The experiment was conducted at Akshayvat Farm, Village Arai, Block Karchana, Allahabad, during 2017-2018. In the agrisilviculture system, canopy management through pruning is a critical silvicultural practice for minimizing above-and below-ground competition with associated crops. The study comprised five pruning intensities: no pruning, 20%, 40%, 60%, 80% pruning, and one open condition (crop only, no trees) in the main plot. Additionally, three levels of fertilizer doses and seed rates were tested in the subplot: F1 (recommended dose), F2 (25% higher nitrogen than recommended), and F3 (25% higher seed rate than recommended). Each treatment was replicated three times to evaluate productivity and carbon sequestration potential. The results indicated that wheat grown in open conditions recorded significantly higher values for plant height (65.37 cm), number of tillers (94.53), fresh weight (956.42 g), dry weight (376.12 g), grain yield (25.48 q/ha), straw yield (41.26 q/ha), harvest index (38.16%), grain-to-straw ratio (0.617), fixed carbon (21.76%), and carbon sequestration (4.10 t/ha) compared to the no-pruning treatment. Among fertilizer levels, F2 (higher nitrogen) resulted in the highest germination percentage (92.40%), plant height (65.22 cm), number of tillers (92.40), dry weight (360.49 g), grain yield (23.91 q/ha), harvest index (37.52%), grain-to-straw ratio (0.601), ash content (17.29%), and carbon sequestration (3.73 t/ha), outperforming the F1 treatment. At 12 years of age, Dalbergia sissoo under 20% pruning exhibited superior growth with greater tree height (12.97 m), basal area (0.097 m²), above-ground biomass (400.35 kg/tree), carbon sequestration (208.95 kg/tree, 83.58 t/ha), and CO₂ sequestration (766.86 kg/tree, 69.71 kg/tree/year) compared to other pruning levels. Agronomical management using F2 (25% more nitrogen) also recorded significantly higher tree height (12.27 m) and stand biomass (326.22 kg/tree) than other treatments. Agroforestry systems have gained significant attention for their potential to mitigate climate change through carbon sequestration while supporting agricultural productivity. This study focuses on the integration of Dalbergia sissoo (Indian Rosewood) with wheat (Triticum aestivum) in agroforestry systems to assess its role in enhancing carbon sequestration. By analyzing biomass accumulation, soil organic carbon, and productivity metrics, we provide a comprehensive evaluation of this agroforestry model. The findings highlight the dual benefits of carbon storage and sustainable crop production, emphasizing the ecological and economic advantages of such integrated systems.