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Neural network analysis by using the Self-Organizing Maps (SOMs) applied to human fossil dental morphology: A new methodology

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Abstract

Recent studies focusing on dental morphology of extinct and extant human populations have shown, on a global scale, the considerable potential of dental traits as a tool to understand the phenetic relations existing between populations. The aim of this paper is to analyze the dental morphologic relationships between archaic Homo and anatomically modern Homo sapiens by means of a new methodology derived from artificial neural networks called Self Organizing Maps (SOMs). The graph obtained by SOMs to some extent recalls a classical Multidimensional Scaling (MDS) or a Principal Component Analysis (PCA) plot. The most important advantages of SOMs is that they can handle vectors with missing components without interpolating missing data. The analyzed database consisted of 1055 Lower-Middle and (Early) Late Pleistocene specimens, which were scored by using dental morphological traits of the Arizona State University Dental Anthropology System (ASUDAS). The principal result indicates a close relationship between the Homo erectus s.l. and Middle Pleistocene specimens and the later Neandertal groups. Furthermore, the dental models of anatomically modern Homo sapiens are particularly different compared to the more archaic populations. Thus, SOMs can be considered a valuable tool in the field of dental morphological studies since they enable the analysis of samples at an individual level without any need i) to interpolate missing data or ii) place individuals in predetermined groups. Keywordsneural network analysis-Self-Organizing Maps (SOMs)-multidimensional scaling-dental morphology-Arizona State University Dental Anthropology System (ASUDAS)-Lower Pleistocene specimen-Middle Pleistocene specimen-Late Pleistocene specimen

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... 1). У представителей вида Homo erectus на центральных резцах он отмечался с частотой 77,8% [Manni, Vargiu, Coppa, 2007, Примечание: 1 -8 -состав серий не указан [Manni, Vargiu, Coppa, 2007, table 2]; 9 -Самарканд-1, Мальта-2, Лиственка, Костенки XVIII, Сунгирь-2, Сунгирь-3, Страшная-1, Соловьиная Лука [Зубов, Гохман, 2003;Шпакова, 2000, 2001Халдеева, 2006;Viola, Markin, Zenin, Shunkov, Derevianko, 2011;данные Лингвальная ямка верхних резцов наблюдается при слиянии в базальной части коронки лингвальных краевых гребней, или при объединении их с лингвальным бугорком в непрерывный «пояс», в верхней части отделенный от лингвальной поверхности зуба. Сведений о распространенности этого фена у древних представителей рода Homo мало. ...
... У Homo heidelbergensis -50% (один случай из двух) на центральных резцах, 33,3% (один случай из трех) -на клыках [Martinon-Torres et al., 2012, table 7]. В пределах вида Homo neanderthalensis по данным разных авторов частота пальцевидных выступов колеблется от 75% до 95% на центральных резцах, от 75% до 100% на латеральных резцах, и у всех находок, относящихся к этому виду они были встречены на клыках [Manni, Vargiu, Coppa, 2007, [Manni, Vargiu, Coppa, 2007, table 2]. На находках с территории бывшего СССР пальцевидные выступы медиальных резцов фиксируются в 50% случаев, на латеральных фен отсутствует, на клыках встречен со стопроцентной частотой (табл. ...
... Наиболее высокие частоты среднего гребня тригонида наблюдаются у представителей вида Homo neanderthalensis. В разных выборках его частоты варьируют от 80% до 100% [Manni, Vargiu, Coppa, 2007, Наклон бугорков к центру коронки на верхних и нижних молярах. Признак фиксировался на нестертых зубах, при явном наклоне вертикальной оси главных бугорков к центру коронки. ...
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Distribution of frequency of archaic dental markers in Mesolithic and Neolithic population of Eurasia is discussed. Longer preservation of archaic complex in Northern Eurasian and Southern Eurasian protomorphic anthropological formation, compared with the European series is stated. It is also discussed that archaic signs are better for studying of protomorphic formations diff erentiation, compared with the standard research program.
... At that time, our research was directed to the classification of a recently discovered dental sample (Tabun cave, Israel) that was compared to a reference database composed of a large number of different samples in order to confirm its belonging to the neanderthal teeth morphotype (coppa et al. 2007a). The reference database itself was published the same year (Manni et al. 2007). ...
... To conclude this short list, Anns have been combined with Geographic Information Systems (GIS) to predict the location of possibly productive fossil-bearing localities (Anemone et al. 2011). our two studies (coppa et al. 2007a;Manni et al. 2007) confirm their usefulness in a variety of issues addressed by physical anthropologists, palaeontologists and forensic scientists (classification, prediction) and we advocate their further spread and dissemination in our discipline. This article may be a way to attract the attention of colleagues on Anns and, in order to provide some insight, we will methodologically review our studies by stressing their advantages over other existing methods. ...
... In the studies we have mentioned (coppa et al. 2007a;Manni et al. 2007), we analysed dentitions of single individuals with the aim to display each of them as a single data point in a kind of multivariate representation. As a consequence, all the traits scored on each tooth of the maxilla and mandible of single individuals were coded as vectors having the components defined by a zero (0), or by a one (1), according to the presence or absence (established on the basis of selected breakpoints) of given morphological tooth traits listed in the repertorium of the ASUDAS system (Turner et al. 1991;Scott, Turner 1997) (see Fig. 1 for an example). ...
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The paper illustrates how the application of a specific version of Artificial neural net- works, Self-organizing Maps (SoMs), enabled a more accurate analysis of human dental mor- phology. SoMs enable the processing of individual samples (dentitions) because they can cope with missing data. In fact, in archaeological samples of human remains, teeth are often broken or missing making a complete set of morphological traits often impossible to achieve. other classification methods like principal component Analysis, Multidimensional Scaling, Mean Measure of Divergence, Multiple correspondence Analysis do not handle missing descriptors and incomplete data matrices have to be “filled in”, thus leading to a certain approximation in the outcome with a lack of geographical or temporal resolution, as many incomplete samples have to be merged into a virtual one that does not present missing descriptors. our discussion about the proficiency of SoMs, and Anns in general, in the exploration and classification of anthropological databases concerning morphology is based on a specific case study, that is the classification of a neanderthal sample. Through this example we would like to attract the attention of anthropologists and archaeologists to a very flexible methodology that is seldom applied, despite being widely used in many other disciplines.
... In addition, MA 93 exhibits a welldeveloped and complete mid-trigonid crest, which even if found in Georgian H. erectus and frequent in H. erectus s.s., is generally absent or interrupted by the central groove in African H. erectus/ ergaster specimens like KNM-ER 820, 992 and KNM-WT 15000 (Wood, 1991;Brown and Walker, 1993;Martinón-Torres et al., 2007Bailey and Hublin, 2013;Zanolli, 2013). Unlike most Afro-European H. erectus lower molars, like D211 (Martinón-Torres et al., 2008), KGA10-1 (Suwa et al., 2007), KNM-ER 820 and KNM-WT 15000 (Wood, 1991;Brown and Walker, 1993), the Eritrean molar lacks any expression of a deflecting wrinkle, while the presence of a C7, better expressed at the EDJ than at the outer enamel surface, is compatible with the high frequency of this trait observed in H. erectus (Manni et al., 2007;Bailey and Hublin, 2013). Interestingly, in addition to its specific features, MA 93 closely resembles the LM1 KGA10-1 from Konso (Suwa et al., 2007), the two sharing a rectangular occlusal outline, the presence of a C7, the lack of protostylid (which is, conversely, quite a common feature in H. erectus s.l.; Manni et al., 2007), and low and nearly parallel lateral crown walls. ...
... Unlike most Afro-European H. erectus lower molars, like D211 (Martinón-Torres et al., 2008), KGA10-1 (Suwa et al., 2007), KNM-ER 820 and KNM-WT 15000 (Wood, 1991;Brown and Walker, 1993), the Eritrean molar lacks any expression of a deflecting wrinkle, while the presence of a C7, better expressed at the EDJ than at the outer enamel surface, is compatible with the high frequency of this trait observed in H. erectus (Manni et al., 2007;Bailey and Hublin, 2013). Interestingly, in addition to its specific features, MA 93 closely resembles the LM1 KGA10-1 from Konso (Suwa et al., 2007), the two sharing a rectangular occlusal outline, the presence of a C7, the lack of protostylid (which is, conversely, quite a common feature in H. erectus s.l.; Manni et al., 2007), and low and nearly parallel lateral crown walls. To a lesser extent, the same is true for the lower M2 of the same specimen, even if the latter shows a slight buccolingual tapering of the talonid resulting into a more rounded occlusal outline (Suwa et al., 2007). ...
... Compared with the condition more typical of African and Eurasian Early and Middle Pleistocene anterior teeth (e.g., Wood, 1991;Manni et al., 2007;Martinón-Torres et al., 2007, 2012Bailey and Hublin, 2013;Bermúdez de Castro and Martinón-Torres, 2013), while occlusally worn, the incisors from Uadi Aalad apparently lack any developed expression of accessory features (i.e., distinct tubercles, ridges, or cusp-like features expressed in the cingular region of the lingual surface). For its buccolingual crown diameter, the lower central incisor UA 369 falls within the range of variation of most Early and Middle Pleistocene samples, while the upper lateral incisor is relatively small compared with early African Homo, but still comparable with the Javanese H. erectus estimates (Zanolli, 2013). ...
... In the Upper Paleolithic samples from West and East Europe it also occurs infrequently (6.1-7.8%) (Manni et al., 2007) and it is absent in findings from the European part of Russia (Zubov, 2000;Zubova and Chikisheva, 2015b). ...
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Analysis of phenetic distances between living and ancient populations through the study of non-metric dental traits. Human Evolution Meeting, Cold Spring Harbor
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The Pavlov/Doln’i Vě estonice human remains in the context of the European Pleistocene populations. IVth International Anthropological Congress of Ales Hrdlič cka “World Anthropology at the Turn of the Century
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Les populations préhistoriques du Maroc: Relations phénétiques avec les populations de la fin du Pléistocéne-dèbut de l’Holocène en Eurasie et en Afrique du Nord. 1829èmeSéance Réunion annuelle de la Société d’Anthropologie de Paris
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Data exploration using Self-Organizing-Maps. Acta Polytechnica Scandinavica (Mathematics, computing and management in engineering series
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The Krapina remains: the morphological dental evidence. International Conference “The Krapina Neandertals and Human Evolution in Central Europe
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Phenetic relationships of human populations by means of morphological dental traits
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The Pleistocene-Holocene transition in Italy. The evidence of morphological dental traits. Science and Technology for the Safeguard of Cultural Heritage in the Mediterranean Basin
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Analysis of phenetic distances between living and ancient populations through the study of non-metric dental traits
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Multivariate Analysis
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