofolate reductase (MTHFR), reduced folate carrier 1 (RFC1), and glutamate carboxypeptidase II (GCPII). Healthy volunteers (436 men and 606 women; mean age: 77.9 y) were randomly selected from among residents of Oxford, United Kingdom. We determined the individual effects and interactions of the MTHFR 677C-->T, MTHFR 1298A-->C, RFC1 80G-->A, and GCPII 1561C-->T polymorphisms on serum tHcy and folate concentrations. Subjects with the MTHFR 677TT genotype had higher serum tHcy concentrations than did those with the MTHFR 677CC genotype (P < 0.001), and this effect was greater in subjects with low serum folate status (P for interaction = 0.026). The MTHFR 1298A-->C, RFC1 80G-->A, and GCPII 1561C-->T polymorphisms had no individual effects on serum tHcy or folate concentrations. There was no interactive effect of the MTHFR 677C-->T and MTHFR 1298A-->C polymorphisms on tHcy concentrations. An interaction (P = 0.05) was observed between the MTHFR 677TT and RFC1 80GG genotypes, whereby persons with this genotype combination had a mean (+/-SEM) serum tHcy concentration (18.5 +/- 1.2 micromol/L) that was 5.1 micromol/L greater than the mean value of 13.4 +/- 0.2 micromol/L for the whole population. Folate and tHcy concentrations were not affected individually by the MTHFR 1298A-->C, RFC1 80G-->A, or GCPII 1561C-->T polymorphisms or by combinations of the MTHFR 677C-->T and MTHFR 1298A-->C genotypes. An interaction between the MTHFR 677TT and RFC1 80GG genotypes was observed whereby persons with this combination had higher serum tHcy.
Article
Full-text available
In the majority of patients with a chromosome 15 imprinting defect (ID) causing Prader-Willi syndrome (PWS) or Angelman syndrome (AS), the defect is a primary epimutation that occurred spontaneously in the absence of a DNA mutation. We have investigated whether common DNA sequence variants in the bipartite imprinting centre (IC) are associated with an increased susceptibility to imprinting defects. We have determined the haplotype structure of the IC and found that the two IC elements called 'PWS-SRO' and 'AS-SRO' lie on separate haplotype blocks. To identify susceptible IC sequence variants, we have used the transmission disequilibrium test. While we did not observe preferential transmission of a paternal allele or haplotype in 41 PWS-ID trios, we found a trend for preferential maternal transmission of one AS-SRO haplotype (H-AS3) in 48 AS-ID trios (P=0.058) and could identify two sequence variants in H-AS3 that are responsible for this effect. We also obtained tentative evidence that homozygosity for the 677C>T variant of the 5,10-methylenetetrahydrofolate reductase (MTHFR) gene on chromosome 1 might increase the risk of a maternal imprinting defect: the frequency of the TT genotype was significantly higher in the mothers of the AS patients with an imprinting defect than in the patients' fathers or the general population (P=0.028). Our findings suggest that women with the IC haplotype H-AS3 or homozygosity for the MTHFR 677C>T variant may have an increased risk of conceiving a child with an imprinting defect, although the absolute risk is low.
Article
In this report, we describe the results of the first genome-wide linkage survey for genetic loci that influence the development of unipolar Mood Disorders in 81 families identified by individuals with Recurrent, Early-Onset, Major Depressive Disorder (RE-MDD). Model-free linkage analysis was performed using genotypes for 392 highly informative polymorphisms with an average spacing of 9 cM. The highest maximum LOD score observed, 8.19 (genome-wide adjusted P ≪ 0.0001), occurred for Recurrent Major Depressive Disorder (R-MDD) at D2S2321 (205 cM), located 121 kb proximal to CREB1. Nineteen chromosomal regions contained linkage peaks that reached genome-wide statistical significance (genome-wide adjusted P < 0.05) and ten of these were “highly significant” (adjusted P < 0.001). Six of the 19 linkage peaks were revealed only when the analysis included covariates to control for the effects of sex and linkage to CREB1. Sex-specific susceptibility loci were common and preferentially affected the vulnerability of women to developing unipolar Mood Disorders. Five loci revealed evidence of interaction with the CREB1 locus in determining susceptibility (epistasis). A systematic candidate gene analysis is presented and potential overlaps of the linkage regions for unipolar Mood Disorders with those reported for other psychiatric disorders are discussed. The findings suggest that genes whose products participate in cellular signaling pathways that converge on CREB, as well as the target genes whose expression they regulate, may also harbor alleles that affect the development of Mood Disorders and related conditions. © 2003 Wiley-Liss, Inc.
Article
Neuropsychiatric research needs to examine the relationships between aetiological, genotypic and clinical risk factors and behavioural phenotypes. These relationships can now be examined in older patients with depressive disorders. Key behavioural features, clinical and vascular risk factors and putative genotypes for late-onset neurodegenerative disorders and/or vascular disease were recorded in 78 older patients with depression (mean age = 549 years, S.D. = 14.1) and 22 healthy control subjects (mean age = 55.5 years, S.D. = 9.6). Two or more vascular risks were more common in older patients (65% v. 26% of control subjects, P < 0.01), and in patients with late-onset disorders (82% v. 57% in patients with early-onset disorders, P < 0.05). Patients with late-onset depression had a higher prevalence of the homozygous or heterozygous forms of the C677T mutation of the methylenetetrahydrofolate reductase enzyme (MTHFR)(74% v. 48% in patients with early-onset disorders, P < 0.05). In a multivariate model, only presence of the MTHFR gene mutation predicted late-onset depression (odds ratio = 3.8, 95% CI = 1.1-12.9). Neither apolipoprotein E epsilon 4 or epsilon 2 was associated with depression, late-onset depression, cognitive impairment, or psychomotor change. Patients with apolipoprotein E epsilon 4 were less likely to have psychotic forms of depression. Patients with late-onset depression had an increased rate of the C677T MTHFR gene mutation and other vascular risk factors. This suggests that a proportion of these patients may have genetically-determined and/or other vascular aetiologies. Patients at risk of these disorders may be assisted by currently-available preventative strategies.
Article
DNA methylation, an essential epigenetic feature of DNA that modulates gene expression and genomic integrity, is catalyzed by methyltransferases that use the universal methyl donor S-adenosyl-l-methionine. Methylenetetrahydrofolate reductase (MTHFR) catalyzes the synthesis of 5-methyltetrahydrofolate (5-methylTHF), the methyl donor for synthesis of methionine from homocysteine and precursor of S-adenosyl-l-methionine. In the present study we sought to determine the effect of folate status on genomic DNA methylation with an emphasis on the interaction with the common C677T mutation in the MTHFR gene. A liquid chromatography/MS method for the analysis of nucleotide bases was used to assess genomic DNA methylation in peripheral blood mononuclear cell DNA from 105 subjects homozygous for this mutation (T/T) and 187 homozygous for the wild-type (C/C) MTHFR genotype. The results show that genomic DNA methylation directly correlates with folate status and inversely with plasma homocysteine (tHcy) levels (P < 0.01). T/T genotypes had a diminished level of DNA methylation compared with those with the C/C wild-type (32.23 vs.62.24 ng 5-methylcytosine/microg DNA, P < 0.0001). When analyzed according to folate status, however, only the T/T subjects with low levels of folate accounted for the diminished DNA methylation (P < 0.0001). Moreover, in T/T subjects DNA methylation status correlated with the methylated proportion of red blood cell folate and was inversely related to the formylated proportion of red blood cell folates (P < 0.03) that is known to be solely represented in those individuals. These results indicate that the MTHFR C677T polymorphism influences DNA methylation status through an interaction with folate status.
Article
Association tests of multilocus haplotypes are of interest both in linkage disequilibrium mapping and in candidate gene studies. For case-parent trios, I discuss the extension of existing multilocus methods to include ambiguous haplotypes in tests of models which distinguish between the cis and trans phase. A likelihood-ratio test is proposed, using the expectation-maximization (E-M) algorithm to account for haplotype ambiguities. Assumptions about the population structure are required, but realistic situations, including population stratification, which violate the assumptions lead to conservative tests. I describe a permutation procedure for the null hypothesis of interest, which controls for violation of the assumptions. For general pedigrees, I describe extensions of the pedigree disequilibrium test to include uncertain haplotypes. The summary statistics are replaced by their expected values over prior distributions of haplotype frequencies. If prior distributions are not available, a valid test is possible by using the E-M algorithm to estimate the null distribution of haplotype frequencies. Similar methods are available for quantitative traits. Exact permutation tests are difficult to construct in small samples, but an approximate procedure is appropriate in large samples, and can be used to account for dependencies between tests of multiple haplotypes and loci.
Article
The associations of folic acid and its derivatives with depressive disorder are reviewed. Derivatives of folic acid such as biopterins and the synthesis of S-adenosyl methionine (SAM) are known either to be associated with improvement or to have a direct therapeutic effect in depressive disorder. Studies investigating plasma and red cell folic acid levels in depressed patients have used differing assay methodologies which make comparison difficult, although there is substantial evidence of the association between depressive disorder (particularly severe depression) and low folic acid levels. The few studies available suggest folic acid has either antidepressant properties or can act as an augmenting agent for standard antidepressant treatment. A recently discovered genetic variant (5,10 MTHFR) leading to altered folic acid metabolism may explain why some individuals are vulnerable to the effects of folic acid deficiency, despite adequate intake. The links of 5,10 MTHFR to the presence of depressive disorder in the community are being investigated.
Article
Low dietary folate intake has been implicated as a risk factor for depression. However, observational epidemiological studies are plagued by problems of confounding, reverse causality and measurement error. A common polymorphism (C677T) in MTHFR is associated with methyltetrahydrofolate reductase (MTHFR) activity and circulating folate and homocysteine levels and offers insights into whether the association between low folate and depression is causal. We genotyped this polymorphism in 3,478 women in the British Women's Heart and Health Study. In these women, we looked at the association between genotype and three indicators of depression; ever diagnosed as depressed, currently taking antidepressants and the EuroQol mood question. We also carried out a systematic review and meta-analysis of all published studies which have looked at the association between MTHFR C677T genotype and depression. In the British Women's Heart and Health Study, we found evidence of an increased risk of ever being diagnosed as depressed in MTHFR C677T TT individuals compared with CC individuals, odds ratio (OR) 1.35(95% CI: 1.01, 1.80). Furthermore, we identified eight other studies, which have examined the association between depression and MTHFR C677T. We were able to include all of these studies in our meta-analysis together with our results, obtaining an overall summary OR of 1.36 (95% CI: 1.11, 1.67, P=0.003). Since this genotype influences the functioning of the folate metabolic pathway, these findings suggest that folate or its derivatives may be causally related to risk of depression.