Yannick Chaval

French National Institute for Agriculture, Food, and Environment (INRAE) | INRAE · Department of Forest, Grassland and Freshwater Ecology

COVID-19 lockdowns in early 2020 reduced human mobility, providing an opportunity to disentangle its effects on animals from those of landscape modifications. Using GPS data, we compared movements and road avoidance of 2300 terrestrial mammals (43 species) during the lockdowns to the same period in 2019. Individual responses were variable with no c...

The behavioural trade-off between foraging and risk avoidance is expected to be particularly acute during gestation and lactation, when the energetic demands of reproduction peak. We investigated how female roe deer, an income breeding ungulate, adjust their management of this trade-off during the birth period in terms of foraging activity and habi...

Accurate heritability estimates for fitness‐related traits are required to predict an organism’s ability to respond to global change. Heritability estimates are theoretically expected to be inflated if, due to limited dispersal, individuals that share genes are also likely to share similar environments. However, if relatives occupy similar environm...

Understanding the consequences of global change for animal movement is a major issue for conservation and management. In particular, habitat fragmentation generates increased densities of linear landscape features that can impede movements. While the influence of these features on animal movements has been intensively investigated, they may also p...

Toll‐like Receptors (TLR) play a central role in recognition and host frontline defence against a wide range of pathogens. A number of recent studies have shown that TLR genes (Tlrs) often exhibit large polymorphism in natural populations. Yet, there is little knowledge on how this polymorphism is maintained and how it influences disease susceptibi...

The timing of birth has a predominant influence on both the reproductive success of the mother and the life‐history trajectory of her offspring. Because early growth and survival are key drivers of population dynamics, there is an urgent need to understand how global change is affecting reproductive phenology and performance. However, identifying w...

Life histories are strongly age dependent, notably linked to the onset of reproductive maturity and subsequent senescence. Consequently, ageing is predicted to impact behaviour, through the expression of either mating tactics in males or neonatal antipredator tactics in females. However, the influence of ageing, and the associated reproductive acti...

Wildlife populations are increasingly exposed to human-induced modifications of their habitats. To cope with anthropogenicstressors, animals can adjust their behaviour—for example, by shifting their activity to more sheltered habitats, or becomingmore nocturnal.However, whether use of spatial and temporal adjustments in behaviourmay regulate the en...

Because of their continuing expansion, wildlife ruminant species that prosper in rural landscapes may be increasingly affected by and/or contribute to the circulation of certain generalist pathogens also infecting domestic ruminants, when they share common spaces or resources. In this study, we aimed to test the hypothesis that parasitism with gast...

Assessing the evolutionary potential of animal populations in the wild is crucial to understanding how they may respond to selection mediated by rapid environmental change (e.g. habitat loss and fragmentation). A growing number of studies have investigated the adaptive role of behaviour, but assessments of its genetic basis in a natural setting rem...

Understanding how wild animals adapt to perturbations and their consequences for life history traits and population dynamics is a current focus of attention in ecology and conservation biology. Here, we analysed variation in the neutrophil to lymphocyte ratio (N:L ratio), a proxy of stress level, in wild roe deer Capreolus capreolus from three popu...

The Rattini tribe comprises some of the most specious genera in the mammalian kingdom. Many of these species are also highly morphologically conserved. As a result, identifying Rattini tribe animals, particularly those of the Rattus genus, to species level is extremely difficult. Problems with identification of conservative morphologies, particular...

Although inter‐individual heterogeneity in many aspects of dispersal behaviour is widely reported, this key life‐history trait is predominantly modelled as a dichotomous state of philopatry versus dispersal. The increasing body of evidence for dispersal syndromes (i.e. a suite of correlated morphological, behavioural, and life‐history traits associ...

Dispersal is a key mechanism enabling species to adjust their geographic range to rapid global change. However, dispersal is costly and environmental modifications are likely to modify the cost–benefit balance of individual dispersal decisions, for example, by decreasing functional connectivity. Dispersal costs occur during departure, transience an...

The reduction in biodiversity from land use change due to urbanization and agricultural intensification appears to be linked to major epidemiological changes in many human diseases. Increasing disease risks and the emergence of novel pathogens result from increased contact among wildlife, domesticated animals, and humans. We investigated the relati...

The balance between resource acquisition and risk avoidance should vary according to personality type, with potential knock-on effects for fitness. Although previous studies have suggested a link between boldness and fitness components, little evidence is available on the behavioural mechanisms mediating this relationship in the wild. Because habit...

Toll-like Receptors (TLR) play a central role in recognition and host frontline defence against a wide range of pathogens. A number of recent studies have shown that Tlrs often exhibit a large polymorphism in natural populations. Yet, there is little knowledge on how this polymorphism is maintained and how it influences disease susceptibility in th...

Context Routine movements of large herbivores, often considered as ecosystem engineers, impact key ecological processes. Functional landscape connectivity for such species influences the spatial distribution of associated ecological services and disservices. Objectives We studied how spatio-temporal variation in the risk-resource trade-off, genera...

Because avoiding predation is crucial for fitness, foraging animals must trade acquisition of high-quality resources against risk avoidance when the best resources occur in locations with high predation risk. Although optimality models predict the distance at which an animal should initiate vigilance and flight, many studies have shown that animals...

Recent phylogenetic studies and taxonomic reviews have led to nearly complete resolution of the phylogenetic divisions within the old world rats and mice (Muridae, Murinae). The Micromys division and Pithecheir division are two notable exceptions where groupings of species into these divisions based on morphology and arboreal lifestyle have not bee...

This review aims to synthesise knowledge regarding the taxonomy of South-east Asian murine rodents and the challenges associated with the identification of habitat preferences and associated rodent-borne diseases. Recent studies concerning the Rattini tribe have identified unclear species boundaries that would benefit from further investigation. Th...

1.While the effects of deforestation and habitat fragmentation on parasite prevalence or richness are well investigated, host-parasite networks are still understudied despite their importance in understanding the mechanisms of these major disturbances. Because fragmentation may negatively impact species occupancy, abundance and co-occurrence, we pr...

1.We tested how habitat structure and fragmentation affect the spatial distribution of common murine rodents inhabiting human-dominated landscapes in southeast Asia. The spatial distribution patterns observed for each rodent species were then used to assess how changes in habitat structure may potentially affect the risk of several major rodent-bor...

A survey of Bartonella spp. from 275 rats purchased in food markets (n = 150) and trapped in different ecosystems (rice field, forest, and animal farms) (n = 125) was carried out during October, 2012–March, 2013, in the Mekong Delta of Vietnam. The overall Bartonella spp. prevalence detected by culture and PCR in blood was 14.9% (10.7– 19.1%), the...

In the Mekong Delta in southern Vietnam, rats are commonly traded in wet markets and sold live for food consumption. We investigated seroprevalence to selected groups of rodent-borne viruses among human populations with high levels of animal exposure and among co-located rodent populations. The indirect fluorescence antibody test (IFAT) was used to...

Bandicoot rats are a widespread species in Asia. Throughout their distribution, bandicoot rats are of high sanitary importance as reservoirs of at least 10 human diseases. In mainland Thailand, Cambodia, Laos, and Vietnam, where two species coexist, taxonomic distinction based on external characters is difficult and may lead to a certain proportion...

Background Leptospirosis is the most common bacterial zoonoses and has been identified as an important emerging global public health problem in Southeast Asia. Rodents are important reservoirs for human leptospirosis, but epidemiological data is lacking. Methodology/Principal Findings We sampled rodents living in different habitats from seven loca...

In highly fluctuating populations with complex social systems genetic patterns are likely to vary in space and time due to demographic and behavioural processes. Cyclic rodents are extreme examples of demographically instable populations that often exhibit strong social organisation. In such populations, kin structure and spacing behaviour may vary...

L’Asie du Sud-Est est un point chaud de la biodiversité et, dans le même temps, cette région est un foyer actif d’émergence ou de réémergence de zoonoses (SRAS, grippes aviaires, leptospirose, roboviroses etc..). Le développement économique sans précédent et la croissance démographique humaine que connait la zone biogéographique indochinoise sont u...

For sustainable oil palm production, barn owl (Tyto alba) predation should be enhanced and monitored to better understand its impact on rodent population dynamics, notably for selective predation based on age or size. Our aim was to assess the best combination of osteometric variables that predict eye lens weight and thus the relative age of an ind...

Recently, Balakirev et al. (2013) presented a taxonomic revision of the genus Leopoldamys based on phylogenetic analyses. They identified five main Leopoldamys genetic lineages and suggested to rename several of them. According to these authors, the genetic lineage previously thought to belong to L. edwardsi (lineage L1) should be assigned to L. re...

SUMMARY Toxoplasmosis is largely present in rural areas but its spatial distribution in this environment remains poorly known. In particular, it is unclear if areas of high density of cats, the only hosts excreting Toxoplasma gondii, constitute foci of high prevalence. To improve our understanding of the spatial distribution of T. gondii in rural a...

SUMMARY This study investigated the molecular prevalence of Trypanosoma lewisi and T. evansi in wild rodents from Cambodia, Lao PDR and Thailand. Between 2008 and 2012, rodents (and shrews) were trapped in nine locations and 616 of these were tested using three sets of primers: TRYP1 (amplifying ITS1 of ribosomal DNA of all trypanosomes), TBR (ampl...

The transfer of maternal antibodies is a critical mechanism for the early life survival of vertebrate newborns. In mammals, passive transfer of immune compounds can occur prenatally through the placenta and postnatally through the consumption of colostrum and milk. In social mammals, it has been hypothesized that allosuckling may be a way for pups...

Predicting habitats prone to favor disease transmission is challenging due to confounding information on habitats, reservoirs, and diseases. Comparative analysis, which aims at investigating ecological and evolutionary patterns among species, is a tool that may help. The emergence of zoonotic pathogens is a major health concern and is closely linke...

The helminth communities of wild murid rodents were investigated in Luang Prabang and Champasak province, Lao PDR. Thirteen species of rodents (404 individuals) were infected by 19 species of parasites (2 trematode, 3 cestode, 14 nematode species). Four of the recorded helminth species (Echinostoma malayanum, Raillietina sp., Hymenolepis diminuta a...

Le campagnol roussâtre Myodes glareolus est le réservoir de l’hantavirus Puumala (PUUV), responsable chez l’Homme d’une forme atténuée de Fièvre Hémorragique à Syndrome Rénal (FHSR), la Néphropathie Épidémique (NE). En Europe, l’incidence de la NE présente, malgré la distribution continue du réservoir, une forte variabilité géographique dont les ca...

Black rats are major invasive vertebrate pests with severe ecological, economic and health impacts. Remarkably, their evolutionary history has received little attention, and there is no firm agreement on how many species should be recognized within the black rat complex. This species complex is native to India and Southeast Asia. According to curre...

We investigated infection of rodents and shrews by Leptospira spp. in two localities of Cambodia (Veal Renh, Kaev Seima) and in four types of habitat (forests, non-flooded lands, lowland rain-fed paddy fields, houses) during the wet and the dry seasons. Habitat preference was common, and rodent and shrew species were found only in houses or in rain...

In this study, we investigated the molecular evidence of Trypanosoma evansi in wild rodents from Cambodia, Lao PDR and Thailand. Between November 2007 and June 2009, 1664 rodents were trapped at eight sites representative of various ecological habitats. Of those animals, 94 were tested by direct microscopic blood examination, 633 using the Card Agg...

The oriental rat or Rattus tanezumi is not common in the valley of Manipur and seem to be exclusively concentrated on the small hillock called, Karang located on the famous lake called The Loktak Lake of Manipur. Fifteen live specimens were trapped using Sherman’s wire traps from the area and brought to the laboratory as soon as possible. Morphomet...

In order to evaluate the circulation of hantaviruses present in southeast Asia, a large scale survey of small mammal species was carried out at seven main sites in the region (Cambodia, Lao People's Democratic Republic, and Thailand). Small scale opportunistic trapping was also performed at an eighth site (Cambodia). Using a standard IFA test, IgG...

Rodent host dynamics and dispersal are thought to be critical for hantavirus epidemiology as they determine pathogen persistence and transmission within and between host populations. We used landscape genetics to investigate how the population dynamics of the bank vole Myodes glareolus, the host of Puumala hantavirus (PUUV), vary with forest fragme...

Puumala virus, the agent of nephropathia epidemica (NE), is the most prevalent hantavirus in Europe. The risk for human infection seems to be strongly correlated with the prevalence of Puumala virus (PUUV) in populations of its reservoir host species, the bank vole Myodes glareolus. In humans, the infection risks of major viral diseases are affecte...

“Protocols for field and laboratory rodent studies” present the best practices for the studies of rodents and rodent-borne pathogens and parasites from the field to the laboratory. It aims at covering the different steps of rodent studies: 1) Trapping, 2) Dissection and preparation of tissue samples for pathogens screening, 3) Identification of spe...

Protocols for field and laboratory rodent studies” is a publication generated by the CERoPath project (Community Ecology of Rodents and their Pathogens in a changing environment, www.ceropath.org) funded by the French Ministry of Research from 2008 to 2011 (French ANR Biodiversity ANR 07 BDIV 012). This book was written and compiled by the various...

“Protocols for field and laboratory rodent studies” present the best practices for the studies of rodents and rodent-borne pathogens and parasites from the field to the laboratory. It aims at covering the different steps of rodent studies: 1) Trapping, 2) Dissection and preparation of tissue samples for pathogens screening, 3) Identification of spe...

The tumor necrosis factor-alpha (TNF-α) influences the ability to limit parasite infection but its over-production might result in inflammatory disorders. The level of Tnf-α gene expression could thus mediate a balance of tolerance/resistance to infections. This study focused on Puumala hantavirus (PUUV) infection in its rodent host, the bank vole...

Wildlife surveys rely on an accurate taxonomic framework. Identification tools used to reach this goal are not equivalent and may depend on several objectives and constraints, including sampling conservation difficulties, the invasiveness of the sampling techniques, sampling capacity, the relevance of the results, materials needed, the cost and the...

Rodents are recognized as hosts for at least 60 zoonotic diseases and may represent a serious threat for human health. In the context of global environmental changes and increasing mobility of humans and animals, contacts between pathogens and potential animal hosts and vectors are modified, amplifying the risk of disease emergence. An accurate ide...

Lineage-through-time plot based on the Multidivtime ultrametric tree. The sudden increase in branching rate, indicated by a red line, corresponds to the shift from interspecific to intraspecific lineage branching.

Rat 85 pb cytb alignment. The whole cytb sequences obtained from the 122 specimens selected in this study were reduced to the 85 bp DNA marker already used to discriminate closely related species from degraded DNA [56,57]. Small sequences were sorted following the results of the DNA-based species delimitation method. Dots indicate identical positio...

Heterogeneities in immune responsiveness may affect key epidemiological parameters and the dynamics of pathogens. The roles of immunogenetics in these variations remain poorly explored. We analysed the influence of Major histocompatibility complex (Mhc) genes and epigamic traits on the response to phytohaemagglutinin in males from cyclic population...

Karyotypes of 18 rodent species collected in various localities in Thailand were analysed as part of an epidemiological survey of the region using conventional cytogenetic techniques. The aim was to re-assess the reliability of karyotype-based diagnoses of Thai rodents using an updated taxonomic framework. The species examined include Menetes berdm...

Hantaviruses belong to the Bunyaviridae family. While usually hosted by wild mammals, they are potentially pathogenic for humans, and several serologically distinct groups associated with different syndromes have been identified. Yet, investigations have mostly been conducted where human infections by hantaviruses constitute a real and well-identif...

Mieux connaître le phénomène de pullulation du campagnol terrestre est nécessaire pour lutter plus efficacement contre ce " dévastateur des prairies ". Cela exige de se placer à plusieurs échelles spatiales différentes. De l'étude du comportement individuel (échelle parcellaire) jusqu'à l'extension de ses populations (échelle régionale), plusieurs...