Yongchao Liang

• PhD
• Research Director at Zhejiang University

Research on silicon (Si) biogeochemistry and its beneficial effects for plants has received significant attention over several decades, but the reasons for the emergence of high-Si plants remain unclear. Here, we combine experimentation, field studies and analysis of existing databases to test the role of temperature on the expression and emergence...

Understanding root uptake mechanisms for various elements is crucial for optimizing heavy metal remediation strategies and enhancing plant-nutrient interactions. However, simple and effective methods to differentiate the contributions of specific root segments in element uptake are lacking. Here, we developed a layered culture device consisting of...

Background Forest soils are usually highly weathered and abundant in mineral-weathering bacteria, which have not been used to mobilize soil minerals for crop production. Here, we used an acidic forest soil with low available phosphorus (P), potassium (K), and silicon (Si) to isolate bacteria capable of co-solubilizing P, K, and Si (PKSi-solubilizin...

While research on terrestrial silicon (Si) biogeochemistry and its beneficial effects for plants has received significant attention in last decades, the reasons for the emergence of high-Si taxa remain unclear. Although the “arms race” hypothesis (i.e. increased silicification through co-evolution with mammalian grazers) has received some support,...

Silicon (Si) is a widely recognized beneficial element in plants. With the emergence of nanotechnology in agriculture, silicon nanoparticles (SiNPs) demonstrate promising applicability in sustainable agriculture. Particularly, the application of SiNPs has proven to be a high-efficiency and cost-effective strategy for protecting plant against variou...

The discovery of comammox Nitrospira has altered our perception of the nitrogen biogeochemical cycle. However, their functional importance compared to canonical ammonia oxidisers (i.e., ammonia-oxidising bacteria (AOB) and archaea (AOA)) in agricultural soils remains elusive, especially in acidic soils. Here, we assessed the functional importance o...

Silicon (Si) has been well-known to enhance plant resistance to heavy-metal stress. However, the mechanisms by which silicon mitigates heavy-metal stress in plants are not clear. In particular, information regarding the role of Si in mediating resistance to heavy-metal stress at a single cell level is still lacking. Here, we developed a hierarchica...

Background Plant can evolve with a core root microbiome that maintains essential functions for host performance. However, the relative importance of plant traits and soil factors on the structure, assembly, co-occurrence networks of the core root microbiomes and their relevance for plant characteristics remain elusive. Here, we investigated how pla...

Cadmium (Cd) pollution is an important threat to agricultural production globally. Silicon (Si) and silicon nanoparticles (Si NPs) can mitigate Cd stress in plants. However, the mechanisms underlying the impacts of Si and Si NPs on Cd resistance, particularly in low-Si accumulators, remain inadequately understood. Accordingly, we conducted a compar...

Heavy metal pollution threatens food security, and rhizosphere acidification will increase the bioavailability of heavy metals. As a beneficial element in plants, silicon can relieve heavy metal stress. However, less attention has been paid to its effects on plant rhizosphere processes. Here, we show that for Japonica (Nipponbare and Oochikara) and...

Soil contamination by heavy metals has become a severe threat to the global food security. To mitigate metal toxicity in plants, the use of Si has been widely studied. Despite its ability to reduce the accumulation of metal in leaves, the mechanism by which Si influences the entry of metals into roots remains incompletely understood. To address thi...

Silicon (Si) is a widely recognized beneficial element in plants. The application of Si fertilizers has become a rather common agronomic practice for sustainable agricultural production. However, due to the vast diversity of Si fertilizers, no official method is currently available for estimating the availability of Si in different Si fertilizers t...

Trivalent chromium [Cr(III)] is a threat to the environment and crop production. Silicon (Si) has been shown to be effective in mitigating Cr(III) toxicity in rice. However, the mechanisms by which Si reduces Cr(III) uptake in rice are unclear. Herein, we hypothesized that the ability of Si to obstruct Cr(III) diffusion via apoplastic bypass is rel...

Salicylic acid (SA) is a phenolic phytohormone that plays a vital role in plant development and mediates plant responses to plenty of adversity including arsenic (As) stress. The effects of exogenous addition of SA on As tolerance and As accumulation were assessed in two cultivars of rice (Oryza sativa L.) Nipponbare and Zhongzao 39, hydroponically...

Long-term intensive fertilization is a practice common around the world and gradually alters soil microbiome, however, its influences on the temporal resilience of soil multifunctionality to biodiversity loss and biodiversity-multifunctionality relationships remain poorly understood. Here, we manipulated soil biodiversity using the dilution-to-exti...

As a potent greenhouse gas, soil nitrous oxide (N2O) is strongly stimulated by rising temperature, triggering a positive feedback effect of global warming. However, its temperature sensitivity varies greatly among soils with different physical and chemical characteristics, while associated mechanisms remain unknown. Here we performed a meta-analysi...

The increasing input of nitrogen (N) fertilizers has a considerable impact on agricultural soil carbon (C) cycling due to its influence on soil microbial abundance and assemblages. However, the microbial mechanism underlying the response of straw-induced priming effect to long-term N application remains an open question. Here, using soils with thre...

Silicon (Si) is a widely recognized beneficial element in plants. The application of Si fertilizers has become a rather common agronomic practice for sustainable agricultural production. However, due to the vast diversity of Si fertilizers, no official method is currently available for estimating the availability of Si in different Si fertilizers t...

Persistent microbial symbioses can confer greater fitness to their host under unfavorable conditions, but manipulating such beneficial interactions necessitates a mechanistic understanding of the consistently important microbiomes for the plant. Here, we examined the phylogenetic profiles and plant-beneficial traits of the core microbiota that cons...

Disparities in the substrate affinity and tolerance threshold for ammonia have been believed to play a key role in driving niche differentiation between ammonia-oxidizing archaea (AOA) and bacteria (AOB); however, recent surveys argue that direct competition between AOA and AOB is also important in this phenomenon. Accordingly, it is reasonable to...

Phytolith is a form of SiO2 in plants. Carbon can be sequestrated as phytolith-occluded carbon (PhytOC) during the formation of phytoliths. PhytOC is characterized by its high resistance to temperature, oxidation and decomposition under protection of phytoliths and can be stored in the soil for thousands of years. Soil also is a huge PhytOC sink; h...

Nitric oxide (NO) and ethylene are both important signaling molecules which participate in numerous plant development processes and environmental stress resistance. Here, we investigate whether and how NO interacts with ethylene during the development of endodermal barriers that have major consequences for the apoplastic uptake of cadmium (Cd) in t...

Although silicon (Si) transporters-mediated uptake of arsenic (As) by rice roots is well-documented, how Si influences As behaviors in rhizosphere and rhizoplane before As entry into roots is still unclear. Here we used three rice genotypes to explore the effect of silicic acid on the root uptake of As as impacted by chemical and microbial changes...

Root cell wall (RCW) remodeling induced by copper oxide nanoparticles (CuO NPs) and its consequences for root growth of lettuce (Lactuca sativa L.) were investigated in this study. The results showed that a low concentration of CuO NPs (5 mg L⁻¹) stimulated reactive oxygen species (ROS) signaling, led to the degradation of pectin by H2O2, and promo...

Nitrogen addition to croplands greatly increases global emissions of the potent greenhouse gas nitrous oxide (N2O). Three ammonia-oxidizing functional guilds constitute the major producers of N2O in agricultural soil, but their relative contributions are still poorly understood, especially the newly discovered and widespread complete ammonia oxidiz...

Zizania latifolia is a wild rice that contains phytoliths (Phyt) that have considerable potential for carbon sequestration. We hypothesized that the capacity of phytolith carbon sequestration in residues might increase by 20%, and economic profit would be twice as high under a rice/single-season Z. latifolia rotation as under rice monoculture. To t...

In this study, hydrochars and biochars were prepared from rice husk (RH) and Zizania latifolia straw (ZL) at various pyrolysis temperatures as absorbents, for removing toxic ions from single and competitive solutions of cadmium (Cd) and/or lead (Pb). The adsorption efficiencies of Cd and Pb in both hydrochars and biochars were lower in the competit...

The efficacy of nitrification inhibitors (NIs) dicyandiamide (DCD) and 3,4-dimethylpyrazole phosphate (DMPP) varies with soil types. Understanding the microbial mechanisms for this variation may lead to better modelling of NI efficacy and therefore on-farm adoption. This study addressed the response patterns of mineral nitrogen, nitrous oxide (N2O)...

Interspecific competition between ammonia-oxidizing archaea (AOA) and bacteria (AOB) has been documented, however, its significance in niche differentiation between these nitrifiers under ammonia-rich conditions remains elusive. A network-oriented microcosm incubation study was established to improve our understanding of their interspecific competi...

Elevated carbon dioxide (CO2) (eCO2) has been shown to affect the nitrous oxide (N2O) emission from terrestrial ecosystems by altering the interaction of plants, soils, and microorganisms. However, the impact of eCO2 on the N2O emission from agricultural soils remains poorly understood. This meta-analysis summarizes the effect of eCO2 on N2O emissi...

Root border cells (RBCs) and their mucilage are considered to play an important role in protecting root tip from aluminum (Al) toxicity, but their interactions with silicon (Si) under Al stress still remain unclear. Here, we investigated the effect of Si on the formation of RBCs under Al stress and the related detoxification mechanism in hydroponic...

Silicon (Si) can alleviate aluminum (Al) toxicity in rice (Oryza sativa L.), but the mechanisms underlying this beneficial effect have not been elucidated, especially under long-term Al stress. Here, the effects of Al and Si on the suberization and development of rice roots were investigated. The results show that, as the Al exposure time increased...

Phosphorus (P) accumulation in croplands resulting from ever-increasing input of P fertilizer strongly influences soil microbial growth and activities, which is expected to alter the soil priming effect (PE) induced by plant residue. However, the effect of P availability on the magnitude and direction of PE remains largely unexplored and the underl...

Background: Persistent microbial symbioses offer the potential to confer greater fitness to the host under unfavorable conditions, but manipulation of such beneficial interactions requires a mechanistic understanding of the consistently important microbiome members for the plant. Here, use five phylogenetically divergent heavy metal (HM) accumulati...

A 28-day microcosm experiment was conducted using three paddy soils (an alluvial paddy soil, a loess-formed paddy soil, and a yellow clayey paddy soil) to investigate the impact of procyanidin on N2O emissions and associated microbial mechanisms. The efficacy of procyanidin on N2O emissions varied among the paddy soils tested, with an average inhib...

Microbial mechanism of in-situ remediation of arsenic (As) in As-contaminated paddy fields by silicon (Si) fertilization has been rarely reported, especially under continuous rice cultivation and Si applications. In this study, two Si fertilizers were applied for three phases in five consecutive rice seasons to investigate the long-lasting impacts...

Denitrification is a major process of the nitrogen (N) cycle by converting nitrate (NO- 3) back to gaseous nitrogen (N2), which leads to massive losses of N, including fertilizer N, from agricultural systems. One mitigation strategy for these N losses involves denitrification inhibition by plant-derived biological denitrification inhibitors (BDIs)....

A microcosm study was established using three arable soils differing in both physicochemical properties and AOB or AOA dominance of ammonia oxidization. Nitrification and N2O emissions were quantified under 10 Pa C2H2, 1-octyne, or 3,4-dimethylpyrazole phosphate (DMPP), and the community composition and abundance of AOA and AOB were assessed. Amend...

Phytoremediation is a cost-effective and environmentally-friendly method to treat cadmium (Cd) contaminated soils, however, there is still a lack of safe disposal methods of harvested hyperaccumulators. In this study, by integrating glycolysis and pyrolysis, we investigated the possibility of bioproduct production and Cd collection from the hyperac...

Background and aims Silicon (Si) is known to alleviate aluminum (Al) toxicity in a number of plant species; however, the mechanisms of Si-triggered Al detoxification have not been elucidated, especially in rice (Oryza sativa). We investigated the interactions between Si and Al in root and the role of cell wall polysaccharides in rice resistance to...

Cadmium (Cd) and lead (Pb) pollution in soil and their accumulation in edible parts possess a worldwide eco-environmental and health risk, especially in developing countries. Recently, organosilicone fertilizer (OSiF) has been reported to reduce uptake of heavy metals, but the effectiveness has not been verified and its associated mechanisms are no...

Cadmium (Cd) is harmful to the environment and threatens human health. With the increasing use of cerium oxide nanoparticles (CeO2NPs) in extensive industries, investigating the combination of CeO2NPs and plants has attracted research interests for phytoremediation. Here, we explored the effects of CeO2NPs on Cd uptake, transport and the consequent...

Returning crop straw into the soil is an important practice to balance biogenic and bioavailable silicon (Si) pool in paddy, which is crucial for the healthy growth of rice. However, owing to little knowledge about soil microbial communities responsible for straw degradation, how straw return affects Si bioavailability, its uptake, and rice yield r...

Phytolith-occluded carbon (PhytOC) is resistant to decomposition and, if crop residue biomass is incorporated into soil, has a significant potential for long-term soil carbon sequestration. However, the magnitude and spatial distribution of rice straw PhytOC sequestration remain unclear. Here, we used 279 samplings from nine provinces across China...

Root cell wall (RCW) modification is a widespread important defense strategy of plant to cope with trace metals. However, mechanisms underlying its remolding in cadmium (Cd) accumulation are still lacking in hyperaccumulators. In this study, changes of RCW structures and components between nonhyperaccumulating ecotype (NHE) and hyperaccumulating ec...

Silicon (Si) can alleviate salt stress by decreasing Na⁺ bypass flow in rice (Oryza sativa L.), however, the mechanisms underpinning remain veiled. In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and...

Sedum alfredii (Crassulaceae) is a promising model plant for Cd/Zn phytoextraction, with potential for leveraging its rhizosphere microbiomes to help improve phytoremediation efficiency and enhance their use. Here, we investigated the successional trajectories, assembly rules and co-occurrence networks of archaeal and bacterial rhizosphere microbio...

Accumulation of arsenite [As(III)] and dimethylarsinic acid (DMA) in rice grainsposes a threat to human health. Although silicon (Si) has been reported to reduce As uptake, the mechanisms involved are not fully understood. In this study, we first confirmed that the concurrent addition of Si and As in solution decreased As accumulation in rice. Then...

Ethylene is an important phytohormone for plant adaptation to heavy metal stress. However, the effects of ethylene on radial apoplastic transport of Cd remain elusive. This study investigated the role of ethylene on apoplastic barriers development and consequences for Cd uptake in Sedum alfredii. In response to Cd, endogenous ethylene production in...

The radial transport of cadmium (Cd) is essential for Cd influx in roots. The role of radial transport pathway on the Cd translocation from root to shoot among wheat genotypes are still poorly understood. This study explored the role of apoplastic and symplastic pathway on root Cd uptake and root-to-shoot translocation in Zhenmai 10 (ZM10, high Cd...

Salinity stress severely inhibits the growth of plant via ionic toxicity and osmotic constraint. Exogenous silicon (Si) can alleviate salinity stress, but the mechanisms behind remain unclear. To investigate the role of Si in alleviating ionic and osmotic components of salinity, rice (Oryza sativa L.) seedlings were grown hydroponically in iso-osmo...

Mineral nutrients play an important role in heavy metal uptake and accumulation in plant. However, the effects of calcium (Ca) supply level on apoplastic transport in roots and consequences for uptake of cadmium (Cd) in hyperaccumulators are poorly understood. Here, we investigated how Ca regulated the development of apoplastic barriers in the root...

Aims As a vital polysaccharide related to mechanisms of plant resistance to trace metal in the root cell wall, the role of hemicellulose in cadmium (Cd) accumulation in hyperaccumulators is still unknown. We investigated hemicellulose modification in response to Cd in two populations of Sedum alfredii. Methods Nonhyperaccumulating population (NHP)...

Biochar has been demonstrated to reduce nitrous oxide (N2O) emissions from soils, but its effect is highly soil-dependent. In particular, in soils with strong nitrification potential, biochar addition may increase N2O emissions. Thus, in soils with strong nitrification potential, the combination of biochar with the nitrification inhibitor 3,4-dimet...

The transmission mode of shoot-associated endophytes in hyperaccumulators and their roles in root microbiome assembly and heavy metal accumulation remains unclear. Using 16S rRNA gene profiling, we investigated the vertical transmission of shoot-associated endophytes in relation to growth and Cd/Zn accumulation of Sedum alfredii (Crassulaceae). End...

Phytoextraction is an attractive strategy for remediation of soils contaminated by heavy metal (HM), yet the effects of this practice on biochemical processes involved in soil nutrient cycling remain unknown. Here we investigated the impact of successive phytoextraction with a Cd/Zn co-hyperaccumulator Sedum alfredii (Crassulaceae) on potential nit...

Successive phytoextraction by S. alfredii significantly reduced the PNR in rhizo-sphere. • Successive phytoextraction decreased the abundance and activity of archaeal amoA gene. • Successive planting with S. alfredii obviously altered the structure of nitrifying community. • Root exudates of S. alfredii inhibited ammonia oxidation by decreasing amm...

The urease inhibitor, N-(n-butyl) thiophosphoric triamide (NBPT), has been proposed to reduce synthetic fertilizer-N losses, including nitrous oxide (N2O) emissions from agricultural soils. However, the response of N2O emission to NBPT amendment is inconsistent across soils and associated microbial mechanisms remain largely unknown. Here we perform...

Mixed or chloride salty ions dominate in saline soils, and exert wide-ranging adversely affect on soil biological processes and soil functions. The objectives of this study were to (1) explore the impacts of mixed (0, 3, 6, 10, 20 and 40 g Cl–/SO42– salt/kg dry soil) and chloride (0, 1.5, 3, 5, 8 and 15 g Cl– salt/kg dry soil) salts on soil enzyme...

Chromic oxide nanoparticles (Cr2O3 NPs) are widely used in commercial factories and can cause serious environmental problems. However, the mechanism behind Cr2O3 NP-induced phytotoxicity remains unknown. In this study, the effects of Cr2O3 NPs on the growth, chlorophyll fluorescence, SEM-EDS analysis, and chloroplast ultrastructure of soybean (Glyc...

Abiotic and biotic stresses are the major factors limiting plant growth worldwide. Plants exposed to abiotic and biotic stresses often cause reduction in plant biomass as well as crop yield, resulting in plant biomass carbon loss. As a beneficial and quasi-essential element, silicon accumulation in rhizosphere and plants can alleviate the unfavorab...

Urease inhibitors and nitrification inhibitors can reduce nitrogen (N) loss in agriculture soil. However, the effect of inhibitors on soil N2O emissions under the drip irrigation system remains unclear. A pot and a field experiment with two inhibitors were conducted to explore how inhibitors regulate soil nitrogen transformation and N2O emissions....

The mechanism by which temperature sensitivity (TS) of soil N2O emissions is increased by agricultural management with application of nitrogen fertilizer (AMN) is unclear. We hypothesized that a higher TS of N2O emission induced by AMN is the result of the faster growth of specific microorganisms in response to faster nitrogen (N) mineralization at...

Ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) co-exist in soils. However, little is known about the effects of fertilization on the AOA and AOB communities and their relative contribution to soil nitrification. The objective of this field study was to determine the effects of four years of mineral and organic fertilizer (i.e....

Interactions between roots and microbes affect plant’s resistance to abiotic stress. However, the structural and functional variation of root-associated microbiomes and their effects on metal accumulation in hyperaccumulators remain poorly understood. Here, we characterize the root-associated microbiota of a hyperaccumulating (HP) and a non-hyperac...

The effects of consecutive application of chemical fertilizer with or without organic fertilizer on soil N2O emissions and denitrifying community structure in a drip-irrigated field were determined. The four fertilizer treatments were (i) unfertilized, (ii) chemical fertilizer, (iii) 60% chemical fertilizer plus cattle manure, and (iv) 60% chemical...

This study evaluated the effect of silicate fertilizer on denitrification and associated gene abundance in a paddy soil. A consecutive trial from 2013 to 2015 was conducted including the following treatments: control (CK), mineral fertilizer (NPK), NPK plus sodium metasilicate (NPK + MSF), and NPK plus slag-based silicate fertilizer (NPK + SSF). Re...

The association between microbial communities and plant growth in long-term fertilization system has not been fully studied. In the present study, impacts of long-term fertilization have been determined on the size and activity of soil microbial communities and wheat performance in a red soil (Ultisol) collected from Qiyang Experimental Station, Ch...

Slag-based silicate fertilizer has been widely used to improve soil silicon- availability and crop productivity. A consecutive early rice-late rice rotation experiment was conducted to test the impacts of steel slag on soil pH, silicon availability, rice growth and metals-immobilization in paddy soil. Our results show that application of slag at a...

A. Effect of steel slag fertilizer application on total Cd concentration in soil. B. Effect of steel slag fertilizer application on total Pb concentration in soil. (XLS)

A. Effect of steel slag fertilizer application on Cd uptake by rice grain. B. Effect of steel slag fertilizer application on Pb uptake by rice grain. (XLS)

Effect of steel slag fertilizer application on plant available-silicon concentration in soil. (XLS)