Yan Hua

• Research Director at Guangdong Academy of Forestry

A high-quality reference genome coupled with resequencing data is a promising strategy to address issues in conservation genomics. This has greatly enhanced the development of conservation plans for endangered species. Pangolins are fascinating animals with a variety of unique features. Unfortunately, they are the most trafficked wild animal in the...

The burrow microhabitats created by burrowing mammals, as a hotspot for biodiversity distribution in ecosystems, provide multiple critical resources for many other sympatric species. However, the cascading effects of burrow resources on sympatric animal community assemblages and interspecific interactions are largely unknown. During 2020–2023, we m...

Background Pangolin is one of the most endangered mammals with many peculiar characteristics, yet the understanding of its sensory systems is still superficial. Studying the genomic basis of adaptation and evolution of pangolin’s sensory system is expected to provide further potential assistance for their conservation in the future. Results In thi...

Pangolins have been found to carry severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-related coronaviruses. In light of this discovery, interest has been piqued in viromes of these heavily trafficked wild animals. In this study, we performed viral metagenomic sequencing to explore viromes of both confiscated dead pangolins and captive he...

Background Wood-feeding termites have been employed as sources of novel and highly efficient lignocellulolytic enzymes due to their ability to degrade lignocellulose efficiently. As a higher wood-feeding termite, Globitermes sulphureus (Blattaria: Termitidae) plays a crucial role as a decomposer in regions such as Vietnam, Singapore, Myanmar, and Y...

Simple Summary The Indian pangolin, an endangered species found in Pakistan, was studied in the Nowshera district to assess its population and suitable habitat. We used the line transect method and recorded 56 signs of pangolins, including burrows and digging, over a 156 km² area. The estimated population was very low, with only 29 individuals and...

The excavation of Chinese pangolin ( Manis pentadactyla ) is expected to alter habitat heterogeneity and thus affect the functioning and structure of forest ecosystems. In this study, the bioturbation of Chinese pangolin on forest soils in three regions (Heping, Tianjingshan, and Wuqinzhang) across Guangdong province was quantified. Overall, a mean...

Unprotected areas with endangered species generally face severe human disturbance. Domestic dogs are a special form of human disturbance and are sympatrically distributed with critically endangered Chinese pangolins in remote mountainous regions of Guangdong, China. Conflicts in habitat utilization between domestic dogs and Chinese pangolins have r...

The Chinese pangolin (Manis pentadactyla, MP) has been extensively exploited and is now on the brink of extinction, but its population structure, evolutionary history, and adaptive potential are unclear. Here, we analyzed 94 genomes from three subspecies of the Chinese pangolin and identified three distinct genetic clusters (MPA, MPB, and MPC), wit...

The Chinese pangolin (Manis pentadactyla) is a critically endangered species. However, there is a paucity of research on the male reproductive gamete biology of this species. The present study was the first to systematically analyse the sperm characterization of the Chinese pangolin, including semen collection, sperm morphometry and ultrastructure....

Simple Summary Researching and developing an automated and intelligent method to monitor the pangolin breeding process can effectively help human observation, analysis, breeding and daily behavior studies of pangolins, and has significant implications for the protection and breeding research of pangolin populations. In this paper, a pangolin breedi...

Background Hemangiomas are a relatively common type of tumor in humans and animals. Various subtypes of hemangiomas have been described in the literature. The classification methods for hemangiomas differ between human and veterinary medicine, and the basis for tumor classification can be found in the literature. Case presentation This study descr...

As one of the four extant species of Asian pangolins, the Indian Pangolin Manis crassicaudata is the only species found in Pakistan that is enlisted endangered due to trafficking and illegal trade. The current study investigated the factors affecting pangolin presence in the ravine habitats of Margalla Hills National Park, Islamabad, Pakistan. Betw...

Circoviruses are a group of small circular, single-stranded DNA viruses that belong to the family Circoviridae. They are known to infect a wide variety of animals. Rhizomys sinensis is a species of rodent that is the reservoir of many zoonotic pathogens. Our previous study identified many sequencing reads mapped to the genome of viruses in Circovir...

Background Archipelagos and oceanic islands often present high percentage of endemism due to rapid speciation. The Malayan pangolin is a species distributing at both mainland (southern Yunnan, China) and oceanic islands via Malayan peninsula, which may result in deep differentiation among populations. In-depth investigation of population structure...

The Chinese pangolin is an endangered species, and ex situ conservation and captive rescue are important conservation measures. This requires reliable information on nutritional energy requirements and expenditure characteristics. However, we lack sufficient knowledge of their energy physiology to determine their energy requirements for maintenance...

Background Escherichia fergusonii is a common conditionally pathogenic bacterium that infects humans and animals. E. fergusonii has been reported to cause diarrhea, respiratory disease, and septicemia, but it is rarely reported to cause skin infections in animals. E. fergusonii has been isolated from the skin and muscular tissue of Chinese pangolin...

Simple Summary The Sunda pangolin (Manis javanica) and Chinese pangolin (Manis pentadactyla) are critically endangered mammals, and there is limited information on their blood physiological reference values in the literature. Venous blood was collected from wild healthy Sunda pangolins (M. javanica) and Chinese pangolins (M. pentadactyla) before an...

Anthropogenic and climatic factors affect the survival of animal species. Chinese pangolin is a critically endangered species, and identifying which variables lead to local extinction events is essential for conservation management. Local chronicles in China serve as long‐term monitoring data, providing a perspective to disentangle the roles of hum...

Background: Chinese pangolin (Manis pentadactyla), one of the most endangered species in the world, has suffered a sharp decline due to heavy hunting and illegal trade. The artificial diet has difficulty satisfying the nutritional needs of captive pangolins, and it has become one of the main factors limiting the development of ex-situ conservation...

Background Pleistocene climate fluctuations have strongly modified species genetic diversity and distributions. The Chinese pangolin (Manis pentadactyla) has been recognized as a critically endangered animal due to heavy poaching and trafficking. However, the effect of Pleistocene climate fluctuations on the genetic diversity and spatial distributi...

Poaching and trafficking have a substantial negative impact on the population growth and range expansion of the Chinese pangolin ( Manis pentadactyla ). However, recently reported activities of Chinese pangolins in several sites of Guangdong province in China indicate a promising sign for the recovery of this threatened species. Here, we re-sequenc...

Global warming is deeply influencing various ecological processes, especially regarding the phenological synchronization pattern between species, but more cases around the world are needed to reveal it. We report how the forest leaf phenology and ungulate molting respond differently to climate change, and investigate whether it will result in a pot...

Background: The exact animal origin of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) remains obscure and understanding its host range is vital for preventing interspecies transmission. Methods: Herein, we applied single-cell sequencing to multiple tissues of 20 species (30 data sets) and integrated them with public resources (45 d...

Coronavirus infections cause diseases that range from mild to severe in mammals and birds. In this study, we detected coronavirus infections in 748 farmed wild animals of 23 species in Guangdong, southern China, by RT–PCR and metagenomic analysis. We identified four coronaviruses in these wild animals and analysed their evolutionary origins. Corona...

The masked palm civet (Paguma larvata) is a small carnivore with distinct biological characteristics, that likes an omnivorous diet and also serves as a vector of pathogens. Although this species is not an endangered animal, its population is reportedly declining. Since the severe acute respiratory syndrome (SARS) epidemic in 2003, the public has b...

The availability of viral entry factors is a prerequisite for the cross-species transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Large-scale single-cell screening of animal cells could reveal the expression patterns of viral entry genes in different hosts. However, such exploration for SARS-CoV-2 remains limited. Here,...

Interspecific interactions of commensal non-native species such as domestic dogs and livestock with native wildlife are evident issues in protected areas (PAs). We studied spatiotemporal interactions by combining camera trap photographic sampling over three years. We used a generic multiseason occupancy and co-occurrence analysis and kernel density...

The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) issued a significant and urgent threat to global health. The exact animal origin of SARS-CoV-2 remains obscure and understanding its host range is vital for preventing interspecies transmission of this virus. Previously, we have assessed the target cell profiles of SARS-Co...

Civets are small mammals belonging to the family Viverridae . The masked palm civets ( Paguma larvata ) served as an intermediate host in the bat-to-human transmission of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2003 ¹ . Because of their unique role in the SARS outbreak, civets were suspected as a potential intermediate host of S...

Ecosystem engineers are organisms that alter the distribution of resources in the environment by creating, modifying, maintaining and/or destroying the habitat. They can affect the structure and function of the whole ecosystem furthermore. Burrowing engineers are an important group in ecosystem engineers as they play a critical role in soil translo...

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The coronavirus disease 2019 (COVID-19) outbreak has significantly affected international public health safety. It has been reported that the pathogen severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes COVID-19, could originate from bats and utilize the Malayan pangolin (Manis javanica) as an intermediate host. To gain furth...

Simple Summary The American mink (Neovison vison) is one of the best-known and most widespread invasive species in China and worldwide. To investigate the genetic characteristics and increase comprehension of the invasiveness process for this species, we compared the genetic characteristics of farmed and feral populations in northeastern China usin...

Both terrestrial and aquatic food webs are characterized by similar key parameters: connectance, robustness, and linkage. Ecosystems vary in basic structures and by processes that govern their dynamics and complexity. A study of complexity, connectance and link density in terrestrial and aquatic food webs, was conducted. We used 49 food webs apport...

Background: Gut microbes significantly contribute to nutrient digestion and absorption, intestinal health and immunity, and are essential for the survival and environmental adaptation of wild animals. However, there are few studies on the gut microbiota of captive and wild North China leopard (Panthera pardus japonensis). Results: A total of 10...

Hair morphological structure is widely utilized for species identification based on the differentiation of scales and medullar pattern of mammal hairs. To determine what may influence the accuracy of identification using hair morphology, we measured and calculated 11 parameters of hair morphometry of 10 deer species in China. Our results suggested...

China has four sub-species of leopard throughout the country. One of them is the North China leopard (Panthera pardus japonensis, Gray, 1862) which experiences a wide range of threats. It remains at the centre of interest for recent research and new management policies within its natural habitat. Due to limited studies for a long time, its current...

China has four sub-species of leopard throughout the country. One of them is the North China leopard (Panthera pardus japonensis, Gray, 1862) which experiences a wide range of threats. It remains at the centre of interest for recent research and new management policies within its natural habitat. Due to limited studies for a long time, its current...

Simple Summary Carnivores are among the threatened mammal species due to interactions with humans and environmental effects. We collected data using camera traps across three sampling periods over three years, aiming to study the coexistence mechanisms of three carnivores: the North Chinese leopard, the leopard cat, and the red fox to depict effect...

Background: Gut microbes significantly contribute to nutrient digestion and absorption, intestinal health and immunity, and are essential for the survival and environmental adaptation of wild animals. However, there are few studies on the gut microbiota of captive and wild North China leopard (Panthera pardus japonensis). Results: A total of 10 mai...

Background: Gut microbes significantly contribute to nutrient digestion and absorption, intestinal health and immunity, and are essential for the survival and environmental adaptation of wild animals. However, there are few studies on the gut microbiota of captive and wild North China leopard (Panthera pardus japonensis). Results: A total of 10 mai...

Background: Gut microbes significantly contribute to nutrient digestion and absorption, intestinal health and immunity, and are essential for the survival and environmental adaptation of wild animals. However, there are few studies on the gut microbiota of captive and wild North China leopard (Panthera pardus japonensis). Results: A total of 10 mai...

Background: Gut microbes significantly contribute to nutrient digestion and absorption, intestinal health and immunity, and are essential for the survival and environmental adaptation of wild animals. However, there are few studies on the gut microbiota of captive and wild North China leopard (Panthera pardus japonensis). Results: A total of 10 mai...

The Chinese pangolin (Manis pentadactyla) is an extremely endangered species, it has been banned from international trade due to a sharp decline of the population number in China. It is difficult to distinguish among subspecies, thus making it entangled in law enforement. In order to clarify this chaos, we determined and annotated the whole mtDNA g...

Simple Summary One of the main conservation issues, both locally and globally, is the issue of human-wildlife conflict. Losses of livestock due to predation by carnivores such as leopards has become a common problem. Residents share negative attitudes toward leopards due to conflicts over the depredation of livestock. Using data obtained from Leagu...

We used a total of 589 independent photos of three species — the leopard cat (Prionailurus bengalensis), red fox (Vulpes vulpes) and North China leopard (Panthera pardus japonensis) — from 81 camera traps to study coexistence of those sympatric carnivores. We computed an occupancy model and ran single-season and two-pecies models to examine pattern...

The outbreak of a novel corona Virus Disease 2019 (COVID-19) in the city of Wuhan, China has resulted in more than 1.7 million laboratory confirmed cases all over the world. Recent studies showed that SARS-CoV-2 was likely originated from bats, but its intermediate hosts are still largely unknown. In this study, we assembled the complete genome of...

Commercial farming of endangered wildlife has potential to reduce poaching pressure on wild populations. However, poached products can be laundered as farmed products. A method for separating farmed from wild products is therefore essential for effective law enforcement. Meat (skeletal muscle) is a wildlife product whose origin cannot be correctly...

The roe deer (Capreolus capreolus mantschurivus) is the main prey of the Amur tigers and leopards in the northeast of China. The population genetics of roe deer is closely related to the conservation and management of the endangered species. We first determined and annotated the whole mtDNA genome of the C. capreolus mantschurivus to better underst...

The outbreak of 2019-nCoV pneumonia (COVID-19) in the city of Wuhan, China has resulted in more than 60,000 laboratory confirmed cases, and recent studies showed that 2019-nCoV (SARS-CoV-2) could be of bat origin but involve other potential intermediate hosts. In this study, we assembled the genomes of coronaviruses identified in sick pangolins. Th...

Members of genus Martes provide early warning signals about forest ecosystem health and are designated as a Management Indicator Species (MIS). As one of the most widespread members in Martes, the sable (Martes zibellina) is a circumboreal small predator found throughout all taiga zoogeographical zones of Eurasia and shows distinct population diffe...

The muskrat Ondatra zibethicus is native to North America, However it has successfully dispersed into most areas of northeast China in the past decades, which may lead to potential impact on endemic eco-system. We determined and annotated the whole mtDNA genome of the muskrat O. zibethicus to better understand the evolutionary relationship of this...

Pangolin exploitation has recently increased in diverse forms such as bush-meat consumption; species or parts trade, medical use. This species is pro-tected in DRC and worldwide, unfortunately it is threatened by numerous human actions. The purpose of this study was to determine the profiles of actors using pangolins, the reasons for pangolin explo...

Reintroduction is an important strategy to restore or re-establish wild populations of endangered species. Pre-release training is a necessary step to ensure post-reintroduction survival. However, studies reported contradicting outcomes after pre-release training of juveniles and adults. This study used farmed and feral American mink (Neovison viso...

A small, isolated Amur tiger population is living at the southwest Primorskii Krai in Russia and Hunchun in China region. Many of them with “dual nationality” cross the border frequently. Formulating effective conservation strategies requires a clear understanding of tiger food requirements in both Russia and China sides, while Russia side already...

Global biodiversity conservation has recently focused on the roles of land management strategies of land sharing vs. land sparing. However, few studies have evaluated the roles of social and ecological interactions in modifying the effectiveness of land management for top predator conservation. Using a 65-year dataset from northeastern China, we ev...

The American mink, Neovison vison, is native to North America and listed as one of the most widely distributed invasive species into the Eurasian mainland. Even though facing serious over-hunting and habitat degradation problems, this species has successfully dispersed into most areas of northeast China in the past decades, which may have a huge im...

The Asian badger (Meles leucurus amurensis) is widely distributed throughout the northeast of China, and plays an important role in regulating the prey population stability of forest eco-system as mesopredators. We first determined and annotated the whole mtDNA genome of the Asian badger Meles leucurus amurensis to better understand the evolutionar...

Over-hunting of the sable (Martes zibellina) in China since the 1950s has resulted in a dramatic decline of sable population size; and owing to effective conservation measures in recent years, sable populations in some areas are going through a rapid recovery. We first determined and annotated the whole mtDNA genome of the Lesser Khingan Mountains...

Utilization of free-living populations of endangered wildlife species is usually strictly prohibited or restricted. Farming of endangered species can provide products that are in demand as a countermeasure. A novel forensic issue arises because it becomes necessary to discriminate the origin of given wildlife products. We tested the effectiveness o...