X. Y. Zhou

• Huazhong Agricultural University

DNA methylation-mediated transcriptional regulation has been considered to significantly impact some steroidogenic enzyme genes expression. To uncover the roles of DNA methylation on the regulation of aromatase gene expression during gametogenesis in Misgurnus anguillicaudatus, the expression profiles and cellular localization of cyp19a1a and cyp19...

The diploids and tetraploids of cyprinid loach Misgurnus anguillicaudatus coexist in many natural habits. The tetraploids generally exhibit superior growth performance and delayed gonadal development compared with diploids. To investigate the regulation mechanism of growth superiority and ovarian development in tetraploids, we first conducted a lon...

The immense hydrological changes in the Yangtze River basin during the last decades have had drastic effects on the Yellowcheek Elopichthys bambusa migration rate and its population structure. As a consequence, the declining population size of the E. bambusa populations raises concern in terms of sustainability of their genetic integrity and conser...

Triplophysa tenuis is an important indigenous fish in the Xinjiang Tarim River. In this study, we collected 120 T. tenuis individuals from 8 T. tenuis populations in the Tarim River. Through genotyping-by-sequencing (GBS), a total of 582,678,756 clean reads were generated for all the genotypes, and after quality filtering, 595,379 SNPs were obtaine...

Simple Summary The distribution of Kashgarian loach (Triplophysa yarkandensis) is limited to the Tarim River basin, which is the largest inland river in China. However, the population size of T. yarkandensis has been diminishing, and it is critically endangered in the Tarim River basin due to the gradual depletion of water resources, together with...

In teleost, pigment in the skin and scales played important roles in various biological processes. Iridophores, one of the main pigment cells in teleost, could produce silver pigments to reflect light. However, the specific mechanism of the formation of silver pigments is still unclear. In our previous study, some transparent mutant individuals wer...

Epidermal growth factor (EGF) is a potent regulator of cell function in many cell types. In mammals, the EGF/EGFR system played an important role in both pituitary physiology and pathology. However, it is not clear about the pituitary action of EGF in lower vertebrates. In this study, using grass carp as a model, we found that EGF could stimulate N...

Teleost fish are the most primitive bony vertebrates that contain immunoglobulin (Ig). Although teleost Ig is known to be important during tetrapod evolution and comparative immunology, little is known about the genomic organization of the immunoglobulin heavy-chain (IgH) locus. Here, three Ig isotype classes, IgM, IgD and IgT, were firstly identif...

The topmouth gudgeon, Pseudorasboraparva (Temminck & Schlegel, 1842), is a small cyprinid fish that inhabits the littoral zones of freshwater habitats throughout Asia and Europe. It is regarded as an invasive species in Europe, but in its native range, in China, as food and as an environmental bio-indicator. In this study, the embryonic and larval...

Reconstruction and annotation of transcripts, particularly for a species without reference genome, plays a critical role in gene discovery, investigation of genomic signatures, and genome annotation in the pre-genomic era. This study generated 33,330 full-length transcripts of diploid M. anguillicaudatus using PacBio SMRT Sequencing. A total of 6,9...

The co-existence of several ploidy types in natural populations makes the cyprinid loach Misgurnus anguillicaudatus an exciting model system to study the genetic and phenotypic consequences of ploidy variations. A first step in such effort is to identify the specific ploidy of an individual. Currently popular methods of karyotyping via cytological...

Length distribution of all the unigenes generated by de novo assembly. (TIF)

Ploidy level estimation of 96 randomly selected Misgurnus anguillicaudatus from Liangzi Lake, China, using two separate methods: EST-SSR markers and flow cytometry. (XLS)

Gel images of the 69 reference specimens and 96 ploidy-unknown specimens. (DOCX)

Ploidy level estimation of 69 reference Misgurnus anguillicaudatus using the five diagnostic ESR-SSR markers. (XLS)

Characteristics of 45 EST-SSR markers validated in a survey of 32 diploid individuals from transcriptome sequences of Misgurnus anguillicaudatus. (XLSX)

Characteristics of the EST-SSR loci and their corresponding primer pairs developed from Misgurnus anguillicaudatus transcriptome sequences. (XLSX)

Misgurnus anguillicaudatus, an important aquatic species, is mainly distributed in the Yangtze River basin. To reveal the population genetic structure of M. anguillicaudatus distributed in the Yangtze River basin, genotyping by sequencing (GBS) technique was employed to detect the genome wide genetic variations of M. anguillicaudatus. A total of 30...

Diploids and tetraploids of the cyprinid loach Misgurnus anguillicaudatus coexist in many natural habitats in Asia. However, little is known about the biological and ecological differences between these two ploidy forms. We examined age, body size and growth rates of fish in a mixed ploidy population of M. anguillicaudatus in the Yangtze River basi...

Background: The blunt snout bream, Megalobrama amblycephala , is the economically most important cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource-conserving aquaculture. However, the large number of intermuscular bones in the trunk musculature is adverse to fish meat processing and consumption. Results: As a f...

The fish fauna in the Yangtze-based riparian ecosystem has been imperiled largely due to genetic degradation of populations. Regular genetic monitoring of the fish populations is required for an effective management and conservation. The genetic structure of Dojo loach, Misgurnus anguillicaudatus was investigated in twelve populations originating f...

The genetic structure of Labeo rohita in hatchery stocks of the province Punjab was assessed by using five species-specific microsatellite markers. The samples of L. rohita were collected from six selected hatcheries. The genotypic data of each sample was generated through PCR amplification of target loci and allelic scoring by gel electrophoresis....

Identifying the dispersal pathways of an invasive species is useful for adopting the appropriate strategies to prevent and control its spread. However, these processes are exceedingly complex. So, it is necessary to apply new technology and collect representative samples for analysis. This study used Approximate Bayesian Computation (ABC) in combin...

A screening of ploidy level in 2146 individuals from 52 populations of the loach Misgurnus anguillicaudatus in China was performed. Ploidy level variation and its geographical distribution in this study was combined with previously reported data from another 28 populations. Two major (2n = 50, 4n = 100) and three minor (3n = 75, 5n = 125, 6n = 150)...

Length-weight relationships (LWRs) of diploid and tetraploid loach Misgurnus anguillicaudatus from the Yangtze River basin, China were estimated and compared.

Misgurnus anguillicaudatus has several natural ploidy types. To investigate whether nuclear polyploidy have an impact on mitochondrial DNA (mtDNA), the complete mitochondrial genomes (mitogenomes) of five distinct ploidy M. anguillicaudatus (natural diploid, triploid, tetraploid, pentaploid and hexaploid), which were collected in central China, wer...

Abstract The complete mitochondrial genome of the Amur weatherfish, Misgurnus mohoity is a circular molecule of 16,566 bp in size, containing 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and 2 main non-coding regions (the control region and the origin of the light strand replication). Most of the genes are en...

Abstract The mitochondrial genome of the natural tetraploid loach Misgurnus anguillicaudatus is a circular molecule of 16,645 bp in length, containing 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two main noncoding regions (the control region and the origin of the light strand replication). Most of the...

To determine the genotype with better traits for aquaculture practices of the loach, factorial crosses were made among diploid (D), tetraploid (T) dojo loach, Misgurnus anguillicaudatus, and large-scale loach, Paramisgurnus dabryanus (P), producing DD, DT, DP, TD, TT, TP, PD, PT, and PP genotypes (female listed first). The growth performance and su...

Abstract The complete mitochondrial genome of the natural hexaploid loach Misgurnus anguillicaudatus is a circular molecule of 16,643 bp in size, containing 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and 2 main noncoding regions (the control region and the origin of the light strand replication). Most of the...

Natural occurrence of pentaploid loach, Misgurnus anguillicaudatus discovered from Liangzi Lake area, Hubei Province, central China, is reported here for the first time. The evidences from karyotyping, DNA content analysis and nuclear volume measurements were described to confirm the pentaploid nature of the identified individual. This individual w...

Yellowcheek carp (Elopichthys bambusa) is the only species of genus Elopichthys. It is widely distributed in Chinese freshwaters but currently its populations have declined to threatening level. We examined the genetic diversity and population structure of E. bambusa in the Yangtze River basin. A total of nine polymorphic microsatellite markers wer...

Natural occurrence of hexaploid loach Misgurnus anguillicaudatus detected in central China is reported here for the first time. The evidences from karyotyping, DNA content analysis and nuclear volume measurements were described to confirm the hexaploid nature of the identified individual.

To determine the cytotype with better traits for the aquaculture practices of the dojo loach Misgurnus anguillicaudatus from the viewpoint of fish farming improvement, factorial crosses (2n♀×2n♂, 2n♀×4n♂, 4n♀×2n♂, 4n♀×4n♂) were conducted between natural diploids (D) and tetraploids (T), producing DD, DT, TD, and TT groups (female listed first). The...

Haematological and serum biochemistry parameters were studied and compared between cultured and wild ecotypes of Dojo loach Misgurnus anguillicaudatus during the prime fishing season, i.e. May-August. Data were analysed for the impact of feeding regime and other ecological conditions on the physiology of fish. The results revealed that haemoglobin,...

In search for an easy, rapid and cost-effective method to determine the ploidy levels of diploid and tetraploid dojo loaches Misgurnus anguillicaudatus distributed naturally in China, direct (karyotyping) and indirect (flow cytometry, erythrocyte nuclear measurements and morphometric analysis) methods were compared. The results revealed that all te...

The purpose of this study was to determine whether diploid, triploid and tetraploid loach (Misgurnus anguillicaudatus) differed in terms of their main haematological and physiological characteristics. Diploid and tetraploid fish were produced by crossing of natural diploids (2n x 2n) and natural tetraploids (4n x 4n), respectively. Triploid fish we...