Tom Lenaerts

Université Libre de Bruxelles | ULB · Department of Informatics

In sequential social dilemmas with stranger matching, initiating cooperation is inherently risky for the first mover. The disclosure of the second mover’s past actions may be necessary to instigate cooperation. We experimentally compare the effect of mandatory and voluntary disclosure with non disclosure in a sequential prisoner's dilemma situation...

Home assistant chat-bots, self-driving cars, drones or automated negotiation systems are some of the several examples of autonomous (artificial) agents that have pervaded our society. These agents enable the automation of multiple tasks, saving time and (human) effort. However, their presence in social settings raises the need for a better understa...

It is widely known how the human ability to cooperate has influenced the thriving of our species. However, as we move towards a hybrid human-machine future, it is still unclear how the introduction of AI agents in our social interactions will affect this cooperative capacity. Within the context of the one-shot collective risk dilemma, where enough...

While many theoretical studies have revealed the strategies that could lead to and maintain cooperation in the Iterated Prisoner’s dilemma, less is known about what human participants actually do in this game and how strategies change when being confronted with anonymous partners in each round. Previous attempts used short experiments, made differe...

Improving the understanding of the oligogenic nature of diseases requires access to high-quality, well-curated Findable, Accessible, Interoperable, Reusable (FAIR) data. Although first steps were taken with the development of the Digenic Diseases Database, leading to novel computational advancements to assist the field, these were also linked with...

While many theoretical studies have revealed the strategies that could lead to and maintain cooperation in the Iterated Prisoner's Dilemma, less is known about what human participants actually do in this game and how strategies change when being confronted with anonymous partners in each round. Previous attempts used short experiments, made differe...

Regulation of advanced technologies such as Artificial Intelligence (AI) has become increasingly important, given the associated risks and apparent ethical issues. With the great benefits promised from being able to first supply such technologies, safety precautions and societal consequences might be ignored or shortchanged in exchange for speeding...

With the introduction of Artificial Intelligence (AI) and related technologies in our daily lives, fear and anxiety about their misuse as well as their inherent biases, incorporated during their creation, have led to a demand for governance and associated regulation. Yet regulating an innovation process that is not well understood may stifle this p...

We examine a social dilemma that arises with the advancement of technologies such as AI, where technologists can choose a safe (SAFE) vs risk-taking (UNSAFE) course of development. SAFE is costlier and takes more time to implement than UNSAFE, allowing UNSAFE strategists to further claim significant benefits from reaching supremacy in a certain tec...

DOME is a set of community-wide recommendations for reporting supervised machine learning–based analyses applied to biological studies. Broad adoption of these recommendations will help improve machine learning assessment and reproducibility.

Quite some real-world problems can be formulated as decision-making problems wherein one must repeatedly make an appropriate choice from a set of alternatives. Expert judgements, whether human or artificial, can help in taking correct decisions, especially when exploration of alternative solutions is costly. As expert opinions might deviate, the pr...

With the introduction of Artificial Intelligence (AI) and related technologies in our daily lives, fear and anxiety about their misuse as well as the hidden biases in their creation have led to a demand for regulation to address such issues. Yet blindly regulating an innovation process that is not well understood, may stifle this process and reduce...

Home assistant chat-bots, self-driving cars, drones or automated negotiations are some of the several examples of autonomous (artificial) agents that have pervaded our society. These agents enable the automation of multiple tasks, saving time and (human) effort. However, their presence in social settings raises the need for a better understanding o...

This paper investigates how the possibility of affecting group composition combined with the possibility of repeated interaction impacts cooperation within groups and surplus distribution. We developed and tested experimentally a Surplus Allocation Game where cooperation of four agents is needed to produce surplus, but only two have the power to al...

From climate action to public health measures, human collective endeavors are often shaped by different uncertainties. Here we introduce a novel population-based learning model wherein a group of individuals facing a collective risk dilemma acquire their strategies over time through reinforcement learning, while handling different sources of uncert...

Human hematopoiesis is surprisingly resilient to disruptions, providing suitable responses to severe bleeding, long lasting immune activation, and even bone marrow transplants. Still, many blood disorders exist which push the system past its natural plasticity, resulting in abnormalities in the circulating blood. While proper treatment of such dise...

The field of Artificial Intelligence (AI) is going through a period of great expectations, introducing a certain level of anxiety in research, business and also policy. This anxiety is further energised by an AI race narrative that makes people believe they might be missing out. Whether real or not, a belief in this narrative may be detrimental as...

The field of Artificial Intelligence (AI) has been introducing a certain level of anxiety in research, business and also policy. Tensions are further heightened by an AI race narrative which makes many stakeholders fear that they might be missing out. Whether real or not, a belief in this narrative may be detrimental as some stakeholders will feel...

Objective The study aimed to identify the genetic basis of partial gonadal dysgenesis (PGD) in a non‐consanguineous family from Estonia. Patients Cousins P (proband) 1 (12 years; 46,XY) and P2 (18 years; 46,XY) presented bilateral cryptorchidism, severe penoscrotal hypospadias, low bitesticular volume and azoospermia in P2. Their distant relative,...

Social dilemmas are often shaped by actions involving uncertain returns only achievable in the future, such as climate action or voluntary vaccination. In this context, uncertainty may produce non-trivial effects. Here, we assess experimentally — through a collective risk dilemma — the effect of timing uncertainty, i.e. how uncertainty about when a...

Rapid technological advancements in Artificial Intelligence (AI), as well as the growing deployment of intelligent technologies in new application domains, have generated serious anxiety and a fear of missing out among different stake-holders, fostering a racing narrative. Whether real or not, the belief in such a race for domain supremacy through...

In collective decision-making (CDM) a group of experts with a shared set of values and a common goal must combine their knowledge to make a collectively optimal decision. Whereas existing research on CDM primarily focuses on making binary decisions, we focus here on CDM applied to solving contextual multi-armed bandit (CMAB) problems, where the goa...

Collective decision-making (CDM) processes – wherein the knowledge of a group of individuals with a common goal must be combined to make optimal decisions – can be formalized within the framework of the deciding with expert advice setting. Traditional approaches to tackle this problem focus on finding appropriate weights for the individuals in the...

The field of Artificial Intelligence (AI) is going through a period of great expectations, introducing a certain level of anxiety in research, business and also policy. This anxiety is further energised by an AI race narrative that makes people believe they might be missing out. Whether real or not, a belief in this narrative may be detrimental as...

Human hematopoiesis is surprisingly resilient to disruptions, providing suitable responses to severe bleeding, long lasting immune activation, and even bone marrow transplants. Still, many blood disorders exist which push the system past its natural plasticity, resulting in abnormalities in the circulating blood. While proper treatment of such dise...

How do people decide which action to take? This question is best answered using Game Theory, which has proposed a series of decision-making mechanisms that people potentially use. In network simulations, wherein games are repeated and pay-off differences can be observed, those mechanisms often rely on imitation of successful behaviour. Surprisingly...

Objective Oesophageal cancer (OEC) is an aggressive disease with a poor survival rate. Prognostic markers are thus urgently needed. Due to the demonstrated prognostic value of histopathological growth pattern (HGP) in other cancers, we performed a retrospective assessment of HGP in patients suffering from invasive OEC. Design A first cohort compos...

Methicillin-resistant Staphylococcus aureus (MRSA) is a difficult-to-treat infection. Increasing efforts have been taken to mitigate the epidemics and to avoid potential outbreaks in low endemic settings. Understanding the population dynamics of MRSA is essential to identify the causal mechanisms driving the epidemics and to generalise conclusions...

Human social dilemmas are often shaped by actions involving uncertain goals and returns that may only be achieved in the future. Climate action, voluntary vaccination and other prospective choices stand as paramount examples of this setting. In this context, as well as in many other social dilemmas, uncertainty may produce non-trivial effects. Wher...

One of the cornerstones in combating the HIV pandemic is the ability to assess the current state and evolution of local HIV epidemics. This remains a complex problem, as many HIV infected individuals remain unaware of their infection status, leading to parts of HIV epidemics being undiagnosed and under-reported. We first present a method to learn e...

This book contains a selection of the best papers of the 31st Benelux Conference on Artificial Intelligence, BNAIC 2019, and 28th Belgian Dutch Machine Learning Conference, BENELEARN 2019, held in Brussels, Belgium in November 2019. The 11 papers presented in this volume were carefully reviewed and selected from 50 regular submissions. They addres...

Primary Microcephaly (PM) is characterized by a small head since birth and is vastly heterogeneous both genetically and phenotypically. While most cases are monogenic, genetic interactions between Aspm and Wdr62 have recently been described in a mouse model of PM. Here, we used two complementary, holistic in vivo approaches: high throughput DNA seq...

One of the cornerstones in combating the HIV pandemic is being able to assess the current state and evolution of local HIV epidemics. This remains a complex problem, as many HIV infected individuals remain unaware of their infection status, leading to parts of HIV epidemics being undiagnosed and under-reported. To that end, we firstly present a met...

The vast amount of DNA sequencing data collected from large patient cohorts have helped in identifying a wide number of disease related mutations relevant for diagnosis and therapy. Although these approaches have greatly improved our understanding of Mendelian cases, many difficulties remain in identifying the causes of a large amount of human gene...

Innovation, creativity, and competition are some of the fundamental underlying forces driving the advances in Artificial Intelligence (AI). This race for technological supremacy creates a complex ecology of choices that may lead to negative consequences, in particular, when ethical and safety procedures are underestimated or even ignored. Here we r...

In order to gain insight into oligogenic disorders, understanding those involving bi-locus variant combinations appears to be key. In prior work, we showed that features at multiple biological scales can already be used to discriminate among two types, i.e. disorders involving true digenic and modifier combinations. The current study expands this m...

A tremendous amount of DNA sequencing data is being produced around the world with the ambition to capture in more detail the mechanisms underlying human diseases. While numerous bioinformatics tools exist that allow the discovery of causal variants in Mendelian diseases, little to no support is provided to do the same for variant combinations, an...

Notwithstanding important advances in the context of single-variant pathogenicity identification, novel breakthroughs in discerning the origins of many rare diseases require methods able to identify more complex genetic models. We present here the Variant Combinations Pathogenicity Predictor (VarCoPP), a machine-learning approach that identifies pa...

A race for technological supremacy in AI could lead to serious negative consequences, especially whenever ethical and safety procedures are underestimated or even ignored, leading potentially to the rejection of AI in general. For all to enjoy the benefits provided by safe, ethical and trustworthy AI systems, it is crucial to incentivise participan...

Notwithstanding important advances in the context of single-variant pathogenicity identification, novel breakthroughs in discerning the origins of many rare diseases require methods able to identify more complex genetic models. We present here the Variant Combinations Pathogenicity Predictor (VarCoPP), a machine-learning approach that identifies pa...

The Iterated Prisoner’s Dilemma (IPD) game is a one of the most popular subjects of study in game theory. Numerous experiments have investigated many properties of this game over the last decades. However, topics related to the simulation scale did not always play a significant role in such experimental work. The main contribution of this paper is...

Next generation sequencing technologies are providing increasing amounts of sequencing data, paving the way for improvements in clinical genetics and precision medicine. The interpretation of the observed genomic variants in the light of their phenotypic effects is thus emerging as a crucial task to solve in order to advance our understanding of ho...

Many real-world decision problems are characterized by multiple objectives which must be balanced based on their relative importance. In the dynamic weights setting this relative importance changes over time, as recognized by Natarajan and Tadepalli (2005) who proposed a tabular Reinforcement Learning algorithm to deal with this problem. However, t...

Paroxysmal nocturnal hemoglobinuria (PNH) is an acquired clonal blood disorder characterized by hemolysis and a high risk of thrombosis, that is due to a deficiency in several cell surface proteins that prevent complement activation. Its origin has been traced to a somatic mutation in the PIG-A gene within hematopoietic stem cells (HSC). However, t...

Supporting methods. (DOCX)

Src Homology 2 and 3 (SH2 and SH3) are two key protein interaction modules involved in regulating the activity of many proteins such as tyrosine kinases and phosphatases by respective recognition of phosphotyrosine and proline-rich regions. In the Src family kinases, the inactive state of the protein is the direct result of the interaction of the S...

A metaheuristic proposed by us recently, Ant Colony Optimization (ACO) hybridized with socio-cognitive inspirations, turned out to generate interesting results when compared to classic ACO. Even though it does not always find better solutions to the considered problems, it usually finds sub-optimal solutions. Moreover, instead of a trial-and-error...

The wide range of applications of the Iterated prisoner's dilemma (IPD) game made it a popular subject of study for the research community. As a consequence, numerous experiments have been conducted by researchers along the last decades. However, topics related with scaling simulation leveraging existing HPC infrastructure in the field of IPD did n...

Background: Tissue-specific integrative omics has the potential to reveal new genic elements important for developmental disorders. Methods: Two pediatric patients with global developmental delay and intellectual disability phenotype underwent array-CGH genetic testing, both showing a partial deletion of the DLG2 gene. From independent human and mu...

To further our understanding of the complexity and genetic heterogeneity of rare diseases, it has become essential to shed light on how combinations of variants in different genes are responsible for a disease phenotype. With the appearance of a resource on digenic diseases, it has become possible to evaluate how digenic combinations differ in term...

Background The advent of next-generation sequencing technologies has opened new avenues for clinical genomics research. In particular, as sequencing costs continue to decrease, an ever-growing number of clinical genomics institutes now rely on DNA sequencing studies at varying scales - genome, exome, mendeliome - for uncovering disease-associated v...

Background Tissue-specific integrative omics has the potential to reveal new genic elements important for developmental disorders. Methods Two pediatric patients with global developmental delay and intellectual disability phenotype underwent array-CGH genetic testing, both showing a partial deletion of the DLG2 gene. From independent human and mur...