Tofazzal Islam

Bangabandhu Sheikh Mujibur Rahman Agricultural University | BSMRU · Institute of Biotechnology and Genetic Engineering

Incidental pesticide application on farmlands can result in contamination of off-target biota, soil, groundwater, and surrounding ecosystems. To manage these pesticide contaminations sustainably, it is important to utilize advanced approaches to pesticide decontamination. This review assesses various innovative strategies applied for remediating pe...

Plants have diverse molecular mechanisms to protect themselves from biotic and abiotic stressors and adapt to changing environments. To uncover the genetic potential of plants, it is crucial to understand how they adapt to adverse conditions by analyzing their genomic data. We analyzed RNA-Seq data from different tomato genotypes, tissue types, and...

The identification of deleterious mutations in different variants of SARS-CoV-2 and their roles in the morbidity of COVID-19 patients has yet to be thoroughly investigated. To unravel the spectrum of mutations and their effects within SARS-CoV-2 genomes, we analyzed 5,724 complete genomes from deceased COVID-19 patients sourced from the GISAID data...

Klebsiella pneumoniae is one of the most important mastitis-causing pathogens. The multidrug-resistant K. pneumoniae strain MNH_G2C5F was isolated from the feces of a cow with clinical mastitis. The MNH_G2C5F strain had a genome size of 5,381,832 bp (85.0× coverage) and typed as sequence type 273 (ST273).

Aroma is a special trait and aspect of the end-use quality of rice and its principal component is 2-acetyl-1-pyrroline (2AP). Sequence variants of betaine aldehyde dehydrogenase (BADH2) gene on rice chromosome 8 are associated with fragrance, and the most prominent mutation is an 8-bp deletion and three single nucleotide polymorphisms (SNPs) in exo...

The gut and flesh microbiome of the national fish of Bangladesh, Tenualosa ilisha , were analyzed using 16S rRNA gene sequencing. Our findings revealed a significant microbial disparity between sample categories and the habitat of hilsa fish, which will serve as a valuable foundation for further comprehensive studies on the hilsa microbiome.

Fish microbiome science is progressing fast, but it is mostly restricted to farmed or laboratory fish species compared to natural or marine fish populations. The aim of this study was to unveil the gut and flesh microbiome signature and diversity of the anadromous fish, Tenualosa ilisha (hilsa), the national fish of Bangladesh. We analysed 18 sampl...

Bangladesh is one of the sugarcane-producing countries in the South Asian region. The present sugar production accounts for approximately 4.5%, and jaggery production accounts for 20.5% of overall consumption. In the 2020–2021 cropping season, the country produced 7.37 million tons of sugarcane in a harvest area of 0.17 million hectares. The averag...

Jackfruit is the world’s largest edible single fruit but short growing periods and cross-pollination restrict the commercialization of the its cultivation. Decoding the genome of a year-round and high-yielding jackfruit variety will lay the foundation for biotechnological improvements and the sustainable commercialization of this highly nutritious...

Contamination of the natural ecosystem by heavy metals, organic pollutants, and hazardous waste severely impacts on health and survival of humans, animals, plants, and microorganisms. Diverse chemical and physical treatments are employed in many countries, however, the acceptance of these treatments are usually poor because of taking longer time, h...

Plants have diverse molecular mechanisms to protect themselves from biotic and abiotic stressors and adapt to changing environments. To uncover the genetic potential of plants, it is crucial to understand how they adapt to adverse conditions by analyzing their genomic data. We analyzed RNA-Seq data from different tomato genotypes, tissue types, and...

Plant probiotic bacteria enhance growth and yield of crop plants when applied at the appropriate time and dose. Two rice probiotic bacteria, Paraburkholderia fungorum strain BRRh-4 and Delftia sp. strain BTL-M2 promote growth and yield of plants. However, no information is available on application of these two bacteria on growth, yield, and diversi...

Recent exciting developments in clustered regularly interspaced short palindromic repeats (CRISPR)-based genome editing showcase its potential to rapidly and efficiently edit genomes in planta, eliminating long processes of tissue culture and extensive breeding for crop improvement. These new methods offer heritable transgene-free edits in one gene...

We sequenced the genomes of Escherichia coli isolates G2M6U and G6M1F, two multidrug-resistant strains that were isolated from mammary tissue and fecal samples, respectively, from mice with induced mastitis. The complete genomes of G2M6U and G6M1F consist of chromosomes of 4.4 Mbp and 4.6 Mbp, respectively.

The entomopathogenic fungus (EPF), Beauveria bassiana, is reported as the most potent biological control agent against a wide range of insect families. This study aimed to isolate and characterize the native B. bassiana from various soil habitats in Bangladesh and to evaluate the bio-efficacy of these isolates against an important vegetable insect...

The Magnaporthe oryzae Triticum (MoT) pathotype is the causal agent of wheat blast, which has caused significant economic losses and threatens wheat production in South America, Asia, and Africa. Three bacterial strains from rice and wheat seeds (B. subtilis BTS-3, B. velezensis BTS-4, and B. velezensis BTLK6A) were used to explore the antifungal e...

Common bean (Phaseolus vulgaris), is a winter legume crop in Bangladesh and is considered an important vegetable with export potential. However, the production of common bean is severely affected by a newly reported soilborne fungal pathogen, Athelia rolfsii. This study aimed to characterize this new pathogen by morphological, molecular, cultural,...

Klebsiella pneumoniae is one of the most common and important mastitis-causing bacteria, and strain MNH_G2C5 was isolated from the milk of a cow suffering from clinical mastitis in a dairy farm of the Gazipur district of Bangladesh. The MNH_G2C5 genome was estimated to be 4,589,728 bp, with 65.5% genome coverage.

Magnaporthe oryzae Triticum (MoT) pathotype is the causal agent of wheat blast, which has caused significant economic losses and threatens wheat production in South America, Asia and Africa. Three bacterial strains from rice and wheat seeds (B. subtilis BTS-3, B. velezensis BTS-4, and B. velezensis BTLK6A) were used to explore the antifungal effect...

The identification of deleterious mutations in different variants of SARS-CoV-2, and their roles in the morbidity of COVID-19 patients are yet to be explored. Analyzing 5,724 complete genomes of SARS-CoV-2, sequenced from deceased COVID-19 patients globally during January 2020 to February 2023, we found that SARS-CoV-2 genomes of the deceased belon...

Wheat, one of the most important food crops, is threatened by a blast disease pandemic. Here, we show that a clonal lineage of the wheat blast fungus recently spread to Asia and Africa following two independent introductions from South America. Through a combination of genome analyses and laboratory experiments, we show that the decade-old blast pa...

Magnaporthe oryzae causes destructive blast disease in more than 50 species of the major cereal crops rice, wheat and maize and destroys food of millions of people worldwide. Application of synthetic chemical fungicides are environmentally hazardous and unreliable in controlling M. oryzae. Conversely, naturally occurring biofungicides with multiple...

Scientists are finding the most effective chemotherapeutic agents for the treatment of cancer. In the present study, we evaluated the anticancer mechanism of DPPG, a derivative of DAPG (2,4-diacetylphloroglucinol), for the first time. DPPG and DAPG inhibited 83 and 59% of human colorectal cancer HCT116 cell growth at 40.0 µg/ml, and 74 and 57% of h...

The application of plant probiotic bacteria for a sustainable environment-friendly agriculture system has created new avenues with integration of modern technology and eco-friendly management approaches. With a goal of using minimum chemical fertilizer and getting sustainable yield in cereal grains, especially of the rice crop, biological alternati...

Maize is a major consumable cereal crop and a resource of a range of economic products worldwide. Approximately, 55%, 20%, and 12% of maize are utilized for feed, nonfood products, and food purposes, respectively. Consumption of maize is expected to increase in many Asian and African countries, where yield is estimated to be double by 2030. Biotech...

Black root rot complex and crown rot of strawberry caused by soilborne fungi limit sustainable strawberry production in the northeastern United States, especially in perennial systems, including matted row and plasticulture. As pathogen populations build up over time in the rhizosphere and infect the root system, feeder roots are pruned, which dimi...

Magnaporthe oryzae pathotype Triticum (MoT) is a devastating fungal phytopathogen causing wheat blast disease which threatens wheat production particularly in warmer climate zones. Effective disease control is hampered by the limited knowledge on the life cycle, epidemiology, and pathogenicity of MoT. Since MoT mainly infects and colonizes the infl...

The recent discovery of the horizontal transfer of a toxin-neutralizing gene from plant to whitefly (Bemisia tabaci), a polyphagous insect, sparked a new area of study. In this forum, we discuss some potential biotechnological applications of this newly discovered knowledge in the coevolutionary arms race between plants and whitefly.

Enterococcus faecalis is associated with streptococcosis like infection in fish. A whole-genome sequence study was conducted to investigate the virulence factor and antibiotic-resistance genes in three fish pathogenic E. faecalis. Genomic DNA was extracted from three strains of E. faecalis isolated from streptococcosis infected Nile tilapia (strain...

We previously reported that SARS-CoV-2 infection reduces human nasopharyngeal commensal microbiomes (bacteria, archaea and commensal respiratory viruses) with inclusion of pathobionts. This study aimed to assess the possible changes in the abundance and diversity of resident mycobiome in the nasopharyngeal tract (NT) of humans due to SARS-CoV-2 inf...

Drought, salinity, waterlogging, and extreme temperatures are major abiotic stresses that impact on the growth and yield of crop plants, including wheat. These stresses pose significant negative impacts on the photosynthetic process as well as other physiological and biochemical functions, which ultimately decrease wheat yield. This book chapter ai...

The circadian clock is a timekeeper that may govern biological processes throughout a 24-h period. The clock’s ability to temporally gate reactions to environmental stimuli is enhanced when the internal circadian time is properly synchronized with the environment. Circadian gating outlines an effective technique to boost stress resistance without s...

After rice, wheat is the oldest and most significant cereal crop. Wheat consumption has increased dramatically over the world, while output has decreased due to abiotic stressors such as drought, temperature (high/low), salt, and other factors. Abiotic stressors are significant factors that produce a number of changes in plant metabolism, according...

On July 23, 2022 the World Health Organization (WHO) has announced the Monkeypox disease (MPXD) as a worldwide public health issue. This study conducts a systematic review and meta-analysis to determine the overall case fatality rate (CFR) of MPXD worldwide during 1970-2022. The tenuretracked MPXD outbreaks associated with CFR were calculated based...

Jackfruit ( Artocarpus heterophyllus Lam.) is the national fruit of Bangladesh and produces fruit in the summer season only. However, jackfruit is not commercially grown in Bangladesh because of an extremely high variation in fruit quality, short seasonal fruiting (June-August) and susceptibility to abiotic stresses. Conversely, a year-round high y...

Colorectal cancer is the third most life-threatening cancer in the western countries. For the treatment, several chemotherapeutic drugs are using those that have severe side effects on the patient. So, finding alternative drugs is important. In the present research antimycin A was selected to evaluate the anticancer properties on the HCT-116 colore...

Food security for the growing world population can be affected by many different socio-economic and food production variables including pest outbreaks. Plant disease epidemics historically played a significant role in the starvation and displacement of the world population. Despite huge progress made by researchers in managing diseases of staple co...

Global crop yield and food security are being threatened by phytophagous insects. Innovative methods are required to increase agricultural output while reducing reliance on hazardous synthetic insecticides. Using the revolutionary CRISPR-Cas technology to develop insect-resistant plants appears to be highly efficient at lowering production costs an...

Global crop yield and food security are being threatened by phytophagous insects. Innovative methods are required to increase agricultural output while reducing reliance on hazardous synthetic insecticides. Using the revolutionary CRISPR-Cas technology to develop insect-resistant plants appears to be highly efficient at lowering production costs an...

Citation: Moon, T.T.; Maliha, I.J.; Khan, A.A.M.; Chakraborty, M.; Uddin, M.S.; Amin, M.R.; Islam, T.

Streptococcosis is one of the major threats to Nile tilapia (Oreochromis niloticus) in most regions of the world. Recently, Enterococcus faecalis has been widely reported to be involved in streptococcosis in O. niloticus in Asia and Africa. This study aimed to isolate beneficial marine bacteria to evaluate their effects on growth, hematological par...

Magnaporthe oryzae is one of the most notorious fungal pathogens that causes blast disease in cereals, and results in enormous loss of grain production. Many chemical fungicides are being used to control the pathogen but none of them are fully effective in controlling blast disease. Therefore, there is a demand for the discovery of a new natural bi...

Plant diseases are among the major factors affecting plant productivity. Biological control of plant diseases is preferred over chemical control as it is environment-friendly, cost-effective, and sustainable. Among many microbes capable of providing biological control of plant diseases, probiotic Bacillus species are most promising as they can surv...

The presence of highly poisonous arsenic (As) elements in food concerns humans and animals. In Bangladesh, arsenic-contaminated groundwater is frequently utilized for agricultural irrigation. This is a significant source of arsenic pollution in the human food chain. For the first time, we investigated the presence of total arsenic in various foodst...

Salinity is abiotic stress, which causes adverse environmental conditions for rice cultivation. In particular, local aromatic rice cultivation is heavily influenced by soil salinity stress, which has an impact on global food security. This study aimed to screen local aromatic rice genotypes in a hydroponics experiment using Yoshida solutions to eva...

Fungal infection causes a significant reduction in both quality and yield in different crop plants. Invasive fungal species cause serious community and health care-acquired infections worldwide. It is essential to precisely detect and identify the pathogenic fungi in the seeds and/or at an early stage of plant growth to reduce the yield losses of c...

The emergence of environmental contaminants (ECs) either from natural or anthropogenic sources is considered a critical threat to the various components of the ecosystems. Therefore eco-friendly, innovative, and practical approaches for the remediation of ECs are needed toward sustainable environmental pollution management. Among the innovative tec...

Innovative farming practices in the traditional agriculture have significantly been progressed in last 1,000 years. Most of these aboriginal agricultural methodologies were not finely honed. Concurrent improvement of biochemistry and engineering, farming practices were also rapidly improved during the early forty years of the twentieth century. Aft...

We investigated the role of two different plant growth-promoting probiotic bacteria in conferring cadmium (Cd) tolerance in rapeseed (Brassica campestris cv. BARI Sarisha-14) through improving reactive oxygen species scavenging, antioxidant defense, and glyoxalase system. Soil, as well as seeds of rapeseed, were separately treated with probiotic ba...

Sugarcane is an economically important crop plant under the family of Poaceae. It provides approximately 80% of sugar required for human consumption in the world. It is also used as a raw substance for bioethanol production that is a renewable energy source alternative to hazardous fossil fuels. However, various biotic stresses caused by insects, a...

Multiple bacteria under Streptococcus, Enterococcus and Lactococcus genera are considered to be associated with Streptococcosis. This study was conducted to develop and evaluate the effectiveness of whole cell formalin killed vaccine prepared from E. faecalis, E. hirae and E. faecium against the streptococcosis in Nile tilapia. To develop the candi...

Summary Efficient pathogen diagnostics and genotyping methods enable effective disease management and breeding, improve crop productivity and ensure food security. However, current germplasm selection and pathogen detection techniques are laborious, time‐consuming, expensive, and not easy to mass‐scale application in the field. Here, we optimized a...

The coupling of clustered regularly interspaced short palindromic repeats (CRISPR)-Cas RNA-programmable nucleases with nucleic acid detection platforms has brought radical changes to the field of disease diagnosis. Recently, Sánchez et al. developed a simple, rapid, highly sensitive, precise, and in-field deployable point-of-care (POC) and point-of...

Selenium (Se) is a metalloid mineral micronutrient required for the healthy survival of humans, animals, archaea, and a few microorganisms. Its importance for plants is still being investigated. Presently, the agriculture sector is facing several challenges including a wide range of environmental stresses such as salinity, drought, extreme heat and...