Timothy D Weaver

University of California, Davis | UCD · Department of Anthropology

It is a well-known limitation in current human genetics research that non-European diversity is under-represented in biobanks which then limits the investigation of genetic architecture for complex traits. This issue is further compounded by the practice of excluding “admixed” participants or individuals who identify with an ethnic label that is am...

Despite broad agreement that Homo sapiens originated in Africa, considerable uncertainty surrounds specific models of divergence and migration across the continent¹. Progress is hampered by a shortage of fossil and genomic data, as well as variability in previous estimates of divergence times¹. Here we seek to discriminate among such models by cons...

Objectives: Collecting skeletal measurements from medical imaging databases remains a tedious task, limiting the research utility of biobank-level data. Here we present an automated phenotyping pipeline for obtaining skeletal measurements from DXA scans and compare its performance to manually collected measurements. Materials and methods: A pipe...

Objectives: When reconstructing fossil pelves, the articulation of the pelvic bones largely relies on subjective decisions by researchers. Different positionings at the pubic symphysis can affect the overall morphology of the pelvis and the subsequent biological interpretation associated with that individual or species. This study aims to reduce t...

Objectives: Collecting skeletal measurements from medical imaging databases remains a tedious task, limiting the research utility of biobank-level data. Here we present an automated phenotyping pipeline for obtaining skeletal measurements from DXA scans and compare its performance to manually collected measurements. Materials and Methods: A pipel...

Objectives The global distribution of human body proportions has long been attributed to thermoregulatory adaptation to climate. However, latitude has been the most common proxy for climate across ecogeographic studies. If thermoregulation was driving post‐cranial evolution, temperature should provide a better explanation for the morphological patt...

While it is now broadly accepted that Homo sapiens originated within Africa, considerable uncertainty surrounds specific models of divergence and migration across the continent. Progress is hampered by a paucity of fossil and genomic data, as well as variability in prior divergence time estimates. Here we use linkage disequilibrium and diversity-ba...

Many disciplines have benefited greatly from the recent rise of big data and computational power. However, our ability to extract skeletal phenotypes is typically limited to how efficiently a researcher can manually place landmarks or extract outline data. For large medical imaging databases manual extraction of anatomical data is not feasible beca...

Ancient DNA analyses have shown that interbreeding between hominin taxa occurred multiple times. Although admixture is often reflected in skeletal phenotype, the relationship between the two remains poorly understood, hampering interpretation of the hominin fossil record. Direct study of this relationship is often impossible due to the paucity of h...

Questions surrounding the timing, extent, and evolutionary consequences of archaic admixture into human populations have a long history in evolutionary anthropology. More recently, advances in human genetics, particularly in the field of ancient DNA, have shed new light on the question of whether or not Homo sapiens interbred with other hominin gro...

The paucity of well-preserved pelvises in the hominin fossil record has hindered robust analyses of shifts in critical biological processes throughout human evolution. The Kebara 2 pelvis remains one of the best preserved hominin pelvises, providing a rare opportunity to assess Neanderthal pelvic morphology and function. Here, we present two new re...

Objective: Distal femoral metaphyseal surface morphology is highly variable in extant mammals. This variation has previously been linked to differences in locomotor behavior. We perform the first systematic survey and description of the development of this morphology in extant hominoids. Materials and methods: We collected 3D surface laser scans...

Accumulating genomic, fossil and archaeological data from Africa have led to a renewed interest in models of modern human origins. However, such discussions are often discipline-specific, with limited integration of evidence across the different fields. Further, geneticists typically require explicit specification of parameters to test competing de...

The general adherence of modern human body proportions to ecogeographic rules is frequently argued to be the result of thermoregulatory adaptation to climate. However, much of the history of human migrations follows the same clines that are associated with trends in body form. It is therefore important to test hypotheses about human adaptation to c...

Researchers studying extant and extinct taxa are often interested in identifying the evolutionary processes that have lead to the morphological differences among the taxa. Ideally, one could distinguish the influences of neutral evolutionary processes (genetic drift, mutation) from natural selection, and in situations for which selection is implica...

Significance Agriculture changed not only human culture and lifeways, but human biology as well. Previous studies indicate that softer agricultural diets may have resulted in a less robust craniofacial morphology in early farmers. However, obtaining reliable estimates of worldwide subsistence effects has proved challenging. Here, we quantify change...

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African and Western Asian contemporaries of Neanderthals , generally considered to be the earliest Homo sapiens , are not particularly ‘modern’ looking in their cranial anatomy. Here we test whether the dental morphological signal agrees with this assessment. We used a Bayesian statistical approach to classifying individuals into ‘modern’ and ‘non-...

Comparisons of to can provide insights into the evolutionary processes that lead to differentiation, or lack thereof, among the phenotypes of different groups (e.g., populations, species), and these comparisons have been performed on a variety of taxa, including humans. Here, I show that for neutrally evolving (i.e., by genetic drift, mutation, and...

Significance One of the oldest questions in human evolutionary studies is: why do Neandertals look different from present-day and ancient modern humans? This question can be addressed at different levels, but a critical component of a complete answer is understanding the developmental basis of adult differences. We now know that many skull differen...

The beauty of shape analysis is its potential to both quantify and concretely represent morphological variation. Preserving this potential in evolutionary studies that require population structure to be disentangled from possible sources of selection has proven challenging. Very often, shape variation and the predictors of interest are reduced to s...

Neandertal specimens with severe antemortem (before death) tooth loss (AMTL) are sometimes interpreted as evidence for human-like behaviors in Neandertals, such as conspecific care or cooking, although it is uncertain whether AMTL frequencies in Neandertals are similar to those in modern humans and exceed those in non-human primates. This study cha...

Objectives: We expand upon a multivariate mixed model from quantitative genetics in order to estimate the magnitude of climate effects in a global sample of recent human crania. In humans, genetic distances are correlated with distances based on cranial form, suggesting that population structure influences both genetic and quantitative trait varia...

A variety of lines of evidence support the idea that neutral evolutionary processes (genetic drift, mutation) have been important in generating cranial differences between Neandertals and modern humans. But how do Neandertals and modern humans compare with other species? And how do these comparisons illuminate the evolutionary processes underlying...

There has been much debate about why humans throughout the world differ in facial form. Previous studies of human skull morphology found levels of among-population differentiation that were comparable to those of neutral genetic markers, suggesting that genetic drift (neutral processes) played an important role in influencing facial differentiation...

Estimates of the amount of genetic differentiation in humans among major geographic regions (e.g., Eastern Asia vs. Europe) from quantitative-genetic analyses of cranial measurements closely match those from classical- and molecular-genetic markers. Typically, among-region differences account for ∼10% of the total variation. This correspondence is...

In the 1980s, genetic and fossil evidence began to call attention to Africa’s preeminence in the origins of modern human populations (1), but this evidence could be interpreted in two fundamentally different ways (2). Was Africa’s role greater than other continents because it always harbored a larger human population (size) or because modern humans...

Teeth are the basis for the best methods for estimating the age-at-death of archaeological and paleontological faunal remains, because they change by eruption and wear throughout an individual's life and because they preserve well. However, age-at-death can be difficult to estimate when teeth are isolated or when no known-age reference sample is av...

Rates of phenotypic evolution have been a persistent interest of paleontologists (e.g., Eldredge and Gould 1972; Gingerich 1983; Hunt 2007; Stanley 1985), because of their potential to illuminate the mechanisms that generate or constrain phenotypic diversification within and between evolutionary lineages over long time scales. Field or laboratory s...

Infracranial sequences of maturation are commonly used to estimate the age at death of nonadult specimens found in archaeological, paleoanthropological, or forensic contexts. Typically, an age assessment is made by comparing the degree of long-bone epiphyseal fusion in the target specimen to the age ranges for different stages of fusion in a refere...

A procedure is outlined for distinguishing among competing hypotheses for fossil morphology and then used to evaluate current views on the meaning of Neandertal skeletal morphology. Three explanations have dominated debates about the meaning of Neandertal cranial features: climatic adaptation, anterior dental loading, and genetic drift. Neither cli...

The Aurignacian is typically taken as a marker of the spread of anatomically modern humans into Europe. However, human remains associated with this industry are frustratingly sparse and often limited to teeth. Some have suggested that Neandertals may, in fact, be responsible for the Aurignacian and the earliest Upper Paleolithic industries. Althoug...

Childbirth is complicated in humans relative to other primates. Unlike the situation in great apes, human neonates are about the same size as the birth canal, making passage difficult. The birth mechanism (the series of rotations that the neonate must undergo to successfully negotiate its mother's birth canal) distinguishes humans not only from gre...

A human partial maxillary dentition and a fragmentary cranium were recovered from Obi-Rakhmat Grotto in northeastern Uzbekistan in 2003. Initial descriptions of this single juvenile (OR-1) from a Middle Paleolithic archaeological context have emphasized its mosaic morphological pattern; the dentition appears archaic, while certain morphological asp...

Recent research has shown that genetic drift may have produced many cranial differences between Neandertals and modern humans. If this is the case, then it should be possible to estimate population genetic parameters from Neandertal and modern human cranial measurements in a manner analogous to how estimates are made from DNA sequences. Building on...

The genetic evidence for modern human origins was reviewed recently in Evolutionary Anthropology by Pearson,1 so our goal is to highlight new developments rather than attempt a comprehensive review. For years, polarized Multiregional and Out-of-Africa models for modern human origins were debated vigorously, but today there is substantial agreement...

Evolutionary investigations of human crania typically take a limited view of cranial diversity as they discount the possibility that human cranial variation could simply be due to the effects of random genetic drift, gene flow and mutation in favor of natural selection and developmental changes. Natural selection alone cannot explain similarities b...

Age at death of a single skeletal individual or a group is essential information in archaeological, paleoanthropological, and forensic contexts. Dental remains are the most commonly used age indicators, but when the dentition is not available, or too few teeth are present for an accurate age assessment, other age indicators such as skeletal maturat...

Numerous studies have discussed the influence of thermoregulation on hominin body shape concluding, in accordance with Allen's rule, that the presence of relatively short limbs on both extant as well as extinct hominin populations offers an advantage for survival in cold climates by reducing the limb's surface area to volume ratio. Moreover, it has...

Previous studies have differed in expectations about whether long limbs should increase or decrease the energetic cost of locomotion. It has recently been shown that relatively longer lower limbs (relative to body mass) reduce the energetic cost of human walking. Here we report on whether a relationship exists between limb length and cost of human...

Most evolutionary explanations for cranial differences between Neandertals and modern humans emphasize adaptation by natural selection. Features of the crania of Neandertals could be adaptations to the glacial climate of Pleistocene Europe or to the high mechanical strains produced by habitually using the front teeth as tools, while those of modern...

The usefulness of cranial morphology in reconstructing the phylogeny of closely related taxa is often questioned due to the possibility of convergence or parallelism and epigenetic response to the environment. However, it has been suggested that different cranial regions preserve phylogenetic information differentially. Some parts of the face and n...

Cranial morphology is widely used to reconstruct evolutionary relationships, but its reliability in reflecting phylogeny and population history has been questioned. Some cranial regions, particularly the face and neurocranium, are believed to be influenced by the environment and prone to convergence. Others, such as the temporal bone, are thought t...

The Froude number has been widely used in anthropology to adjust for size differences when comparing gait parameters or other nonmorphological locomotor variables (such as optimal walking speed or speed at gait transitions) among humans, nonhuman primates, and fossil hominins. However, the dynamic similarity hypothesis, which is the theoretical bas...

Extensive research in human genetics on presumably neutral loci has shown that the overwhelming majority of human diversity is found among individuals within local populations. Previous apportionments of craniometric diversity are similar to these genetic apportionments, implying that interregionally differing selection pressures have played a limi...

Neandertal femora are distinct from contemporaneous near-modern human femora. Traditionally, these contrasts in femoral shape have been explained as the result of the elevated activity levels and limited cultural abilities of Neandertals. More recently, however, researchers have realized that many of these femoral differences may be explained by th...

Plotting the percentages of juvenile, prime, and old individuals on a triangular graph has become a popular method for analysing mortality profiles or age structures found in archaeological faunal samples. This method allows easy comparisons of multiple samples or multiple species and appears to work even with small sample sizes. However, the utili...

MacMolecular displays small- to medium-sized biomolecules, with particular emphasis on peptides. It has been developed to run on color Macintosh computers. The display can be stick, ball and stick, depth cued by thickness stick, or several types of space-filling representations. The program takes input from standard PDB files, simple Cartesian coor...