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Introduction
Publications
Publications (10)
Bacterial social interactions play crucial roles in various ecological, medical, and biotechnological contexts. However, predicting these interactions from genome sequences is notoriously difficult. Here, we developed bioinformatic tools to predict whether secreted iron-scavenging siderophores stimulate or inhibit the growth of community members. S...
The soil-borne bacterial pathogen Ralstonia solanacearum causes significant losses in Solanaceae crop production worldwide, including tomato, potato, and eggplant. To efficiently prevent outbreaks, it is essential to understand the complex interactions between pathogens and the microbiome. One promising mechanism for enhancing microbiome functional...
In this work, we introduced a siderophore information database (SIDERTE), a digitized siderophore information database containing 649 unique structures. Leveraging this digitalized data set, we gained a systematic overview of siderophores by their clustering patterns in the chemical space. Building upon this, we developed a functional group‐based m...
Unlocking the secrets of microbial interactions through genomics is pivotal for advancing microbial ecology. In most ecosystems, the scarcity of iron makes iron-mediated interactions a central theme in shaping microbial communities. Bacteria have evolved diverse strategies, including the production of siderophores, diverse secondary metabolites, to...
Siderophores, a highly diverse family of secondary metabolites, play a crucial role in facilitating the acquisition of the essential iron. However, the current discovery of siderophore relies largely on manual approaches. In this work, we introduced SIDERTE, a digitized siderophore information database containing 822 siderophore records with 649 un...
Streptomyces JD211 induces rice resistance and reduces the disease index of rice blast. However, the key pathways or components involved in the defense mechanism by which antagonistic microorganisms cause resistance have not been elucidated. To better understand the cellular process involved in JD211-induced resistance, the changes of proteomics in...
Siderophores, a key substance that microorganisms produce to obtain iron under iron-limited conditions, play an important role in regulating interactions between beneficial bacteria and pathogenic bacteria. A large number of bacteria were isolated from the rhizosphere, and we used the method presented here to assay the siderophore production by the...
Plant pathogenic bacteria cause high crop and economic losses to human societies1-3. Infections by such pathogens are challenging to control as they often arise through complex interactions between plants, pathogens and the plant microbiome4,5. This natural ecosystem is rarely studied experimentally at the microbiome-wide scale, and consequently we...
Interactions between plant pathogens and root-associated microbes play an important role in determining disease outcomes. While several studies have suggested that steering these interactions may improve plant health, such approaches have remained challenging in practice. Because of low iron availability in most soils, competition for iron via secr...
The induced resistance against plant pathogens via biocontrol agents is considered as an eco‐friendly and promising strategy. In this study, the induced resistance against Magnaporthe oryzae (M. oryzae) in rice seedling by a new potential biocontrol agent Streptomyces JD211 (JD211) was evaluated. The effects of JD211 on defense‐related enzymes acti...