Uta Berger

• PhD
• Professor (Full) at TUD Dresden University of Technology

The effects of global change pose major challenges for both practical forest management and forest ecological research if European forests are to be managed in such a way that they can continue to provide their many services to people in the future. The number of studies on impacts of global change on forest ecosystems has increased enormously over...

Ecology traditionally has been fragmented into separate branches that emphasise different localities, ecosystems, habitats, levels of organisation, applications, etc., and that use distinct terminologies and methods. Individual-based ecology (IBE) can unify these branches. By taking into account the variation, behaviours, and interactions of indivi...

Tropical saltmarshes share the intertidal zone with mangroves. In contrast to saltmarshes of temperate latitudes, these only occupy the uppermost niche of the intertidal zone, and are characterised by periods of severe drought and hypersalinity in the upper soil during dry seasons. Like mangroves, they show pronounced species zonation patterns alon...

Mangroves thrive in the intertidal zone but face limits under extreme conditions. Hypersalinity in tidally impaired areas can restrict their natural establishment. This study investigates whether coring artificial holes, or macropores, which mimic crab burrows to enhance soil aeration, improve water infiltration, and reduce salinity, can enhance ma...

Replicating existing models and their key results not only adds credibility to the original work, it also allows modellers to start model development from an existing approach rather than from scratch. New theory can then be developed by changing the assumptions or scenarios tested, or by carrying out more in-depth analysis of the model. However, m...

Rapid sea level rise (SLR) represents a novel threat to mangroves, which could adapt through vertical accretion or landward expansion. Depending on tidal conditions and stressors, managers will likely have to intervene to enhance the adaptive capacity of mangroves. However, managers must be aware of, understand, and anticipate the risks of SLR-indu...

Implementing good modelling practices (GMP) in ecological sciences is key to improving scientific reliability. Despite the increased availability of guidelines and protocols detailing how principles such as FAIR and PERFICT can be implemented to improve good modelling practices, the sharing of code which can reproduce results and workflows remains...

Despite the increasing use of standards for documenting and testing agent-based models (ABMs) and sharing of open access code, most ABMs are still developed from scratch. This is not only inefficient, but also leads to ad hoc and often inconsistent implementations of the same theories in computational code and delays progress in the exploration of...

Agent-based vegetation models are a widely used tool in ecology, for example, to understand and predict the response of vegetation to environmental change. Models are based on well-established descriptions of processes such as vegetation establishment, growth and mortality. However, they are often developed from scratch, which can be inefficient. H...

The hydraulic architecture of plants responds to their water availability, mediating between promoting water flow and providing hydraulic safety against embolism. Sites with a constant supply of water favor plants with large vessel diameters, while in dry conditions, narrower vessels are more advantageous. The characteristics of the vessels are pri...

Antarctic krill, crucial to the Southern Ocean ecosystem and a vital fisheries resource, is endangered by climate change. Identifying drivers of krill biomass is therefore essential for determining catch limits and designating protection zones. We present a modeling approach to pinpointing effects of sea surface temperature, ice cover, chlorophyll...

Background Krill ( Euphausia superba ) and salps ( Salpa thompsoni ) are key macrozooplankton grazers in the Southern Ocean ecosystem. However, due to differing habitat requirements, both species previously exhibited little spatial overlap. With ongoing climate change-induced seawater temperature increase and regional sea ice loss, salps can now ex...

Understanding the vertical migration behaviour of Antarctic krill is important for understanding spatial distribution, ecophysiology, trophic interactions and carbon fluxes of this Southern Ocean key species. In this study, we analysed an eight-month continuous dataset recorded with an ES80 echosounder on board a commercial krill fishing vessel in...

Plants interact locally in many ways and the processes involved (e.g. competition for resources, natural regeneration, mortality or subsequent succession) are complex. These processes give rise to characteristic spatial patterns that vary over time. The corresponding spatial data, that is the locations of individuals and their specific characterist...

Antarctic krill (Euphausia superba) is a key species of the Southern Ocean, impacted by climate change and human exploitation. Understanding how these changes affect the distribution and abundance of krill is crucial for generating projections of change for Southern Ocean ecosystems. Krill growth is an important indicator of habitat suitability and...

Decision-support-system demonstrates several potential applications for restoration management planning, and therefore will be a useful tool to measure and evaluate spatial scale species biodiversity.

Questions Soil resource heterogeneity influences the outcome of plant–plant interactions and, consequently, species co‐existence and diversity patterns. The magnitude and direction of heterogeneity effects vary widely, and the processes underlying such variations are not fully understood. In this study, we explored how and under what resource condi...

In China, the invasion of Spartina alterniflora is an important driver for the decrease of mangrove area and ecological service functions related to this habitat. In the past few decades, S. alterniflora clearing and mangrove restoration projects have mainly focused on the areas where it is already changed but ignored the potential distribution are...

Antarctic krill is a key species of the Southern Ocean, impacted by climate change and human exploitation. Understanding how these changes affect the distribution and abundance of krill is crucial for generating projections of change for Southern Ocean ecosystems. Krill growth is an important indicator of habitat suitability and a series of models...

Low temperature stress is the primary factor determining the latitudinal limits of tropical plants. As the climate warms, tropical species are migrating poleward, displacing native species and modifying ecosystem structure and function. Changes are particularly evident along latitudinal gradients with the highest velocity of change occurring in wet...

Spatiotemporal information on mangrove species assemblage of natural, disturbed, and rehabilitated is an essential prerequisite for effective strategies for biodiversity conservation and management. However, appropriate field‐based sampling strategies of spatial heterogeneity still hamper the detection of the species distribution and its temporal d...

Linked to climate change, drivers such as increased temperatures and decreased water availability affect forest health in complex ways by simultaneously weakening tree vitality and promoting insect pest activity. One major beneficiary of climate-induced changes is the European spruce bark beetle (Ips typographus). To improve the mechanistic underst...

“Blue carbon” wetland vegetation has a limited freshwater requirement. One type, mangroves, utilizes less freshwater during transpiration than adjacent terrestrial ecoregions, equating to only 43% (average) to 57% (potential) of evapotranspiration ( $$ET$$ ET ). Here, we demonstrate that comparative consumptive water use by mangrove vegetation is a...

Agent-based models have been developed and widely employed to assess the impact of disturbances or conservation management on animal habitat use, population development, and viability. However, the direct impacts of canopy disturbance on the arboreal movement of individual primates have been less studied. Such impacts could shed light on the cascad...

The United Nations Decade on Ecosystem restoration (2021¬–2030) lists mangrove ecosystems as a restoration priority. Interest in their conservation has increased recently due to their widespread degradation. Anthropogenic stressors and rehabilitation practices, specifically, have resulted in a significant decline in their species compositions. We i...

Background and Aims Trees interconnected through functional root grafts can exchange resources, but the effect of exchange on trees remains under debate. A mechanistic understanding of resources exchange via functional root grafts will help understand their ecological implications for tree water exchange for individual trees, groups of trees, and f...

Fire is considered a major threat to biodiversity in many habitats and the occurrence of fire has frequently been used to investigate the effectiveness of protected areas. Yet, despite the known importance of tropical peatlands for biodiversity conservation and serious threat that anthropogenically induced fires pose to this ecosystem, the influenc...

Rapid sea level rise (SLR) could overwhelm the adaptive capacity of many mangrove forests. The conservation of functional mangrove ecosystems will rely on their expansion into upper intertidal areas, including salt marshes and salt flats, in advance of SLR. The development of new mangrove habitats could be accelerated by amplifying positive biotic...

Success of forest restoration at farm level depends on the farmer´s decision-making and the constraints to farmers’ actions. There is a gap between the intentions and the actual behavior towards restoration in Sub-Saharan Africa and the Global South. To understand this discrepancy, our study uses empirical household survey data to design and parame...

Ecological and economic systems both comprise of autonomous adaptive agents. It is thus possible that similar mechanisms determine the organization of both these complex systems. Indeed several economic theories have already been successfully applied in an ecological context. Here we show that 'efficient market theory' in economics, where future ea...

Questions Does the presence of salt marsh vegetation affect the long‐term regeneration of the pioneer mangrove species Avicennia germinans in a degraded dwarf forest? Does immobilized coarse woody debris (CWD) affect regeneration similarly? Do larger trees suppress or facilitate intraspecific saplings? Location Dwarf mangrove forest in the high in...

The rapid spread of many weeds into intensely disturbed landscapes is boosted by clonal growth and self-fertilization strategies, which conversely increases the genetic structure of populations. Here, we use empirical and modeling approaches to evaluate the spreading dynamics of Tillandsia recurvata (L.) L. populations, a common epiphytic weed with...

Key message Plant–soil feedbacks in mangrove ecosystems are important for ecosystem resilience and can be investigated by establishing links between empirical and modelling studies. Abstract Plant–soil feedbacks are important as they provide valuable insights into ecosystem dynamics and ecosystems stability and resilience against multiple stressor...

Conceptual models have described mangrove forest structure in response to tidal inundation, porewater salinity and mangrove water use, however, the importance of feedbacks have not been assessed. We assessed the processes underlying the feedback between water availability and plant water use in mangrove ecosystems by applying the process- and indiv...

Individual-based models (IBMs, also known as agent-based models) are mechanistic models in which demographic population trends emerge from processes at the individual level. IBMs are used instead of more aggregated approaches whenever one or more of the following aspects are deemed too relevant to be ignored: intraspecific trait variation, local in...

Sanitation felling is considered as the main measure to protect managed forests from damage due to outbreaks of the European Spruce Bark Beetle. In this study, we investigate the effectiveness of sanitation felling on stopping the spread of a bark beetle population from an un-managed to a managed forest area. For this, we advance an individual-base...

To robustly predict the effects of disturbance and ecosystem changes on species, it is necessary to produce structurally realistic models with high predictive power and flexibility. To ensure that these models reflect the natural conditions necessary for reliable prediction, models must be informed and tested using relevant empirical observations....

The occurrence of natural root grafts, the union of roots of the same or different trees, is common and shared across tree species. However, their significance for forest ecology remains little understood. While early research suggested negative effects of root grafting with the risk of pathogen transmission, recent evidence supports the hypothesis...

Aim of the study: At current, forest management in the Eastern Mediterranean region is largely based on experience rather than on management plans. To support the development of such plans, this study develops and compares site index equations for pure even-aged Pinus brutia stands in Syria using base-age invariant techniques that realistically des...

The acceptance and usefulness of simulation models are often limited by the efficiency, transparency, repro-ducibility, and reliability of the modelling process. We address these issues by suggesting that modellers (1) "trace" the iterative modelling process by keeping a modelling notebook corresponding to the laboratory notebooks used by empirical...

Antarctic krill up- and down-regulate their metabolism as a strategy to cope with the strong seasonal environmental fluctuations in the Southern Ocean. In this study, we investigate the impact of this light- and temperature dependent metabolic regulation on growth, reproduction and winter survival of krill. Therefore, we advance a bioenergetic grow...

Intertidal sedimentary environments are highly dynamic due to frequent sediment redistribution, tidal flooding and wind exposure, yet mangrove plants are able to colonize and shape (sub-) tropical coastlines. Morphological plasticity, the ability of organisms to modify their anatomical traits independent of their genotype in response to environment...

Aim Tree crowns determine light interception, carbon and water exchange. Thus, understanding the factors causing tree crown allometry to vary at the tree and stand level matters greatly for the development of future vegetation modelling and for the calibration of remote sensing products. Nevertheless, we know little about large‐scale variation and...

Aim: Tree crowns determine light interception, carbon and water exchange. Thus, understanding the factors causing tree crown allometry to vary at the tree and stand level matters greatly for the development of future vegetation modelling and for the calibration of remote sensing products. Nevertheless, we know little about large‐scale variation and...

The occurrence of natural root grafts, the functional union of roots of the same or different trees 1–3 , is common and shared across tree species ² . However, their significance for forest ecology remains little understood. While early research suggested negative effects of root grafting (i.e. increases the risk of pathogen transmission) 4,5 , rec...

The increased frequency and spread of tropical peat fires over the last two decades have attracted global attention because they cause significant environmental and health impacts at local to global scales. To understand the relative importance of key factors controlling tropical peatland burning events, we developed PeatFire, an agent-based model...

Deforestation has allowed the massive dispersal and reproduction of some plants that are commonly referred to as weeds. The rapid spread of many weeds into newly disturbed landscapes is often boosted by clonal growth and self-fertilization strategies, which conversely increases the spatial genetic structure (SGS) of populations and reduces the gene...

A key source of genetic variation of microbial populations are plasmids: extrachromosomal genetic elements that replicate autonomously and can be highly mobile between individual cells. Diverse plasmids were found in environmental samples and bacterial populations. Here we explore the mechanisms that help to preserve this gene pool as a fundamental...

It is commonly accepted that vegetation patterns and water supply mutually define each other. In mangroves, soil water salinity and the corresponding osmotic potential are the main drivers of plant water supply. Below-ground processes thus may be key for the structure and dynamics of mangrove stands. Nevertheless, existing simulation models describ...

Mangrove rehabilitation efforts regularly intend to re-establish the former canopy cover quickly by establishing even-aged monocultures. However, there are concerns that these stands are less resilient to disturbances than structurally diverse forests and cannot provide ecosystem services as effectively. The objective of this study was to identify...

Recently, there has been renewed interest in the ecosystem services of mangroves such as carbon sequestration or coastal protection, and consequently, the development of tools providing an effective and automatic monitoring of the dynamics of mangrove land coverage including rehabilitated or naturally regenerated forest stand is increasingly demand...

Trees species in the mangrove genus Avicennia can shed canopy parts when exposed to adverse environmental conditions, such as increases in porewater salinity. The individual-based model BETTINA enables the quantification of the tree's water use depending on its allometric characteristics. It thus provides a tool to model the equilibrium between pla...

The Southern Ocean near the Western Antarctic Peninsula (WAP) is strongly affected by climate change resulting in warmer air temperature, accompanied with reduced sea ice coverage, increased sea water temperature and potential changes in the abundances of two key grazer species Salpa thompsoni (salp) and Euphausia superba (Antarctic krill). While s...

The recent advancement of agent-based modeling is characterized by higher demands on the pa-rameterization, evaluation and documentation of these computationally expensive models. Accordingly, there is also a growing request for "easy to go" applications just mimicking the input-output behavior of such models. Metamodels are being increasingly used...

It is commonly accepted that the processes determining how plant-groundwater interactions influence vegetation patterns depend on subsurface properties, including groundwater availability, but not much is known about the underlying processes. We present a hybrid process-based simulation system to study the feedback between vegetation and subsurface...

Agriculture in the Andes is subject to multiple climate-related risks, typical of complex mountain ecosystems. Most of the strategies used to confront or reduce these risks are based on the adaptive capital of the farm households, such as the availability of labor, extension, and distribution of agricultural land, access to markets, among others. I...

Understanding the structure, basic properties and relationships in a given dataset is a fundamental prerequisite for an appropriate statistical analysis. Here, we highlight the major principles of data exploration and provide a roadmap for a systematic and reproducible analysis based on key questions. Using an exemplary dataset on throughfall measu...

Designing, implementing, and applying agent-based models (ABMs) requires a structured approach, part of which is a comprehensive analysis of the output to input variability in the form of uncertainty and sensitivity analysis (SA). The objective of this paper is to assist in choosing, for a given ABM, the most appropriate methods of SA. We argue tha...

Ensuring ecosystem resilience is an intuitive approach to safeguard the functioning of ecosystems and hence the future provisioning of ecosystem services (ES). However, resilience is a multi‐faceted concept that is difficult to operationalize. Focusing on resilience mechanisms, such as diversity, network architectures or adaptive capacity, has rece...

The Overview, Design concepts and Details (ODD) protocol for describing Individual- and Agent-Based Models (ABMs) is now widely accepted and used to document such models in journal articles. As a standard- ized document for providing a consistent, logical and readable account of the structure and dynamics of ABMs, some research groups also find it...

Interactions in the Marine Benthos - edited by Stephen J. Hawkins August 2019

Along the Upper Gulf of Thailand, coastal fences and breakwaters have been constructed using bamboo since 2005. Despite their potential benefits, bamboo structures disintegrate within seven years releasing floating debris which severely damages mangrove tree stems. The aim of the study was to investigate whether such stem damage resulted in the dec...

Land use transformation at the farm level is attributed to household decision-making, reflected by the behavior and activities of smallholder farmers. Unfortunately, household decision-making in local communities and its determinants are site-specific and hardly understood. This study uses multistage purposive selection of households as a unit for...

Farm household systems (FHSs) in the Andes handle climate-related hazards such as frost and droughts with risk-coping and risk-management strategies based on the adaptive capital available to them. Nevertheless, a higher frequency of climatic stressors observed during the last few decades is challenging their capacity to adapt at a pace fast enough...

Ensuring ecosystem resilience is an intuitive approach to safeguard future provisioning of ecosystem services (ES). However, resilience is an ambiguous concept and difficult to operationalize. Focusing on resilience mechanisms, such as diversity, network architectures or adaptive capacity, has recently been suggested as means to operationalize resi...

Virtually all current major social and environmental challenges such as financial crises, migration, the erosion of democratic institutions, and the loss of biodiversity involve complex systems comprising decision-making, interacting, adaptive agents. To understand how such agent-based complex systems function and respond to change and disturbances...

Understanding the evolutionary forces that maintain antibiotic resistance genes in a population, especially when antibiotics are not used, is an important problem for human health and society. The most common platform for the dissemination of antibiotic resistance genes is conjugative plasmids. Experimental studies showed that mutations located on...

This supplemental material provides a more detailed description of the model system presented in the main article (Zwanzig at al. 2019 https://doi.org/10.1128/MSYSTEMS.00186-18) as well as all supplemental figures S1, S2, S3 and S4. We deployed our model using the R-package shiny and the hosting service 'shinyapps.io', which allows the user to para...

A gradation of the European spruce bark beetle (Ips typographus L.) in managed forests leads to economic losses. Various aspects of the bark beetle management for the reduction of such losses, especially the use of artificial attractants for monitoring or control, are difficult to investigate in the open field. The individual based model IPS (Infes...

Fulltext Share Link (until December 15, 2018): https://authors.elsevier.com/c/1XybY57Eq07Kxc *** Abstract: Forests are under pressure from accelerating global change. To cope with the multiple challenges related to global change but also to further improve forest management we need a better understanding of (1) the linkages between drivers of ecosy...

Fine roots are of major importance for belowground processes in mangrove ecosystems. Little is known about individual mangrove root systems, particularly the fine root component. We measured fine root biomass distribution of solitary standing Rhizophora mangle L. individuals with the dual aim of (a) deepening our understanding of the belowground ec...

Crown displacement in trees is an adaptive response driven by neighbours that optimizes space use and reduces competition. But it can also be the result of wind force. Although morphological responses to neighbours have been well studied, the interplay between neighbours and wind in driving crown shape, and the implications for plant interactions r...

The occurrence of fires has frequently been used to highlight environmental hazards at regional and global scale, and as a proxy for the effectiveness of protected areas. In contrast, the mechanism behind wildfire dynamics in tropical peat land protected areas had been poorly addressed thus far. Our study provides a novel application of assessing f...

Old-growth beech (Fagus sylvatica L.) forests in Europe show a structural heterogeneity, which distinguish from managed ones. Recent investigations revealed that facilitative belowground interactions might counteract aboveground competition for light. However, the exact interaction of these mechanisms is unclear. We developed the BEEchPlasticity (B...

The global effort to rehabilitate and restore destroyed mangrove forests is unable to keep up with the high mangrove deforestation rates, which exceed the average pace of global deforestation. Although facilitation theory presents new possibilities for the restoration of heavily degraded mangrove sites, knowledge of tree–tree interactions in stress...