Timothy Bonebrake

The University of Hong Kong | HKU · School of Biological Sciences

Roughly 90% of butterfly species live in the tropics. Despite this, we know very little about tropical butterfly ecology particularly when compared to temperate butterfly systems. The relative scarcity of data on tropical butterfly populations hampers our ability to effectively conserve them. In this review we summarize recurring themes from ecolog...

ContextEnvironmental processes and dispersal are primary determinants of metacommunity dynamics. The relative importance of these effects may vary between species of different abundance classes, given variation in life history traits. Under high disturbance conditions, rare species may be more easily eliminated from their optimal habitats and their...

Difficulty in characterizing the relationship between climatic variability and climate change vulnerability arises when we consider the multiple scales at which this variation occurs, be it temporal (from minute to annual) or spatial (from centimetres to kilometres). We studied populations of a single widely distributed butterfly species, Chlosyne...

Background Early in the coronavirus disease 2019 (COVID-19) pandemic, Sunda pangolins (Manis javanica) involved in the illegal wildlife trade in mainland China were identified as hosts of severe acute respiratory syndrome-related coronaviruses (SARSr-CoVs). Although it is unconfirmed whether pangolins or other traded wildlife served as intermediate...

Circadian rhythms are highly conserved across the tree of life, with light serving as the primary cue for the circadian timer. Photoperiod variation follows a latitudinal gradient, reflecting fluctuations in seasonality that increases towards the poles. As photoperiod variability intensifies at higher latitudes, organisms must develop mechanisms to...

The conservation status of invertebrates globally is uncertain1–5. In particular, information from primary tropical forests is limited3–5, and yet invertebrates are responsible for crucial processes in the ecosystem6,7 as well as being an essential food source for many vertebrates. There is currently significant debate as to whether invertebrate bi...

Insects are posited to be declining globally. This is particularly pertinent in tropical forests, which exhibit both the highest levels of biodiversity and the highest rates of biodiversity loss. However, for the hyper-diverse tropical insects there are scant data available to evidence declines. Understanding tropical insect diversity and its respo...

Urban ecology and tropical biology have both developed rapidly in recent decades and matured into important interdisciplinary fields, with significant implications for biodiversity and human communities globally. However, urban ecosystems within the tropics remain understudied and poorly characterized despite these systems representing major hotspo...

Insect biogeography is poorly documented globally, particularly in the tropics. Recent intensive research in tropical Asia, combined with increasingly available records from citizen science, provides an opportunity to map the distributions of tropical Asian butterflies. We compiled a dataset of 724,247 occurrences of 3,591 tropical Asian butterfly...

Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions1,2. To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sam...

Species redistribution through climate change remains a global problem. However, factors such as habitat availability can complicate the attribution of species distribution shifts. We used habitat metrics derived from repeated airborne LiDAR surveys in 2010 to 2020 to examine the underlying causes for the establishment of new butterfly species in H...

Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we...

Widespread species experience a variety of climates across their distribution, which can structure their thermal tolerance, and ultimately, responses to climate change. For ectotherms, activity is highly dependent on temperature, its variability and availability of favourable microclimates. Thermal exposure and tolerance may be structured by the av...

Urbanization and land cover change are significantly affecting the availability of habitats for wildlife worldwide. However, linking species persistence to large-scale habitat changes is challenging, especially when wildlife monitoring data is lacking. In China, the Eurasian otter ( Lutra lutra ) is a species of conservation concern and is listed a...

Traditional Chinese Medicine (TCM) utilizes animal products derived from hundreds of species. For some species, such as the pangolins (family Manidae), demand from the medicinal trade has been recognized as a major threat and is under strict regulations to conserve declining endangered populations. In parallel, species such as the tokay gecko (Gekk...

Urbanization and land cover change are significantly affecting the availability of habitats for wildlife worldwide. However, linking species persistence to large-scale habitat changes is challenging, especially when wildlife monitoring data is lacking. In China, the Eurasian otter (Lutra lutra) is a species of conservation concern and is listed as...

The white-bellied pangolin ( Phataginus tricuspis ) is the world’s most trafficked mammal and is at risk of extinction. Reducing the illegal wildlife trade requires an understanding of its origins. Using a genomic approach for tracing confiscations and analyzing 111 samples collected from known geographic localities in Africa and 643 seized scales...

Identifying the drivers that promote unique species compositions (i.e. ecological uniqueness) is crucial to understanding the mechanisms underpinning diversity patterns and for effective conservation planning. Environmental conditions are often sampled differentially in datasets, which can lead to rarer environments having unique species compositio...

Aim The capacity for poleward range expansions beyond the tropics in corals hinges on ecophysiological constraints and resulting responses to climatic variability. We aimed to determine how future warming will affect coral habitat suitability at the poleward range edges of these foundational species in the Northwest Pacific. Location Northwest Pac...

Aim Ecological theory has predicted that species richness should stabilize communities, with mechanisms including species synchrony and population variability determining the net impacts. While these theories have been supported empirically, results can be sensitive to taxonomic bias as studies are often focussed on plants. Trophic differences betw...

Habitat-specific thermal responses are well documented in various organisms and likely determine the vulnerability of populations to climate change. However, the underlying roles of genetics and plasticity that shape such habitat-specific patterns are rarely investigated together. Here we examined the thermal plasticity of the butterfly Bicyclus do...

Research on the ecology and conservation of Lepidoptera (and other species) has historically neglected tropical diversity – but the Lepidoptera of tropical Africa have been particularly understudied. Central Africa represents a major centre of biodiversity for butterflies, moths and other taxa but major threats including habitat loss, habitat degra...

Climatic gradients such as latitude and elevation are considered primary drivers of global biogeography. Yet, alongside these macro‐gradients, the vertical space and structure generated by terrestrial plants form comparable climatic gradients but at a fraction of the distance. These vertical gradients provide a spectrum of ecological space for spec...

In temperate forests, leaf phenology is a sensitive indicator of climate change and a major regulator of seasonal carbon and water cycling. Many studies have documented large intra-site leaf phenology variability across individual trees but conventional approaches for monitoring individual tree-scale leaf phenology are often limited to a small spat...

To what degree plant ecosystems thermoregulate their canopy temperature (Tc) is critical to assess ecosystems' metabolisms and resilience with climate change, but remains controversial, with opinions from no to moderate thermoregulation capability. With global datasets of Tc, air temperature (Ta), and other environmental and biotic variables from F...

Lack of data on population sizes and resource requirements are major impediments to the effective conservation of rare species globally. The conservation of the Eurasian otter (Lutra lutra) in Hong Kong reflects many of these key challenges for elusive and difficult‐to‐study mammals. It is a rare carnivore that has narrowly escaped extirpation, now...

Disturbances such as tropical cyclones and insect pests in mangroves can cause defoliation, tree mortality, and other changes in ecosystem processes. Understanding the resistance and resilience of mangroves to disturbance is critical to developing strategies for conservation. However, most studies apply multi-temporal optical data which have limite...

Perceptions of, and attitudes toward, wildlife are influenced by exposure to, and direct experiences with, nature. Butterflies are a conspicuous and ubiquitous component of urban nature across megacities that are highly urbanized with little opportunity for human–nature interactions. We evaluated public familiarity with, perceptions of and attitude...

The pet trade and Traditional Chinese Medicine (TCM) consumption are major drivers of global biodiversity loss. Tokay geckos (Gekko gecko)are among the most traded reptile species worldwide. In Hong Kong, pet and TCM markets sell tokay geckos while wild populations also persist. To clarify connections between trade sources and destinations, we comp...

Climate change impacts bird migration phenology, causing changes in departure and arrival dates, leading to potential mismatches between migration and other key seasonal constraints. While the impacts of climate change on arrival at breeding grounds have been relatively well documented, little is known about the impacts of climate change on post-br...

Heat tolerance is a key trait for understanding insect responses to extreme heat events, but tolerance may be modulated by changes in food availability and seasonal variability in temperature. Differences in sensitivity and resistance across life stages are also important determinants of species responses. Using a full-factorial experimental design...

Snake soup continues to be an iconic tradition in Cantonese culture. Yet little is known about the relationship between snake soup consumption in Hong Kong, wild snake populations, and the communities depending on this tradition for their livelihoods. We applied an interdisciplinary approach including interviews with shopkeepers and genetic analyse...

While essential in understanding impacts of climate change for organisms, diel variation remains an understudied component of temporal variation in thermal tolerance limits [i.e. the critical thermal minimum (CTmin) and maximum (CTmax)]. For example, a higher Ctmax might be expected for an individual if the measurement is taken during the day (when...

Pangolins have recently received significant media attention globally as the trade for their scales and meat is driving many species closer to extinction. As a result of this, there have been increased legal regulations placed on pangolin trade in recent years. The suggestion that pangolins may have been involved in the transmission of COVID-19 fur...

Snakebite envenomation continues to contribute to high fatality and morbidity rates across Asia. Yet snake bite is one of many outcomes due to human-snake conflicts, which themselves are only one type of human-snake relationship among the diversity of such interactions. We propose that human-snake relationships need to be explored from a perspectiv...

The thermal biology of ectotherms largely determines their abundance and distributions. In general, tropical species inhabiting warm and stable thermal environments tend to have low tolerance to cold and variable environments, which may restrict their expansion into temperate climates. However, the distribution of some tropical species does extend...

Zoonotic spillovers are predicted to become more frequent as humans become increasingly exposed to novel pathogens through the juggernaut of natural habitat destruction and increased interfaces with wildlife, and as the global commerce in wildlife continues to increase. Ending, or at least minimising, highest risk activities informed through a One...

Decades of warnings that the trade and consumption of wildlife could result in serious zoonotic pandemics have gone largely unheeded. Now the world is ravaged by COVID-19, with tremendous loss of life, economic and societal disruption, and dire predictions of more destructive and frequent pandemics. There are now calls to tightly regulate and even...

Diversity metrics, essential for habitat evaluation in conservation, are often based on occurrences records with little consideration of behavioral ecology. As species use diverse habitats to perform different behaviors, reliance on occurrence records alone will fail to reveal environmental conditions shaping the behavioral importance of habitats w...

The wildlife trade is a major cause of species loss and a pathway for disease transmission. Socioeconomic drivers of the wildlife trade are influential at the local scale yet rarely accounted for in multinational agreements aimed at curtailing international trade in threatened species. In recent decades (1998-2018), approximately 421,000,000 threat...

Thermal adaptation to habitat variability can determine species vulnerability to environmental change. For example, physiological tolerance to naturally low thermal variation in tropical forests species may alter their vulnerability to climate change impacts, compared with open habitat species. However, the extent to which habitat-specific differen...

• Ecological studies conducted on lucanids in Asia are limited, resulting in considerable knowledge gaps in the fundamental ecology of these charismatic species (e.g. larval substrate associations), despite their potential importance in wood decomposition. • We conducted 25 transect surveys in secondary forest sites in Hong Kong and sampled wood pa...

Nature has the potential to provide wide-ranging economic contributions to society – from ecosystem services to providing income to communities via fair trade of resources. Unsustainable trade in wildlife, however, threatens biodiversity and its ability to support communities and a functioning planet. It is therefore important to have clear systems...

In ectothermic predator‐prey relationships, evasion of predation by prey depends on physiological and behavioural responses relating to the thermal biology of both predator and prey. On Japan's Izu Islands, we investigated a prey lizard's physiological and thermal responses to the presence of a snake predator over geologic time in addition to recen...

Exploitation of species for wildlife trade, including the demand for exotic pets (likely sourced from the wild or recent generations of captivity) is a major threat to biodiversity. Although not traditionally considered "pet keeping" countries, pet ownership is growing in Asia. Exotic animals are also appearing in cafes, which are growing in popula...

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Direct observations of marine ecosystems are inherently limited in their temporal scope. Yet, ongoing global anthropogenic change urgently requires improved understanding of long-term baselines, greater insight into the relationship between climate and biodiversity, and knowledge of the evolutionary consequences of our actions. Sediment cores can p...

Diets of species are crucial in determining how they influence food webs and community structures, and how their populations are regulated by different bottom‐up processes. Omnivores are able to adjust their diet flexibly according to environmental conditions, such that their impacts on food webs and communities, and the macronutrients constraining...

Significance We discovered that the tropical oceanic diversity depression is not a recent phenomenon nor very deep time in origin by using a comprehensive global dataset of the calcified shells of planktonic foraminifers, abundant unicellular organisms in the world's oceans, which are exceptionally well preserved in marine sediments as fossils. The...

Activity times structure the thermal environments experienced by organisms. In mammals, species shift from being nocturnal to diurnal and vice versa, but the thermal consequences of variable activity patterns remain largely unexplored. Here we used theoretical thermoregulatory polygons bounded by estimates of basal metabolic rates (BMR), maximum me...

Climate change is predicted to impact tropical rain forests, with droughts becoming more frequent and more severe in some regions. We currently have a poor understanding of how increased drought will change the functioning of tropical rain forest. In particular, tropical rain forest invertebrates, which are numerous and biologically important, may...

Aim Thermal physiology is commonly used in mechanistic models to predict species distribution and project distribution change. Such thermal constraints for ants are often measured under laboratory conditions as critical thermal limits (CTmax and CTmin), but have also been observed in the field as foraging thermal limits (FTmin and FTmax). Here we c...

Serpent‐god worship is an ancient tradition still practiced in many sacred groves across the Western Ghats of India. Although sacred groves there hold ecological conservation value, few studies have focused on arguably the most iconic taxon in the region, snakes. We thus investigated the impact of sacred groves and snake deity worshipping on attitu...

Distribution shifts are a common response in butterflies to a warming climate. Hong Kong has documented records of several new butterfly species in recent decades, comprising a high proportion of tropical species, some of which have successfully established. In this study, we examined possible drivers for the establishment of Euripus nyctelius Doub...

Preferred temperature (Tpref) has been measured in over 100 species of aquatic and 300 species of terrestrial ectotherms as a metric for assessing behavioural thermoregulation in variable environments and, as such, has been linked to ecological processes ranging from individual behaviour to population and community dynamics. Due to the asymmetric s...

Concomitant to the decline of tropical corals caused by increasing global sea temperatures is the potential removal of barriers to species range expansions into subtropical and temperate habitats. In these habitats, species must tolerate lower annual mean temperature, wider annual temperature ranges and lower minimum temperatures. To understand eco...

As urbanization globally drives mammals and carnivores into compact spaces, they will increasingly come into conflict with development and natural resource extraction pressures. The management of these populations is further complicated by difficulties in monitoring what are often rare and elusive species. We used local ecological knowledge (LEK) t...

Monitoring programs for diverse tropical butterfly assemblages are scarce, and temporal diversity patterns in these assemblages are poorly understood. We adopted an additive partitioning approach to determine how temporal butterfly species richness was structured at the levels of days, months, and years in five tropical/subtropical sites across thr...

With increasing pressure from wildlife trade, conservation efforts must balance deficiencies in distribution data for species (the Wallacean shortfall) with the risk of increasing accessibility of locality for collectors. The Golden Kaiser-I-Hind (Teinopalpus aureus Mell) is an iconic butterfly restricted to Southeast Asia, popular in trade markets...

Strong voices suggest that horizon threats (e.g., climate change) to biodiversity are less urgent than other, more immediate threats, implying that limited resources for both research and conservation should be redirected away from horizon-driven priorities. The high impact of contrarian messages distorts the current scientific literature and comme...