Timon Merk

Timon Merk
  • PhD Student at Charité Universitätsmedizin Berlin

About

30
Publications
4,292
Reads
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274
Citations
Introduction
Building towards a real time brain computer interface based on basal ganglia LFP and ECOG recordings using machine learning methods.
Skills and Expertise
Current institution
Charité Universitätsmedizin Berlin
Current position
  • PhD Student
Additional affiliations
October 2018 - present
Bernstein Center for Computational Neuroscience Berlin
Position
  • Master's Student

Publications

Publications (30)
Preprint
Full-text available
People with Parkinsons disease suffer from levodopa-induced dyskinesia, adversely to chronic dopaminergic medication. These involuntary movements affect quality of life and are linked to lowered motor inhibition in the cortico-basal-ganglia motor network during hyperdopaminergic states. Several cortical and subcortical spectral biomarkers are assoc...
Preprint
Full-text available
Parkinson's Disease (PD) is characterized by complex motor deficits, including transient akinetic episodes during locomotion. Here, we investigated the neural correlates of akinesia in a 6-OHDA rat model of PD. We developed the open-source toolbox neurokin to analyse the kinematic and neural signal recorded during a runway task. First, we observed...
Article
Full-text available
Deep brain stimulation is a brain circuit intervention that can modulate distinct neural pathways for the alleviation of neurological symptoms in patients with brain disorders. In Parkinson’s disease, subthalamic deep brain stimulation clinically mimics the effect of dopaminergic drug treatment, but the shared pathway mechanisms on cortex – basal g...
Article
Full-text available
Objective Deep brain stimulation offers a unique opportunity to record neural activity of the basal ganglia. While much work in dystonia has focused on the globus pallidus internus, expanding research to investigate subthalamic nucleus (STN) activity in various dystonia types is critical to provide a comprehensive understanding of dystonia pathophy...
Preprint
Full-text available
Subthalamic deep brain stimulation (STN-DBS) provides unprecedented spatiotemporal precision for the treatment of Parkinson's disease (PD), allowing for direct real-time state-specific adjustments. Inspired by findings from optogenetic stimulation in mice, we hypothesized that STN-DBS effects on movement speed depend on ongoing movement kinematics...
Article
Full-text available
Brain rhythms can facilitate neural communication for the maintenance of brain function. Beta rhythms (13–35 Hz) have been proposed to serve multiple domains of human ability, including motor control, cognition, memory, and emotion, but the overarching organisational principles remain unknown. To uncover the circuit architecture of beta oscillation...
Preprint
Brain rhythms can facilitate neural communication for the maintenance of brain function. Beta rhythms (13–35 Hz) have been proposed to serve multiple domains of human ability, including motor control, cognition, memory and ewmotion, but the overarching organisational principles remain unknown. To uncover the circuit architecture of beta oscillation...
Preprint
Brain rhythms can facilitate neural communication for the maintenance of brain function. Beta rhythms (13–35 Hz) have been proposed to serve multiple domains of human ability, including motor control, cognition, memory and emotion, but the overarching organisational principles remain unknown. To uncover the circuit architecture of beta oscillations...
Preprint
Brain rhythms can facilitate neural communication for the maintenance of brain function. Beta rhythms (13–35 Hz) have been proposed to serve multiple domains of human ability, including motor control, cognition, memory and emotion, but the overarching organisational principles remain unknown. To uncover the circuit architecture of beta oscillations...
Article
Full-text available
Sleep disturbances profoundly affect the quality of life in individuals with neurological disorders. Closed-loop deep brain stimulation (DBS) holds promise for alleviating sleep symptoms, however, this technique necessitates automated sleep stage decoding from intracranial signals. We leveraged overnight data from 121 patients with movement disorde...
Preprint
Full-text available
Brain rhythms can facilitate neural communication for the maintenance of brain function. Beta rhythms (13-35 Hz) have been proposed to serve multiple domains of human ability, including motor control, cognition, memory and emotion, but the overarching organisational principles remain unknown. To uncover the circuit architecture of beta oscillations...
Preprint
Full-text available
The ability to initiate movement is fundamental to human behavior. Loss of dopaminergic neurons in Parkinson’s disease (PD) is associated with impaired movement initiation, also termed akinesia. Dopamine and subthalamic deep brain stimulation (DBS) can alleviate akinesia, but the underlying mechanisms are unknown. We recorded invasive neural activi...
Preprint
Full-text available
Brain computer interfaces (BCI) provide unprecedented spatiotemporal precision that will enable significant expansion in how numerous brain disorders are treated. Decoding dynamic patient states from brain signals with machine learning is required to leverage this precision, but a standardized framework for identifying and advancing novel clinical...
Article
Full-text available
Objective Managing the progress of drug‐resistant epilepsy patients implanted with the Responsive Neurostimulation (RNS) System requires the manual evaluation of hundreds of hours of intracranial recordings. The generation of these large amounts of data and the scarcity of experts' time for evaluation necessitate the development of automatic tools...
Article
Full-text available
Background: Sleep disturbances are highly prevalent in movement disorders, potentially due to the malfunctioning of basal ganglia structures. Pallidal deep brain stimulation (DBS) has been widely used for multiple movement disorders and been reported to improve sleep. We aimed to investigate the oscillatory pattern of pallidum during sleep and exp...
Article
The first commercially sensing enabled deep brain stimulation (DBS) devices for the treatment of movement disorders have recently become available. In the future, such devices could leverage machine learning based brain signal decoding strategies to individualize and adapt therapy in real-time. As multi-channel recordings become available, spatial...
Article
Full-text available
Brain signal decoding promises significant advances in the development of clinical brain computer interfaces (BCI). In Parkinson's disease (PD), first bidirectional BCI implants for adaptive deep brain stimulation (DBS) are now available. Brain signal decoding can extend the clinical utility of adaptive DBS but the impact of neural source, computat...
Article
Full-text available
In this paper, we present a novel Deep Neural Network-based indoor localization method that estimates the position of a Bluetooth Low Energy (BLE) transmitter (tag) by using the received signals’ characteristics at multiple Anchor Points (APs). We use the received signal strength indicator (RSSI) value and the in-phase and quadrature-phase (IQ) com...
Article
Sensing enabled implantable devices and next-generation neurotechnology allow real-time adjustments of invasive neuromodulation. The identification of symptom and disease-specific biomarkers in invasive brain signal recordings has inspired the idea of demand dependent adaptive deep brain stimulation (aDBS). Expanding the clinical utility of aDBS wi...
Preprint
Full-text available
The application of machine learning to intracranial signal analysis has the potential to revolutionize deep brain stimulation (DBS) by personalizing therapy to dynamic brain states, specific to symptoms and behaviors. Most decoding pipelines for movement decoding in the context of adaptive DBS are based on single channel frequency domain features,...
Preprint
Full-text available
Brain signal decoding promises significant advances in the development of clinical brain computer interfaces (BCI). In Parkinson’s disease (PD), first bidirectional BCI implants for adaptive deep brain stimulation (DBS) are now available. To elevate the therapeutic potential of BCI with machine learning, further research is required to characterize...
Preprint
Full-text available
Generic Angle of Arrival methods for indoor positioning are highly affected by specific antenna and environment scenarios through design impurities or multipathcomponent propagations. Here we acquired a large dataset of four different antenna designs in three different measurement environments with >140000 snapshots obtained from Bluetooth 5.1 rece...
Preprint
Full-text available
Generic Angle of Arrival methods for indoor positioning are highly affected by specific antenna and environment scenarios through design impurities or multipathcomponent propagations. Here we acquired a large dataset of four different antenna designs in three different measurement environments with >140000 snapshots obtained from Bluetooth 5.1 rece...

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