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In order to identify bacteria that assimilate dissolved inorganic carbon (DIC) in the northeast Pacific Ocean, stable isotope probing (SIP) experiments were conducted on water collected from 3 different sites off the Oregon and Washington coasts in May 2010, and one site off the Oregon Coast in September 2008 and March 2009. Samples were incubated...
Relative changes in the contribution of individual clones to the September 2008 and March 2009 the clone libraries are represented as dimensionless enrichment factors. The enrichment factor was calculated by dividing the relative abundance of a clone by the relative abundance of the total respective clones in the clone library. Values less than 1 (...
Total number of clones screened, number of contigs acquired, eukaryotic contigs removed from analysis and the final number bacterial 16s rRNA sequences analyzed are listed by location and season.
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Map of sampling locations along the Pacific Northwest Coastal Margin.
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Diagram of experimental methods from field sampling through DNA sequencing.
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Bray-Curtis Similarity Index calculated for Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes in September 2008, March 2009, and May 2010 samples at NH-10 and NH-10, CR-20, and LP-6 in May 2010.
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